Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold51G18644 Striga asiatica HOM05D006030 ORTHO05D007475 8.2e-149 530.4 275 100.0
Dinv21492 Davidia involucrata HOM05D006030 ORTHO05D007475 3.5e-75 285.8 289 55.7
Hma1.2p1_0689F.1_g203740 Hydrangea macrophylla HOM05D006030 ORTHO05D007475 1.6e-72 276.9 295 53.6
Nitab4.5_0008802g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 2.4e-68 263.1 295 52.2
CSS0019216 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 3.2e-68 262.7 292 54.5
Nitab4.5_0000315g0160 Nicotiana tabacum HOM05D006030 ORTHO05D007475 4.2e-68 262.3 297 52.5
Peaxi162Scf00045g00235 Petunia axillaris HOM05D000253 ORTHO05D000149 1.2e-67 260.8 297 53.2
CSS0023088 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 6.6e-66 255.0 289 53.6
SalBow7G1462 Salvia bowleyana HOM05D006030 ORTHO05D007475 1.9e-65 253.4 309 47.6
SalBow7G3121 Salvia bowleyana HOM05D006030 ORTHO05D007475 1.9e-65 253.4 309 47.6
Actinidia39595 Actinidia chinensis HOM05D006030 ORTHO05D007475 4.3e-65 252.3 292 52.4
Solyc08g023270.3 Solanum lycopersicum HOM05D006030 ORTHO05D007475 4.3e-65 252.3 292 52.4
Sopen08g008180 Solanum pennellii HOM05D006030 ORTHO05D007475 4.3e-65 252.3 292 52.4
CAN.G36.30 Capsicum annuum HOM05D006030 ORTHO05D007475 7.3e-65 251.5 287 52.3
PGSC0003DMG400005380 Solanum tuberosum HOM05D006030 ORTHO05D007475 1.3e-64 250.8 292 52.1
Rhsim02G0159700 Rhododendron simsii HOM05D006030 ORTHO05D007475 1.6e-64 250.4 293 51.9
Lj2A324T65 Lonicera japonica HOM05D006030 ORTHO05D007475 4.8e-64 248.8 298 50.3
MSTRG.14783 Avicennia marina HOM05D006030 ORTHO05D007475 1.4e-63 247.3 302 52.0
CSS0008742 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 1.8e-63 246.9 293 49.1
ECA236G5152 Erigeron canadensis HOM05D006030 ORTHO05D007475 3.4e-62 242.7 266 52.6
Peaxi162Scf00333g00215 Petunia axillaris HOM05D006030 ORTHO05D007475 8.4e-61 238.0 268 51.9
Lj1A1167T61 Lonicera japonica HOM05D006030 ORTHO05D007475 3.2e-60 236.1 273 51.3
Ciclev10015995m.g Citrus clementina HOM05D006030 ORTHO05D007475 2.1e-59 233.4 294 45.9
HanXRQChr15g0481561 Helianthus annuus HOM05D006030 ORTHO05D007475 3.5e-59 232.6 266 50.0
Prupe.4G087600 Prunus persica HOM05D006030 ORTHO05D007475 7.9e-59 231.5 271 49.1
MSTRG.13261 Avicennia marina HOM05D006030 ORTHO05D007475 1.7e-58 230.3 296 48.3
Atru.chr10.1031 Acer truncatum HOM05D006030 ORTHO05D007475 2.3e-58 229.9 299 46.2
Migut.H01344 Erythranthe guttata HOM05D006030 ORTHO05D007475 2.3e-58 229.9 314 47.1
Cc09_g08600 Coffea canephora HOM05D006030 ORTHO05D007475 6.6e-58 228.4 288 48.3
Nitab4.5_0000717g0050 Nicotiana tabacum HOM05D006030 ORTHO05D007475 1.5e-57 227.3 269 51.7
TAR627G0722 Trochodendron aralioides HOM05D006030 ORTHO05D007475 1.9e-57 226.9 291 47.8
HanXRQChr04g0112111 Helianthus annuus HOM05D006030 ORTHO05D007475 2.5e-57 226.5 264 49.6
Nitab4.5_0002900g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 3.3e-57 226.1 268 51.1
TAR624G0353 Trochodendron aralioides HOM05D006030 ORTHO05D007475 4.0e-55 219.2 292 47.6
MD10G1256000 Malus domestica HOM05D006030 ORTHO05D007475 1.2e-54 217.6 271 46.9
Haze_05717 Corylus avellana HOM05D006030 ORTHO05D007475 1.5e-54 217.2 278 47.8
CiPaw.09G117700 Carya illinoinensis HOM05D006030 ORTHO05D007475 3.4e-54 216.1 292 45.5
