Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold51G18730 Striga asiatica HOM05D004921 ORTHO05D006008 0.0e+00 1123.6 623 100.0
MSTRG.2547 Avicennia marina HOM05D004921 ORTHO05D006008 3.3e-190 669.1 629 64.5
Migut.H02393 Erythranthe guttata HOM05D004921 ORTHO05D006008 5.3e-188 661.8 645 61.6
MSTRG.23325 Avicennia marina HOM05D004921 ORTHO05D006008 1.0e-151 541.2 402 73.9
Nitab4.5_0001095g0090 Nicotiana tabacum HOM05D004921 ORTHO05D006008 4.0e-143 512.7 633 52.0
Rhsim10G0156300 Rhododendron simsii HOM05D004921 ORTHO05D006008 1.4e-140 504.2 637 50.1
Actinidia36610 Actinidia chinensis HOM05D004921 ORTHO05D006008 1.6e-139 500.7 629 50.7
Sopen04g024290 Solanum pennellii HOM05D004921 ORTHO05D006008 1.7e-138 497.3 630 50.2
Eucgr.I00377 Eucalyptus grandis HOM05D004921 ORTHO05D006008 7.6e-134 481.9 626 51.1
Prupe.6G178900 Prunus persica HOM05D004921 ORTHO05D006008 2.1e-131 473.8 544 54.0
TAR381G0204 Trochodendron aralioides HOM05D004921 ORTHO05D006008 2.7e-131 473.4 644 48.8
Manes.12G138700 Manihot esculenta HOM05D004921 ORTHO05D006008 6.0e-131 472.2 668 47.3
TAR381G1578 Trochodendron aralioides HOM05D004921 ORTHO05D006008 6.6e-130 468.8 644 48.1
COL.COLO4_11048 Corchorus olitorius HOM05D004921 ORTHO05D006008 3.3e-129 466.5 645 48.5
Atru.chr4.263 Acer truncatum HOM05D004921 ORTHO05D006008 5.6e-129 465.7 629 47.9
Gohir.D11G225200 Gossypium hirsutum HOM05D004921 ORTHO05D006008 7.3e-129 465.3 661 47.7
Duzib147G0642 Durio zibethinus HOM05D004921 ORTHO05D006008 1.2e-128 464.5 631 48.5
Dinv21950 Davidia involucrata HOM05D004921 ORTHO05D006008 2.1e-128 463.8 343 73.2
Gorai.007G242500 Gossypium raimondii HOM05D004921 ORTHO05D006008 2.1e-128 463.8 661 47.7
Gohir.A11G198900 Gossypium hirsutum HOM05D004921 ORTHO05D006008 6.2e-128 462.2 644 47.8
PGR004G1500 Punica granatum HOM05D004921 ORTHO05D006008 1.2e-126 458.0 629 48.2
CANSAT01G2911 Cannabis sativa HOM05D004921 ORTHO05D006008 3.4e-126 456.4 634 48.1
Nn5g28998 Nelumbo nucifera HOM05D004921 ORTHO05D006008 1.3e-125 454.5 646 47.5
HanXRQChr02g0041141 Helianthus annuus HOM05D004921 ORTHO05D006008 2.9e-125 453.4 631 49.4
RcHm_v2.0_Chr2g0115541 Rosa chinensis HOM05D004921 ORTHO05D006008 2.9e-125 453.4 643 47.6
Thecc.01G107800 Theobroma cacao HOM05D004921 ORTHO05D006008 3.8e-125 453.0 637 46.9
Potri.005G080200 Populus trichocarpa HOM05D004921 ORTHO05D006008 6.4e-125 452.2 644 47.4
THA.LOC104807708 Tarenaya hassleriana HOM05D004921 ORTHO05D006008 5.4e-124 449.1 631 47.1
Hma1.2p1_0070F.1_g037680 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 1.2e-123 448.0 350 71.1
Potri.007G087100 Populus trichocarpa HOM05D004921 ORTHO05D006008 1.6e-123 447.6 637 47.1
MD01G1023900 Malus domestica HOM05D004921 ORTHO05D006008 2.7e-123 446.8 628 48.6
Gorai.008G103200 Gossypium raimondii HOM05D004921 ORTHO05D006008 3.5e-123 446.4 643 46.2
MELO3C007782.2 Cucumis melo HOM05D004921 ORTHO05D006008 1.3e-122 444.5 645 45.6
Peaxi162Scf00204g00620 Petunia axillaris HOM05D004921 ORTHO05D006008 1.3e-122 444.5 632 47.6
