Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 4.5e-200 701.0 351 100.0
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 1.6e-133 479.9 351 72.1
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 1.4e-113 413.7 352 63.9
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 6.2e-109 398.3 384 59.1
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 7.8e-96 354.8 363 56.2
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 6.6e-95 351.7 355 56.9
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 8.4e-90 334.7 361 54.3
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 7.1e-89 331.6 353 54.1
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 2.1e-88 330.1 360 52.5
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 7.4e-86 321.6 357 52.1
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 1.6e-85 320.5 358 51.7
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 4.0e-84 315.8 353 50.4
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 9.0e-84 314.7 362 51.9
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 3.4e-83 312.8 293 58.7
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 4.9e-82 308.9 359 49.6
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 3.2e-81 306.2 361 49.6
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 5.5e-81 305.4 350 50.9
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 5.5e-81 305.4 373 49.3
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 7.1e-81 305.1 362 51.4
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 1.2e-80 304.3 387 48.3
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 1.2e-80 304.3 358 51.1
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 2.7e-80 303.1 364 50.5
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 5.1e-79 298.9 359 49.9
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 6.7e-79 298.5 365 48.8
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 6.7e-79 298.5 363 50.4
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 4.3e-78 295.8 357 49.3
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 4.3e-78 295.8 263 60.5
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 5.7e-78 295.4 349 50.1
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 9.6e-78 294.7 224 67.0
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 2.1e-77 293.5 355 50.4
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 2.1e-77 293.5 358 49.2
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 2.8e-77 293.1 233 63.1
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 4.8e-77 292.4 353 49.6
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 1.4e-76 290.8 276 56.9
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 1.2e-75 287.7 237 62.9
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 2.0e-75 287.0 328 50.0
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 3.4e-75 286.2 341 49.0
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 7.6e-75 285.0 230 63.0
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 1.0e-74 284.6 282 54.3
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 1.3e-74 284.3 234 62.4
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 1.7e-74 283.9 324 50.0
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 2.2e-74 283.5 351 48.4
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 5.0e-74 282.3 366 48.4
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 6.5e-74 282.0 296 53.0
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 6.5e-74 282.0 367 46.6
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 8.4e-74 281.6 366 48.6
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 1.1e-73 281.2 226 64.2
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 1.4e-73 280.8 230 61.7
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 1.4e-73 280.8 230 63.0
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 1.4e-73 280.8 351 47.6
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 1.9e-73 280.4 323 49.8
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 1.9e-73 280.4 351 49.9
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 1.9e-73 280.4 225 62.2
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.5e-73 280.0 225 62.2
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.5e-73 280.0 225 62.2
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 2.5e-73 280.0 314 52.5
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 1.2e-72 277.7 230 61.3
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 1.2e-72 277.7 231 61.0
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 1.2e-72 277.7 231 61.0
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 2.1e-72 276.9 363 46.6
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 4.6e-72 275.8 349 47.6
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 4.6e-72 275.8 349 47.6
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 6.1e-72 275.4 230 61.3
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 6.1e-72 275.4 352 48.9
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 1.8e-71 273.9 363 46.3
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 2.3e-71 273.5 296 52.0
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 3.0e-71 273.1 393 43.5
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 1.1e-70 271.2 364 47.3
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 7.4e-70 268.5 223 64.6
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 1.3e-69 267.7 350 46.0
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 1.6e-69 267.3 246 57.3
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 4.8e-69 265.8 349 47.9
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 2.0e-67 260.4 231 57.1
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 5.9e-67 258.8 357 45.1
SalBow7G0217 Salvia bowleyana HOM05D004908 ORTHO05D006418 1.7e-66 257.3 358 45.8
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 8.5e-66 255.0 235 56.6