MBI18_g10587_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 3.4e-54 216.1 296 45.9
MD05G1060100 Malus domestica HOM05D006030 ORTHO05D007475 1.3e-53 214.2 268 47.0
Cfa000873 Carpinus fangiana HOM05D006030 ORTHO05D007475 1.7e-53 213.8 274 46.7
QL05p054330 Quercus lobata HOM05D006030 ORTHO05D007475 1.7e-53 213.8 291 46.7
SalBow8G3821 Salvia bowleyana HOM05D006030 ORTHO05D007475 2.9e-53 213.0 268 48.1
Lsat_1_v5_gn_7_32280 Lactuca sativa HOM05D006030 ORTHO05D007475 6.4e-53 211.8 255 49.4
Thecc.02G010100 Theobroma cacao HOM05D006030 ORTHO05D007475 6.4e-53 211.8 276 47.5
FAN11G1717 Fragaria x ananassa HOM05D006030 ORTHO05D007475 4.2e-52 209.1 267 47.2
DCAR_007858 Daucus carota HOM05D006030 ORTHO05D007475 9.3e-52 208.0 269 45.4
Lsat_1_v5_gn_1_116040 Lactuca sativa HOM05D006030 ORTHO05D007475 1.2e-51 207.6 275 46.2
RcHm_v2.0_Chr5g0015101 Rosa chinensis HOM05D006030 ORTHO05D007475 2.1e-51 206.8 269 47.2
FvH4_3g09520 Fragaria vesca HOM05D006030 ORTHO05D007475 2.7e-51 206.5 267 46.8
FAN16G0477 Fragaria x ananassa HOM05D006030 ORTHO05D007475 3.5e-51 206.1 267 46.4
Potri.011G091700 Populus trichocarpa HOM05D006030 ORTHO05D007475 6.0e-51 205.3 284 44.7
DCAR_027876 Daucus carota HOM05D006030 ORTHO05D007475 7.9e-51 204.9 269 47.6
FAN25G1233 Fragaria x ananassa HOM05D006030 ORTHO05D007475 7.9e-51 204.9 267 46.4
Manes.15G125900 Manihot esculenta HOM05D006030 ORTHO05D007475 1.8e-50 203.8 292 43.8
FAN21G0577 Fragaria x ananassa HOM05D006030 ORTHO05D007475 3.0e-50 203.0 267 46.1
Duzib132G1046 Durio zibethinus HOM05D006030 ORTHO05D007475 8.7e-50 201.4 273 46.2
CANSAT35G1388 Cannabis sativa HOM05D006030 ORTHO05D007475 4.3e-49 199.1 302 42.4
TWI09G0666 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 5.6e-49 198.7 264 44.7
Sabra11G0085900 Salix brachista HOM05D006030 ORTHO05D007475 1.3e-48 197.6 284 43.7
Glyma.15G092100 Glycine max HOM05D006030 ORTHO05D007475 1.6e-48 197.2 268 46.3
Ca_00520_v3 Cicer arietinum L. HOM05D006030 ORTHO05D007475 8.1e-48 194.9 268 46.3
BcaB01g01909 Brassica carinata HOM05D006030 ORTHO05D007475 1.4e-47 194.1 265 44.5
Thhalv10029201m.g Eutrema salsugineum HOM05D006030 ORTHO05D007475 1.8e-47 193.7 270 44.1
Glyma.13G220300 Glycine max HOM05D006030 ORTHO05D007475 2.4e-47 193.4 269 46.8
Phvul.006G167100 Phaseolus vulgaris HOM05D006030 ORTHO05D007475 3.1e-47 193.0 271 43.9
Sp6g03610 Schrenkiella parvula HOM05D006030 ORTHO05D007475 3.1e-47 193.0 269 43.9
MELO3C002779.2 Cucumis melo HOM05D006030 ORTHO05D007475 6.9e-47 191.8 268 41.0
Carub.0006s3344 Capsella rubella HOM05D006030 ORTHO05D007475 9.0e-47 191.4 270 43.0
PSO541G2924 Papaver somniferum HOM05D006030 ORTHO05D007475 1.2e-46 191.0 270 44.4
PGSC0003DMG400031336 Solanum tuberosum HOM05D006030 ORTHO05D007475 1.2e-46 191.0 263 46.0
A09p02880 Brassica napus HOM05D006030 ORTHO05D007475 2.0e-46 190.3 268 43.7
Duzib052G0461 Durio zibethinus HOM05D006030 ORTHO05D007475 3.4e-46 189.5 256 47.7
Lalb_Chr15g0086701 Lupinus albus HOM05D006030 ORTHO05D007475 3.4e-46 189.5 266 44.0
Medtr2g018890 Medicago truncatula HOM05D006030 ORTHO05D007475 3.4e-46 189.5 262 45.8
Solyc02g021450.2 Solanum lycopersicum HOM05D006030 ORTHO05D007475 3.4e-46 189.5 263 45.2
TPR.G26249 Trifolium pratense HOM05D006030 ORTHO05D007475 4.5e-46 189.1 267 43.1
Aa31LG9G8890 Aethionema arabicum HOM05D006030 ORTHO05D007475 5.8e-46 188.7 273 43.6
