Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 1.1e-127 459.9 231 100.0
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 8.8e-88 327.4 215 81.4
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 8.8e-88 327.4 215 80.5
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 3.7e-86 322.0 215 80.9
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 2.4e-85 319.3 216 78.2
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 4.1e-85 318.5 215 79.1
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 5.4e-85 318.2 215 79.5
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 5.4e-85 318.2 215 78.6
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 9.1e-85 317.4 215 78.1
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 9.1e-85 317.4 215 78.6
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 1.2e-84 317.0 219 78.5
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 1.6e-84 316.6 215 78.1
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 1.6e-84 316.6 215 78.6
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 2.0e-84 316.2 215 78.1
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 2.7e-84 315.8 215 78.1
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 2.7e-84 315.8 215 79.1
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 2.7e-84 315.8 215 78.6
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 2.7e-84 315.8 215 78.1
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 2.7e-84 315.8 215 78.1
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 5.9e-84 314.7 215 77.7
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 7.7e-84 314.3 215 76.7
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 7.7e-84 314.3 215 77.7
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 1.0e-83 313.9 215 77.2
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.0e-83 313.9 215 77.2
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 1.0e-83 313.9 215 78.1
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 1.0e-83 313.9 215 77.2
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.3e-83 313.5 215 76.3
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 1.3e-83 313.5 215 76.7
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 1.3e-83 313.5 215 76.7
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 1.3e-83 313.5 215 76.7
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 1.3e-83 313.5 215 76.7
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 1.3e-83 313.5 216 77.8
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 2.3e-83 312.8 215 78.1
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 2.3e-83 312.8 215 76.7
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 2.3e-83 312.8 215 77.7
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 2.9e-83 312.4 216 75.9
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 3.8e-83 312.0 215 76.7
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 3.8e-83 312.0 220 74.5
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 6.5e-83 311.2 215 76.7
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 6.5e-83 311.2 215 76.7
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 6.5e-83 311.2 215 77.7
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 8.6e-83 310.8 215 76.7
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 8.6e-83 310.8 215 76.7
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 1.1e-82 310.5 215 75.3
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 1.5e-82 310.1 225 75.1
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 1.9e-82 309.7 215 77.2
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 1.9e-82 309.7 215 76.3
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 2.5e-82 309.3 215 77.7
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 3.3e-82 308.9 215 74.9
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 3.3e-82 308.9 215 75.3
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 4.2e-82 308.5 215 75.3
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 7.2e-82 307.8 215 76.3
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 9.5e-82 307.4 215 77.2
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 1.2e-81 307.0 215 75.8
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 1.2e-81 307.0 215 75.8
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 1.6e-81 306.6 215 74.9
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 1.6e-81 306.6 215 75.8
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 2.1e-81 306.2 215 75.8
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 2.1e-81 306.2 215 75.8
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.1e-81 306.2 215 75.8
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 2.8e-81 305.8 215 74.0
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 2.8e-81 305.8 215 74.4
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 2.8e-81 305.8 215 75.8
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 2.8e-81 305.8 215 75.3
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 3.6e-81 305.4 215 75.8
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 4.7e-81 305.1 215 77.2
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 4.7e-81 305.1 215 75.8
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 4.7e-81 305.1 218 77.1
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 6.1e-81 304.7 216 75.0
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 6.1e-81 304.7 217 74.7
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 6.1e-81 304.7 215 75.8
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 8.0e-81 304.3 215 75.3
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 1.0e-80 303.9 215 74.0
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 1.4e-80 303.5 215 74.9
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 1.8e-80 303.1 216 74.1
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 1.8e-80 303.1 215 75.3
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 1.8e-80 303.1 215 77.2
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 2.3e-80 302.8 215 75.3
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 4.0e-80 302.0 234 70.5
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 4.0e-80 302.0 234 70.5
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 4.0e-80 302.0 215 75.3
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 2.6e-79 299.3 220 71.8
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.6e-79 299.3 229 71.6
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 1.3e-78 297.0 219 74.0
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.3e-78 297.0 216 74.1
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 2.2e-78 296.2 215 74.0
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 2.8e-78 295.8 218 72.5
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 4.9e-78 295.0 216 74.1
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 6.3e-78 294.7 216 73.6
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 6.3e-78 294.7 216 73.6
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 1.1e-77 293.9 217 74.2
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 1.4e-77 293.5 217 74.2
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 2.4e-77 292.7 228 71.1
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 5.4e-77 291.6 215 73.5
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 7.0e-77 291.2 215 71.6
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 9.2e-77 290.8 222 72.5
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 1.2e-76 290.4 222 72.1
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 1.2e-76 290.4 215 71.2
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 1.2e-76 290.4 268 63.4
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 1.6e-76 290.0 215 71.2
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 2.0e-76 289.7 219 71.7
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 2.7e-76 289.3 215 74.0
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 3.5e-76 288.9 216 72.2
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 1.3e-75 287.0 215 72.1
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 6.6e-75 284.6 215 69.8
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 6.6e-75 284.6 215 69.8
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 1.9e-74 283.1 225 68.0
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 3.3e-74 282.3 216 72.2
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 4.3e-74 282.0 215 71.2
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 1.2e-73 280.4 215 67.9
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 1.4e-72 276.9 220 71.4
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 3.0e-72 275.8 206 72.8
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 1.2e-71 273.9 217 68.7
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 2.0e-71 273.1 185 78.4
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 3.4e-71 272.3 218 69.3
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 7.5e-71 271.2 215 67.9
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 4.9e-70 268.5 185 78.4
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 1.4e-69 266.9 234 63.7
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.9e-69 266.5 220 63.6
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 5.0e-67 258.5 216 64.8
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.1e-66 257.3 215 66.5
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.9e-66 256.5 215 64.2
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 9.5e-66 254.2 219 63.5
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 1.6e-65 253.4 219 61.2
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 2.3e-64 249.6 215 65.1
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 6.8e-64 248.1 181 72.9
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 5.8e-63 245.0 181 71.8
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 2.9e-62 242.7 206 67.0
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 2.1e-60 236.5 211 58.8
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 3.5e-60 235.7 211 60.2
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 2.5e-58 229.6 214 57.9
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 4.3e-58 228.8 223 55.2
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 3.6e-57 225.7 218 54.1
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 1.4e-56 223.8 217 54.4
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 3.1e-56 222.6 125 89.6
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 2.2e-54 216.5 186 60.8
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 2.1e-52 209.9 182 59.9
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 2.7e-52 209.5 177 66.1
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 4.6e-52 208.8 218 52.8
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 8.9e-48 194.5 167 64.7
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 3.2e-45 186.0 143 71.3
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 5.4e-45 185.3 143 69.9
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 2.1e-41 173.3 230 52.6
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 2.2e-38 163.3 224 42.4
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.3e-35 154.1 119 68.1
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 3.6e-33 146.0 138 63.0
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 3.9e-27 125.9 73 83.6
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 2.5e-26 123.2 120 62.5
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 8.1e-25 118.2 64 87.5
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 9.9e-23 111.3 65 83.1
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 2.2e-22 110.2 65 81.5
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 2.5e-21 106.7 95 63.2
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 9.0e-16 88.2 63 73.0
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 8.7e-11 71.6 78 53.8
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 2.9e-06 56.6 34 79.4
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 6.5e-06 55.5 33 81.8
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 8.5e-06 55.1 33 78.8


User provided reference genes

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