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 5.5e-65 252.3 262 54.2
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 3.6e-64 249.6 277 51.3
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 3.6e-64 249.6 277 51.3
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 3.6e-64 249.6 325 47.7
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 1.4e-63 247.7 301 47.8
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 6.7e-63 245.4 357 42.9
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 1.5e-62 244.2 309 47.6
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 3.3e-62 243.0 239 56.5
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 1.8e-60 237.3 236 52.5
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 5.0e-58 229.2 352 42.3
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 6.5e-58 228.8 352 42.3
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 5.5e-57 225.7 342 41.5
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 1.2e-56 224.6 358 41.6
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 3.6e-56 223.0 216 54.2
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 6.7e-55 218.8 224 52.2
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 1.5e-54 217.6 299 43.1
SalBow7G4769 Salvia bowleyana HOM05D004908 ORTHO05D006418 2.0e-54 217.2 371 40.7
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 7.4e-54 215.3 360 40.8
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 4.8e-53 212.6 356 40.7
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 1.1e-52 211.5 224 54.9
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 2.6e-51 206.8 290 41.4
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 4.7e-48 196.1 210 51.0
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.8e-47 194.1 347 40.3
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 1.5e-46 191.0 197 54.3
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 5.7e-46 189.1 223 46.6
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 6.3e-45 185.7 216 48.6
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 3.1e-44 183.3 359 37.3
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 3.1e-44 183.3 262 44.3
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 5.3e-44 182.6 253 45.1
Solyc12g038600.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 4.5e-43 179.5 146 63.7
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 1.7e-42 177.6 244 43.4
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 6.5e-42 175.6 241 43.2
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.2e-40 171.4 146 62.3
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 1.0e-39 168.3 270 40.0
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 1.0e-39 168.3 225 44.0
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 3.0e-39 166.8 237 43.0
Psat0s3566g0040 Pisum sativum HOM05D004908 ORTHO05D006418 3.0e-39 166.8 205 46.3
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 5.2e-39 166.0 252 43.7
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 2.0e-38 164.1 235 44.3
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 4.4e-38 162.9 242 40.9
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 1.3e-37 161.4 161 57.8
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 4.8e-37 159.5 227 42.7
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 4.8e-37 159.5 227 42.3
Glyma.17G080300 Glycine max HOM05D004908 ORTHO05D006418 1.6e-35 154.5 184 48.9
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 7.7e-35 152.1 193 45.1
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 2.2e-34 150.6 366 34.4
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 2.9e-34 150.2 221 40.3
Solyc12g038590.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 8.5e-34 148.7 218 43.1
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 1.9e-33 147.5 231 42.4
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 2.5e-33 147.1 186 46.2
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 7.2e-33 145.6 186 44.1
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 1.2e-32 144.8 172 45.9
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 3.6e-32 143.3 186 44.1
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 4.7e-32 142.9 159 50.9
Actinidia13428 Actinidia chinensis HOM05D004908 ORTHO05D006418 2.0e-30 137.5 102 69.6
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 2.6e-30 137.1 309 34.6
RcHm_v2.0_Chr6g0258631 Rosa chinensis HOM05D004908 ORTHO05D006418 2.8e-29 133.7 119 60.5
HPP92_019191 Vanilla planifolia HOM05D004908 ORTHO05D006418 2.0e-27 127.5 176 40.3
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 2.7e-27 127.1 243 37.9
RcHm_v2.0_Chr7g0183341 Rosa chinensis HOM05D004908 ORTHO05D006418 4.5e-27 126.3 116 55.2
Actinidia04812 Actinidia chinensis HOM05D004908 ORTHO05D006418 1.0e-26 125.2 209 39.2
vmacro17623 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 1.9e-25 120.9 91 65.9
Gohir.A06G087200 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.0e-22 110.9 82 59.8
RcHm_v2.0_Chr6g0258651 Rosa chinensis HOM05D004908 ORTHO05D006418 2.2e-21 107.5 90 63.3
CBR_g24070 Chara braunii HOM05D000019 ORTHO05D000002 5.9e-19 99.4 140 37.1
RcHm_v2.0_Chr1g0346941 Rosa chinensis HOM05D004908 ORTHO05D006418 1.3e-18 98.2 70 62.9
Dinv17434 Davidia involucrata HOM05D004908 ORTHO05D006418 4.4e-14 83.2 102 48.0
BolC6t39863H Brassica oleracea HOM05D004908 ORTHO05D039080 2.9e-13 80.5 190 35.3
BcaC08g46819 Brassica carinata HOM05D004908 ORTHO05D039080 3.7e-13 80.1 76 52.6
FvH4_5g13610 Fragaria vesca HOM05D004908 ORTHO05D006418 1.1e-12 78.6 84 56.0
Gohir.A07G149500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.6e-08 64.7 43 62.8
PRCOL_00000970 Prasinoderma coloniale HOM05D049057 ORTHO05D049180 3.1e-07 60.5 243 26.7


User provided reference genes

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