Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold51G18672 Striga asiatica HOM05D006242 ORTHO05D007936 2.6e-161 572.0 288 100.0
MSTRG.20044 Avicennia marina HOM05D006242 ORTHO05D007936 1.2e-123 446.8 296 77.4
Migut.K01175 Erythranthe guttata HOM05D006242 ORTHO05D007936 1.0e-117 427.2 289 75.1
Oeu058943.1 Olea europaea HOM05D006242 ORTHO05D007936 2.5e-116 422.5 310 70.6
SalBow7G3063 Salvia bowleyana HOM05D006242 ORTHO05D007936 3.6e-115 418.7 292 74.3
PGSC0003DMG400014939 Solanum tuberosum HOM05D006242 ORTHO05D007936 6.8e-114 414.5 294 69.4
Atru.chr10.429 Acer truncatum HOM05D006242 ORTHO05D007936 1.2e-113 413.7 293 68.9
Solyc02g031980.3 Solanum lycopersicum HOM05D006242 ORTHO05D007936 3.8e-112 408.7 294 68.0
CAN.G79.44 Capsicum annuum HOM05D006242 ORTHO05D007936 8.4e-112 407.5 294 67.0
DCAR_007782 Daucus carota HOM05D006242 ORTHO05D007936 1.1e-111 407.1 294 67.3
QL11p013482 Quercus lobata HOM05D006242 ORTHO05D007936 2.4e-111 406.0 292 67.8
Actinidia22421 Actinidia chinensis HOM05D006242 ORTHO05D007936 3.2e-111 405.6 293 66.6
Rhsim06G0063600 Rhododendron simsii HOM05D006242 ORTHO05D007936 5.4e-111 404.8 295 66.1
Cfa000677 Carpinus fangiana HOM05D006242 ORTHO05D007936 7.1e-111 404.4 293 66.9
Nitab4.5_0008021g0020 Nicotiana tabacum HOM05D006242 ORTHO05D007936 1.6e-110 403.3 311 65.6
Haze_06141 Corylus avellana HOM05D006242 ORTHO05D007936 3.5e-110 402.1 293 67.6
Duzib248G1438 Durio zibethinus HOM05D006242 ORTHO05D007936 3.5e-110 402.1 294 66.7
Thecc.02G006000 Theobroma cacao HOM05D006242 ORTHO05D007936 3.5e-110 402.1 296 66.2
Dinv10532 Davidia involucrata HOM05D006242 ORTHO05D007936 7.8e-110 401.0 294 65.6
Manes.03G074100 Manihot esculenta HOM05D006242 ORTHO05D007936 1.0e-109 400.6 296 65.5
Gohir.D12G047300 Gossypium hirsutum HOM05D006242 ORTHO05D007936 1.3e-109 400.2 294 67.3
Hma1.2p1_1499F.1_g287250 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.3e-109 400.2 291 66.7
Gorai.008G050000 Gossypium raimondii HOM05D006242 ORTHO05D007936 3.9e-109 398.7 294 67.0
PSO541G0450 Papaver somniferum HOM05D006242 ORTHO05D007936 3.9e-109 398.7 291 66.7
MD10G1229500 Malus domestica HOM05D006242 ORTHO05D007936 6.6e-109 397.9 293 66.6
Cc00_g22870 Coffea canephora HOM05D006242 ORTHO05D007936 8.7e-109 397.5 296 68.2
Gohir.A12G048500 Gossypium hirsutum HOM05D006242 ORTHO05D007936 8.7e-109 397.5 294 67.0
Prupe.4G115300 Prunus persica HOM05D006242 ORTHO05D007936 8.7e-109 397.5 293 65.9
Potri.001G159600 Populus trichocarpa HOM05D006242 ORTHO05D007936 1.1e-108 397.1 293 66.2
Sabra01G0132400 Salix brachista HOM05D006242 ORTHO05D007936 1.9e-108 396.4 293 66.9
PSO675G0930 Papaver somniferum HOM05D006242 ORTHO05D007936 4.3e-108 395.2 291 66.0
GSVIVG01012122001 Vitis vinifera HOM05D006242 ORTHO05D007936 8.1e-107 391.0 292 67.1
ECA232G2813 Erigeron canadensis HOM05D006242 ORTHO05D007936 1.1e-106 390.6 291 66.0
