Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 5.0e-197 691.0 378 100.0
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 6.1e-86 322.0 461 48.8
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 3.6e-62 243.0 513 38.2
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 2.5e-55 220.3 463 34.6
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 2.7e-49 200.3 456 34.6
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 2.3e-48 197.2 491 32.2
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 3.8e-48 196.4 467 33.6
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 7.3e-47 192.2 496 32.3
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 9.5e-47 191.8 370 42.2
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 9.5e-47 191.8 487 33.1
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 6.1e-46 189.1 457 31.7
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 1.2e-44 184.9 451 32.6
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 5.7e-44 182.6 460 32.4
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 1.8e-42 177.6 455 33.4
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 2.4e-42 177.2 458 34.7
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 1.6e-41 174.5 293 39.6
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 1.6e-41 174.5 469 32.6
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 4.6e-41 172.9 328 38.7
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 9.5e-39 165.2 285 37.5
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 7.5e-36 155.6 473 30.7
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 9.8e-36 155.2 479 32.6
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.0e-32 145.2 442 30.1
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 1.3e-32 144.8 407 30.7
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 1.7e-32 144.4 472 30.7
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 2.3e-32 144.1 233 36.5
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 2.3e-32 144.1 472 30.7
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 5.0e-32 142.9 470 30.2
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.1e-31 141.7 439 28.7
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 1.9e-31 141.0 475 31.8
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 3.3e-31 140.2 509 28.3
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 4.3e-31 139.8 325 35.1
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 5.6e-31 139.4 461 32.8
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.2e-30 138.3 361 34.1
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 2.8e-30 137.1 466 30.5
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 2.3e-29 134.0 487 29.0
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 3.1e-29 133.7 486 32.5
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 4.0e-29 133.3 467 27.2
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 6.8e-29 132.5 220 36.8
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 8.9e-29 132.1 457 31.3
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 2.6e-28 130.6 486 31.7
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 7.5e-28 129.0 277 32.5
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 7.5e-28 129.0 488 30.9
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 1.3e-27 128.3 512 30.3
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 1.3e-27 128.3 438 28.8
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 2.2e-27 127.5 265 32.8
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 6.4e-27 125.9 247 40.5
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 6.4e-27 125.9 469 29.6
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 8.3e-27 125.6 504 29.2
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 8.3e-27 125.6 276 32.6
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 8.3e-27 125.6 498 26.7
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 1.4e-26 124.8 232 40.1
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 1.9e-26 124.4 228 34.6
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 3.2e-26 123.6 272 31.6
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 4.1e-26 123.2 229 34.5
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 5.4e-26 122.9 411 33.6
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 5.4e-26 122.9 276 31.9
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 5.4e-26 122.9 459 27.7
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 7.1e-26 122.5 266 32.3
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 9.2e-26 122.1 262 34.0
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 1.2e-25 121.7 416 30.8
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 2.7e-25 120.6 224 35.7
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 2.7e-25 120.6 398 30.9
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 3.9e-24 116.7 450 29.6
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 6.6e-24 115.9 167 41.3
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 1.5e-23 114.8 414 30.7
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 1.9e-23 114.4 390 30.5
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 3.3e-23 113.6 264 31.4
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 5.6e-23 112.8 495 26.9
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 5.6e-23 112.8 226 34.5
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 5.6e-23 112.8 226 34.5
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 5.6e-23 112.8 277 31.8
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 5.6e-23 112.8 138 47.1
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 7.3e-23 112.5 459 25.9
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 9.5e-23 112.1 400 31.8
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 1.6e-22 111.3 441 28.1
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 2.8e-22 110.5 428 26.9
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 8.1e-22 109.0 398 31.4
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 1.1e-21 108.6 494 26.7
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 1.1e-21 108.6 226 33.6
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 2.4e-21 107.5 125 44.0
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 4.0e-21 106.7 477 27.3
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 5.2e-21 106.3 232 33.2
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 1.2e-20 105.1 249 33.3
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 2.0e-20 104.4 515 27.0
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 2.6e-20 104.0 509 27.7
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 3.4e-20 103.6 229 31.9
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 4.4e-20 103.2 162 43.2
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 4.4e-20 103.2 224 30.8
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 5.8e-20 102.8 508 27.6
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 7.6e-20 102.4 515 26.8
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 9.9e-20 102.1 465 29.5
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 1.3e-19 101.7 162 42.6
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 1.3e-19 101.7 439 28.0
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 1.7e-19 101.3 251 29.5
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 2.2e-19 100.9 387 31.3
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 2.2e-19 100.9 144 40.3
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 3.8e-19 100.1 439 27.8
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 8.4e-19 99.0 413 27.8
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 8.4e-19 99.0 413 25.7
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 7.1e-18 95.9 303 30.7
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 9.2e-18 95.5 346 29.5
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 1.6e-17 94.7 496 26.0
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 4.6e-17 93.2 142 40.1
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 6.0e-17 92.8 137 41.6
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 7.8e-17 92.4 485 25.6
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 1.0e-16 92.0 121 44.6
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 1.7e-16 91.3 217 30.9
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 1.7e-16 91.3 252 29.8
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 1.5e-15 88.2 136 36.8
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 1.2e-14 85.1 141 36.2
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 2.1e-14 84.3 246 28.9
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 2.8e-14 84.0 252 28.2
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 2.8e-14 84.0 250 32.0
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 4.4e-12 76.6 209 30.6
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 5.8e-12 76.3 165 33.3
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 9.9e-12 75.5 204 27.5
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 1.3e-11 75.1 111 36.9
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 1.7e-11 74.7 441 27.7
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 6.4e-11 72.8 177 28.8
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 1.1e-10 72.0 458 23.8
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 1.5e-07 61.6 120 32.5
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 1.9e-07 61.2 42 69.0
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 1.9e-07 61.2 122 36.9
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 2.5e-07 60.8 138 29.7


User provided reference genes

Program Settings