Gohir.D12G094600 Gossypium hirsutum HOM05D004921 ORTHO05D006008 1.1e-121 441.4 643 45.7
CARHR247030 Cardamine hirsuta HOM05D004921 ORTHO05D006008 1.5e-121 441.0 638 45.3
CiPaw.03G138100 Carya illinoinensis HOM05D004921 ORTHO05D006008 1.9e-121 440.7 490 54.3
Duzib187G0704 Durio zibethinus HOM05D004921 ORTHO05D006008 3.3e-121 439.9 689 44.4
TWI53G0980 Tripterygium wilfordii HOM05D004921 ORTHO05D006008 3.3e-121 439.9 670 45.1
QL06p050536 Quercus lobata HOM05D004921 ORTHO05D006008 4.3e-121 439.5 639 47.1
Carub.0007s0157 Capsella rubella HOM05D004921 ORTHO05D006008 1.3e-120 438.0 604 47.4
Sp7g36200 Schrenkiella parvula HOM05D004921 ORTHO05D006008 1.6e-120 437.6 607 47.0
Sed0006076 Sechium edule HOM05D004921 ORTHO05D006008 1.6e-120 437.6 663 45.1
BcaB03g12266 Brassica carinata HOM05D004921 ORTHO05D006008 6.2e-120 435.6 599 47.2
CsaV3_6G045720 Cucumis sativus L. HOM05D004921 ORTHO05D006008 1.4e-119 434.5 645 44.8
PSO541G2636 Papaver somniferum HOM05D004921 ORTHO05D006008 1.4e-119 434.5 574 50.2
PSO133G0077 Papaver somniferum HOM05D004921 ORTHO05D006008 1.8e-119 434.1 573 48.5
GSVIVG01022188001 Vitis vinifera HOM05D004921 ORTHO05D006008 3.1e-119 433.3 659 46.9
AUR62003756 Chenopodium quinoa HOM05D004921 ORTHO05D006008 1.5e-118 431.0 646 45.8
C03p78130 Brassica napus HOM05D004921 ORTHO05D006008 1.7e-117 427.6 656 44.7
Thhalv10024641m.g Eutrema salsugineum HOM05D004921 ORTHO05D006008 2.2e-117 427.2 647 45.3
ECA246G4277 Erigeron canadensis HOM05D004921 ORTHO05D006008 4.9e-117 426.0 646 47.4
AT4G39690 Arabidopsis thaliana HOM05D004921 ORTHO05D006008 6.4e-117 425.6 652 45.9
BolC3t20076H Brassica oleracea HOM05D004921 ORTHO05D006008 6.4e-117 425.6 605 46.1
Ciclev10025222m.g Citrus clementina HOM05D004921 ORTHO05D006008 6.4e-117 425.6 632 45.9
BcaC01g00311 Brassica carinata HOM05D004921 ORTHO05D006008 1.4e-116 424.5 600 45.8
Lj4A880G51 Lonicera japonica HOM05D004921 ORTHO05D006008 3.2e-116 423.3 627 46.9
EL10Ac6g15063 Beta vulgaris HOM05D004921 ORTHO05D006008 4.2e-116 422.9 637 44.9
Aqoxy6G00539 Aquilegia oxysepala HOM05D004921 ORTHO05D006008 5.4e-116 422.5 616 47.9
BraA08t34298Z Brassica rapa HOM05D004921 ORTHO05D006008 1.6e-115 421.0 587 47.5
TPR.G2186 Trifolium pratense HOM05D004921 ORTHO05D006008 1.6e-115 421.0 646 44.4
Lalb_Chr13g0296081 Lupinus albus HOM05D004921 ORTHO05D006008 6.0e-115 419.1 648 44.3
Sc03g0002320 Simmondsia chinensis HOM05D004921 ORTHO05D006008 6.0e-115 419.1 635 45.2
AUR62002041 Chenopodium quinoa HOM05D004921 ORTHO05D006008 1.3e-114 417.9 646 44.9
Sabra05G0065800 Salix brachista HOM05D004921 ORTHO05D006008 1.8e-114 417.5 744 41.5
A08p23440 Brassica napus HOM05D004921 ORTHO05D006008 6.7e-114 415.6 622 45.5
Lsat_1_v5_gn_5_40701 Lactuca sativa HOM05D004921 ORTHO05D006008 2.5e-113 413.7 609 47.5
arahy.Tifrunner.gnm1.ann1.WRB6NJ Arachis hypogaea HOM05D004921 ORTHO05D006008 3.3e-113 413.3 633 44.9
arahy.Tifrunner.gnm1.ann1.P05418 Arachis hypogaea HOM05D004921 ORTHO05D006008 4.3e-113 412.9 634 45.9
Lalb_Chr07g0184941 Lupinus albus HOM05D004921 ORTHO05D006008 1.3e-112 411.4 643 44.8