RcHm_v2.0_Chr5g0020621 Rosa chinensis HOM05D006242 ORTHO05D007936 1.8e-106 389.8 293 65.9
MBI02_g26996_MAGBIO Magnolia biondii HOM05D006242 ORTHO05D007936 1.5e-105 386.7 289 65.1
TWI38G1455 Tripterygium wilfordii HOM05D006242 ORTHO05D007936 1.5e-105 386.7 298 63.4
Cpa.g.sc30.139 Carica papaya HOM05D006242 ORTHO05D007936 2.0e-105 386.3 295 63.7
HanXRQChr12g0381511 Helianthus annuus HOM05D006242 ORTHO05D007936 3.4e-105 385.6 294 65.3
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 5.8e-105 384.8 294 64.3
Thhalv10017018m.g Eutrema salsugineum HOM05D006242 ORTHO05D007936 5.8e-105 384.8 294 65.3
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 9.9e-105 384.0 294 63.9
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 9.9e-105 384.0 294 63.9
FvH4_3g12650 Fragaria vesca HOM05D006242 ORTHO05D007936 9.9e-105 384.0 293 65.2
FAN21G1956 Fragaria x ananassa HOM05D006242 ORTHO05D007936 1.3e-104 383.6 293 65.2
Eucgr.B01565 Eucalyptus grandis HOM05D006242 ORTHO05D007936 1.7e-104 383.3 294 65.0
FAN25G2599 Fragaria x ananassa HOM05D006242 ORTHO05D007936 2.2e-104 382.9 293 64.8
Carub.0004s1673 Capsella rubella HOM05D006242 ORTHO05D007936 2.9e-104 382.5 294 64.3
CANSAT35G0032 Cannabis sativa HOM05D006242 ORTHO05D007936 1.6e-102 376.7 296 62.8
Cc09_g05740 Coffea canephora HOM05D006242 ORTHO05D007936 3.5e-102 375.6 300 66.0
AL4G31060 Arabidopsis lyrata HOM05D006242 ORTHO05D007936 3.0e-101 372.5 310 61.0
Lj6g0025800 Lotus japonicus HOM05D006242 ORTHO05D007936 8.7e-101 370.9 294 62.2
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 6.2e-99 364.8 291 63.6
Cc09_g05610 Coffea canephora HOM05D006242 ORTHO05D007936 6.2e-99 364.8 277 67.5
Medtr1g050428 Medicago truncatula HOM05D006242 ORTHO05D007936 1.4e-98 363.6 294 60.9
PGR004G2427 Punica granatum HOM05D006242 ORTHO05D007936 2.4e-98 362.8 292 62.3
FAN16G0457 Fragaria x ananassa HOM05D006242 ORTHO05D007936 4.5e-97 358.6 320 58.8
Ca_19722_v3 Cicer arietinum L. HOM05D006242 ORTHO05D007936 5.8e-97 358.2 294 59.9
Lalb_Chr19g0129141 Lupinus albus HOM05D006242 ORTHO05D007936 7.6e-97 357.8 295 61.0
EL10Ac7g16757 Beta vulgaris HOM05D006242 ORTHO05D007936 2.2e-96 356.3 292 60.6
Lj1A1147G28 Lonicera japonica HOM05D006242 ORTHO05D007936 3.8e-96 355.5 269 65.8
Peaxi162Scf00198g01026 Petunia axillaris HOM05D006242 ORTHO05D007936 4.9e-96 355.1 291 61.9
Sed0024740 Sechium edule HOM05D006242 ORTHO05D007936 6.4e-96 354.8 297 60.6
ClCG01G025640 Citrullus lanatus HOM05D006242 ORTHO05D007936 5.5e-95 351.7 298 60.4
THA.LOC104798560 Tarenaya hassleriana HOM05D006242 ORTHO05D007936 2.1e-94 349.7 362 51.4
CsaV3_6G052870 Cucumis sativus L. HOM05D006242 ORTHO05D007936 7.9e-94 347.8 298 59.1
Ciclev10016161m.g Citrus clementina HOM05D006242 ORTHO05D007936 1.0e-93 347.4 291 61.5