Hund13647 Selenicereus undatus HOM05D004921 ORTHO05D006008 4.8e-112 409.5 647 45.9
Glyma.05G181700 Glycine max HOM05D004921 ORTHO05D006008 1.1e-111 408.3 654 44.0
Lj4g0017071 Lotus japonicus HOM05D004921 ORTHO05D006008 6.4e-109 399.1 694 41.2
AL7G11890 Arabidopsis lyrata HOM05D004921 ORTHO05D006008 1.1e-108 398.3 618 44.8
Ah.03g142660 Amaranthus hybridus HOM05D004921 ORTHO05D006008 1.2e-107 394.8 615 44.2
Phvul.002G262700 Phaseolus vulgaris HOM05D004921 ORTHO05D006008 1.2e-107 394.8 649 42.7
vmacro12934 Vaccinium macrocarpon HOM05D004921 ORTHO05D006008 3.0e-106 390.2 625 43.4
MD15G1329400 Malus domestica HOM05D004921 ORTHO05D006008 1.9e-105 387.5 408 57.1
ClCG01G019030 Citrullus lanatus HOM05D004921 ORTHO05D006008 3.3e-105 386.7 640 43.8
ATR0661G561 Amborella trichopoda HOM05D004921 ORTHO05D006008 6.2e-104 382.5 598 44.1
Psat7g053360 Pisum sativum HOM05D004921 ORTHO05D006008 1.1e-103 381.7 655 42.7
VMungo0251G2130 Vigna mungo HOM05D004921 ORTHO05D006008 1.8e-103 380.9 644 42.1
Gohir.A12G091122 Gossypium hirsutum HOM05D004921 ORTHO05D006008 2.4e-103 380.6 652 41.6
Cc07_g15680 Coffea canephora HOM05D004921 ORTHO05D006008 4.5e-102 376.3 506 48.4
Glyma.08G139400 Glycine max HOM05D004921 ORTHO05D006008 1.3e-101 374.8 650 41.7
Aa31LG6G15580 Aethionema arabicum HOM05D004921 ORTHO05D006008 3.8e-101 373.2 646 42.6
Haze_24997 Corylus avellana HOM05D004921 ORTHO05D006008 4.9e-101 372.9 673 41.9
FAN26G3332 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.9e-100 370.9 481 50.3
FAN26G3387 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.9e-100 370.9 481 50.3
Medtr8g091480 Medicago truncatula HOM05D004921 ORTHO05D006008 1.2e-99 368.2 642 42.2
FAN28G0310 Fragaria x ananassa HOM05D004921 ORTHO05D006008 3.5e-99 366.7 481 50.1
unitig_0.g2479 Utricularia gibba HOM05D004921 ORTHO05D006008 4.6e-99 366.3 648 42.3
FvH4_1g21670 Fragaria vesca HOM05D004921 ORTHO05D006008 6.7e-98 362.5 547 46.1
FAN19G2080 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.9e-97 360.9 643 43.2
HPP92_027138 Vanilla planifolia HOM05D004921 ORTHO05D006008 4.3e-97 359.8 332 62.0
HPP92_016473 Vanilla planifolia HOM05D004921 ORTHO05D006008 7.4e-97 359.0 386 55.4
FAN23G2445 Fragaria x ananassa HOM05D004921 ORTHO05D006008 4.8e-96 356.3 568 44.7
CDE04G0927 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 5.3e-95 352.8 574 43.4
Zm00001eb431730 Zea mays HOM05D004921 ORTHO05D006008 4.2e-92 343.2 627 41.9
CDE06G0766 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 6.1e-91 339.3 504 45.4
DCAR_001020 Daucus carota HOM05D004921 ORTHO05D006008 3.9e-90 336.7 624 42.3
MBI05_g00773_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 1.5e-89 334.7 641 41.2
SEGI_07937 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 9.1e-87 325.5 395 50.1
Nitab4.5_0000518g0040 Nicotiana tabacum HOM05D004921 ORTHO05D006008 5.0e-61 240.0 435 42.1
SEGI_00052 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 9.1e-55 219.2 282 48.9
Sabra07G0072000 Salix brachista HOM05D004921 ORTHO05D006008 5.9e-54 216.5 378 39.4
MBI05_g36740_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 2.9e-53 214.2 223 55.6
A01p00580 Brassica napus HOM05D004921 ORTHO05D006008 8.3e-48 196.1 276 45.7
AagrBONN_evm.TU.Sc2ySwM_344.1023 Anthoceros agrestis HOM05D004921 ORTHO05D006008 2.0e-46 191.4 523 30.2
Pp3c3_27510 Physcomitrium patens HOM05D004921 ORTHO05D006008 1.2e-43 182.2 476 32.6
Dinv16320 Davidia involucrata HOM05D004921 ORTHO05D006008 3.6e-43 180.6 130 68.5
SMO174G0199 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 1.4e-42 178.7 621 28.7
Hma1.2p1_0070F.1_g037670 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 3.0e-42 177.6 428 39.3
BcaNung05547 Brassica carinata HOM05D004921 ORTHO05D006008 2.0e-41 174.9 230 48.7
Nitab4.5_0000518g0050 Nicotiana tabacum HOM05D004921 ORTHO05D006008 1.7e-40 171.8 116 73.3
Mapoly0001s0396 Marchantia polymorpha HOM05D004921 ORTHO05D006008 2.2e-40 171.4 596 28.9
CBR_g51480 Chara braunii HOM05D004921 ORTHO05D006008 2.9e-40 171.0 581 27.5
Cc07_g15670 Coffea canephora HOM05D004921 ORTHO05D006008 3.7e-40 170.6 116 72.4
CAN.G727.1 Capsicum annuum HOM05D004921 ORTHO05D006008 3.5e-38 164.1 116 70.7
BraA01t00066Z Brassica rapa HOM05D004921 ORTHO05D006008 7.3e-36 156.4 198 48.0
BolC1t00074H Brassica oleracea HOM05D004921 ORTHO05D006008 3.4e-33 147.5 116 69.0
Zm00001eb069160 Zea mays HOM05D004921 ORTHO05D006008 3.7e-32 144.1 434 34.8
Cpa.g.sc82.58 Carica papaya HOM05D004921 ORTHO05D006008 4.9e-32 143.7 113 67.3
C01p00710 Brassica napus HOM05D004921 ORTHO05D006008 8.3e-32 142.9 117 68.4
Dinv04895 Davidia involucrata HOM05D004921 ORTHO05D006008 9.5e-28 129.4 141 56.7
Cpa.g.sc82.56 Carica papaya HOM05D004921 ORTHO05D006008 2.8e-27 127.9 85 72.9
Dinv32118 Davidia involucrata HOM05D004921 ORTHO05D006008 2.0e-25 121.7 141 54.6
Dinv40591 Davidia involucrata HOM05D004921 ORTHO05D006008 2.0e-25 121.7 140 55.0
Nn5g31279 Nelumbo nucifera HOM05D004921 ORTHO05D006008 1.3e-24 119.0 93 66.7
SEGI_21175 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 1.3e-24 119.0 111 54.1
SMO197G0017 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 1.9e-23 115.2 229 35.8
BcaNung00891 Brassica carinata HOM05D004921 ORTHO05D006008 4.6e-22 110.5 95 62.1
CSS0005403 Camellia sinensis var. sinensis HOM05D004921 ORTHO05D006008 1.7e-21 108.6 331 31.4
MCO12G391 Micromonas commoda HOM05D004921 ORTHO05D006008 2.3e-21 108.2 347 27.7
Cpa.g.sc82.54 Carica papaya HOM05D004921 ORTHO05D006008 2.4e-18 98.2 87 63.2
Os04g0636600 Oryza sativa ssp. japonica HOM05D004921 ORTHO05D006008 3.9e-13 80.9 351 27.9
COL.COLO4_35617 Corchorus olitorius HOM05D004921 ORTHO05D006008 3.8e-08 64.3 48 60.4
Cre08.g358950 Chlamydomonas reinhardtii HOM05D004921 ORTHO05D006008 4.9e-08 63.9 152 30.3
Actinidia16048 Actinidia chinensis HOM05D004921 ORTHO05D006008 1.1e-07 62.8 45 64.4
MBI14_g34262_MAGBIO Magnolia biondii HOM05D000221 ORTHO05D006008 1.4e-07 62.4 45 64.4
MBI14_g14180_MAGBIO Magnolia biondii HOM05D000221 ORTHO05D006008 5.4e-07 60.5 46 58.7


User provided reference genes

Program Settings