CDE05G0364 Ceratophyllum demersum HOM05D006242 ORTHO05D007936 2.1e-91 339.7 294 57.5
Glyma.02G163900 Glycine max HOM05D006242 ORTHO05D007936 9.0e-90 334.3 295 56.6
Sc17g0004220 Simmondsia chinensis HOM05D006242 ORTHO05D007936 9.0e-90 334.3 258 64.7
MELO3C007020.2 Cucumis melo HOM05D006242 ORTHO05D007936 2.6e-89 332.8 333 53.8
Nitab4.5_0000138g0120 Nicotiana tabacum HOM05D006242 ORTHO05D007936 2.6e-89 332.8 300 59.0
Sp2g07040 Schrenkiella parvula HOM05D006242 ORTHO05D007936 5.8e-89 331.6 277 60.6
TPR.G10622 Trifolium pratense HOM05D006242 ORTHO05D007936 1.0e-88 330.9 294 56.5
Zm00001eb233240 Zea mays HOM05D006242 ORTHO05D007936 1.3e-88 330.5 290 55.9
BcaC02g11584 Brassica carinata HOM05D006242 ORTHO05D007936 6.5e-88 328.2 293 57.3
SpUn0157_0010 Schrenkiella parvula HOM05D006242 ORTHO05D007936 1.9e-87 326.6 266 61.7
CSS0025117 Camellia sinensis var. sinensis HOM05D006242 ORTHO05D007936 2.7e-86 322.8 238 64.7
Psat6g094920 Pisum sativum HOM05D006242 ORTHO05D007936 5.7e-84 315.1 259 59.8
SEGI_06259 Sequoiadendron giganteum HOM05D006242 ORTHO05D007936 1.3e-83 313.9 294 52.0
COL.COLO4_17635 Corchorus olitorius HOM05D006242 ORTHO05D007936 4.8e-83 312.0 226 65.9
Hma1.2p1_1700F.1_g298210 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.4e-82 310.5 309 54.0
Hma1.2p1_1499F.1_g287260 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 7.2e-79 298.1 199 71.4
Cc09_g05660 Coffea canephora HOM05D006242 ORTHO05D007936 1.3e-77 293.9 228 66.7
HanXRQChr12g0369481 Helianthus annuus HOM05D006242 ORTHO05D007936 3.0e-77 292.7 239 61.5
CiPaw.09G074600 Carya illinoinensis HOM05D006242 ORTHO05D007936 8.7e-77 291.2 211 66.4
Lsat_1_v5_gn_6_96480 Lactuca sativa HOM05D006242 ORTHO05D007936 8.7e-77 291.2 229 65.1
arahy.Tifrunner.gnm1.ann1.PA3R73 Arachis hypogaea HOM05D006242 ORTHO05D007936 1.9e-76 290.0 283 53.7
Sopen02g010240 Solanum pennellii HOM05D006242 ORTHO05D007936 6.3e-75 285.0 202 67.8
SMO203G0088 Selaginella moellendorffii HOM05D006242 ORTHO05D007936 9.0e-74 281.2 287 50.2
Lj6g0012918 Lotus japonicus HOM05D006242 ORTHO05D007936 6.1e-70 268.5 201 64.7
Mapoly0026s0041 Marchantia polymorpha HOM05D006242 ORTHO05D007936 2.3e-69 266.5 297 46.1
arahy.Tifrunner.gnm1.ann1.VZGM4G Arachis hypogaea HOM05D006242 ORTHO05D007936 3.9e-69 265.8 257 53.7
AT2G35035 Arabidopsis thaliana HOM05D006242 ORTHO05D007936 5.7e-68 261.9 287 51.6
Pp3c12_18460 Physcomitrium patens HOM05D006242 ORTHO05D007936 9.7e-68 261.2 303 44.6
AagrBONN_evm.TU.Sc2ySwM_228.1028 Anthoceros agrestis HOM05D006242 ORTHO05D007936 6.9e-66 255.0 290 42.4
Nn7g38280 Nelumbo nucifera HOM05D006242 ORTHO05D007936 8.5e-64 248.1 291 47.4
CARHR129200 Cardamine hirsuta HOM05D006242 ORTHO05D007936 1.1e-63 247.7 198 61.1
Phvul.007G242500 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 4.2e-63 245.7 176 66.5
TAR624G0344 Trochodendron aralioides HOM05D006242 ORTHO05D007936 3.8e-56 222.6 171 62.0
Glyma.20G074000 Glycine max HOM05D006242 ORTHO05D007936 3.2e-55 219.5 208 54.3
Cc09_g05680 Coffea canephora HOM05D006242 ORTHO05D007936 1.8e-53 213.8 188 61.7
AUR62040160 Chenopodium quinoa HOM05D006242 ORTHO05D007936 2.0e-49 200.3 174 56.9
ATR1094G001 Amborella trichopoda HOM05D006242 ORTHO05D007936 2.2e-48 196.8 200 48.5
SGA_v2.0_scaffold4G02502 Striga asiatica HOM05D006242 ORTHO05D007936 5.5e-47 192.2 96 100.0
CBR_g46754 Chara braunii HOM05D006242 ORTHO05D007936 1.2e-46 191.0 238 42.4
VMungo0720G1734 Vigna mungo HOM05D006242 ORTHO05D007936 2.1e-46 190.3 187 54.0
unitig_37.g12020 Utricularia gibba HOM05D006242 ORTHO05D007936 1.7e-43 180.6 124 68.5
HPP92_011011 Vanilla planifolia HOM05D006242 ORTHO05D007936 6.8e-37 158.7 125 62.4
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 6.3e-35 152.1 309 33.0
Hma1.2p1_1700F.1_g298200 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 7.0e-34 148.7 96 75.0
GSVIVG01006138001 Vitis vinifera HOM05D006242 ORTHO05D007936 2.7e-33 146.7 96 76.0
Cc09_g05630 Coffea canephora HOM05D006242 ORTHO05D007936 9.5e-31 138.3 148 54.1
Hund15670 Selenicereus undatus HOM05D006242 ORTHO05D007936 1.6e-30 137.5 99 67.7
Aqoxy1G01391 Aquilegia oxysepala HOM05D006242 ORTHO05D007936 6.1e-30 135.6 95 70.5
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 1.8e-29 134.0 120 54.2
AUR62037908 Chenopodium quinoa HOM05D006242 ORTHO05D007936 1.3e-24 117.9 91 64.8
Phvul.007G242466 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 2.5e-23 113.6 108 53.7
BcaB02g09486 Brassica carinata HOM05D006242 ORTHO05D007936 2.1e-22 110.5 98 53.1
TPR.G22035 Trifolium pratense HOM05D006242 ORTHO05D007936 3.6e-22 109.8 81 65.4
ATR1094G019 Amborella trichopoda HOM05D006242 ORTHO05D007936 1.0e-21 108.2 82 63.4
MCO04G402 Micromonas commoda HOM05D006242 ORTHO05D007936 1.0e-21 108.2 171 35.1
Cc09_g05640 Coffea canephora HOM05D006242 ORTHO05D007936 5.2e-21 105.9 69 75.4
Cc09_g05720 Coffea canephora HOM05D006242 ORTHO05D007936 2.6e-20 103.6 96 61.5
VMungo0720G2601 Vigna mungo HOM05D006242 ORTHO05D007936 3.4e-20 103.2 97 54.6
HPP92_011012 Vanilla planifolia HOM05D006242 ORTHO05D007936 9.8e-20 101.7 121 47.1
Cfa025972 Carpinus fangiana HOM05D006242 ORTHO05D007936 2.0e-17 94.0 224 30.8
AUR62040161 Chenopodium quinoa HOM05D006242 ORTHO05D007936 2.3e-16 90.5 90 48.9
SHI14613 Sapria himalayana HOM05D000105 ORTHO05D000023 6.2e-14 82.4 56 66.1
CiPaw.09G216300 Carya illinoinensis HOM05D006242 ORTHO05D007936 1.8e-13 80.9 72 55.6
Cc09_g05710 Coffea canephora HOM05D006242 ORTHO05D007936 1.7e-11 74.3 58 65.5
Os02g0173000 Oryza sativa ssp. japonica HOM05D006242 ORTHO05D007936 9.2e-10 68.6 53 60.4
Hund15669 Selenicereus undatus HOM05D000023 ORTHO05D000014 6.6e-08 62.4 72 44.4


User provided reference genes

Program Settings