Sopen02g005930 Solanum pennellii HOM05D006030 ORTHO05D007475 7.6e-46 188.3 263 45.2
ClCG03G006430 Citrullus lanatus HOM05D006030 ORTHO05D007475 1.0e-45 188.0 290 40.7
CsaV3_1G036960 Cucumis sativus L. HOM05D006030 ORTHO05D007475 1.0e-45 188.0 268 41.0
PSO675G1541 Papaver somniferum HOM05D006030 ORTHO05D007475 1.3e-45 187.6 268 44.0
Lalb_Chr20g0117731 Lupinus albus HOM05D006030 ORTHO05D007475 4.9e-45 185.7 267 44.2
Eucgr.E02463 Eucalyptus grandis HOM05D006030 ORTHO05D007475 6.5e-45 185.3 249 45.4
Lj6g0008094 Lotus japonicus HOM05D006030 ORTHO05D007475 6.5e-45 185.3 271 44.6
AL6G49160 Arabidopsis lyrata HOM05D006030 ORTHO05D007475 1.4e-44 184.1 272 43.8
COL.COLO4_17663 Corchorus olitorius HOM05D006030 ORTHO05D007475 1.4e-44 184.1 275 42.5
Psat1g191320 Pisum sativum HOM05D006030 ORTHO05D007475 1.9e-44 183.7 262 43.9
TWI53G0643 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 1.9e-44 183.7 264 42.8
DCAR_003876 Daucus carota HOM05D006030 ORTHO05D007475 2.5e-44 183.3 224 49.1
Manes.17G075000 Manihot esculenta HOM05D006030 ORTHO05D007475 2.5e-44 183.3 275 42.2
AT4G03620 Arabidopsis thaliana HOM05D006030 ORTHO05D007475 3.2e-44 183.0 268 43.3
CARHR252040 Cardamine hirsuta HOM05D006030 ORTHO05D007475 4.2e-44 182.6 269 41.6
Sed0007526 Sechium edule HOM05D006030 ORTHO05D007475 4.2e-44 182.6 266 38.7
BraA09t35933Z Brassica rapa HOM05D006030 ORTHO05D007475 7.1e-44 181.8 267 42.3
THA.LOC104806979 Tarenaya hassleriana HOM05D006030 ORTHO05D007475 1.6e-43 180.6 264 41.7
C09p02960 Brassica napus HOM05D006030 ORTHO05D007475 3.5e-43 179.5 266 42.5
BcaC04g23958 Brassica carinata HOM05D006030 ORTHO05D007475 6.0e-43 178.7 257 44.0
BolC9t53223H Brassica oleracea HOM05D006030 ORTHO05D007475 6.0e-43 178.7 257 44.0
Sc05g0005830 Simmondsia chinensis HOM05D006030 ORTHO05D007475 6.0e-43 178.7 269 42.0
arahy.Tifrunner.gnm1.ann1.IB7BS1 Arachis hypogaea HOM05D006030 ORTHO05D007475 3.0e-42 176.4 249 43.0
arahy.Tifrunner.gnm1.ann1.Z0KP5S Arachis hypogaea HOM05D006030 ORTHO05D007475 3.0e-42 176.4 249 43.0
Sed0012497 Sechium edule HOM05D006030 ORTHO05D007475 3.9e-42 176.0 273 38.1
VMungo0540G2189 Vigna mungo HOM05D006030 ORTHO05D007475 1.5e-41 174.1 269 40.5
Aqoxy1G01654 Aquilegia oxysepala HOM05D006030 ORTHO05D007475 2.5e-41 173.3 265 41.5
MBI02_g11375_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 5.7e-41 172.2 259 41.3
Nn4g26650 Nelumbo nucifera HOM05D006030 ORTHO05D007475 7.4e-41 171.8 264 40.2
Lalb_Chr18g0055221 Lupinus albus HOM05D006030 ORTHO05D007475 1.8e-39 167.2 270 41.9
PSO541G2932 Papaver somniferum HOM05D006030 ORTHO05D007475 2.0e-38 163.7 283 41.0
Hund21555 Selenicereus undatus HOM05D006030 ORTHO05D007475 1.1e-36 157.9 276 37.7
GSVIVG01021577001 Vitis vinifera HOM05D006030 ORTHO05D007475 3.2e-36 156.4 160 55.0
AUR62002659 Chenopodium quinoa HOM05D006030 ORTHO05D007475 4.2e-36 156.0 274 36.5
AUR62030127 Chenopodium quinoa HOM05D006030 ORTHO05D007475 9.3e-36 154.8 275 36.7
PSO675G3639 Papaver somniferum HOM05D006030 ORTHO05D007475 3.5e-35 152.9 287 39.7
EL10Ac8g19610 Beta vulgaris HOM05D006030 ORTHO05D007475 7.9e-35 151.8 276 35.9
PGR031G1516 Punica granatum HOM05D006030 ORTHO05D007475 7.9e-35 151.8 273 38.1
arahy.Tifrunner.gnm1.ann1.DKT922 Arachis hypogaea HOM05D006030 ORTHO05D007475 4.3e-33 146.0 269 37.2
arahy.Tifrunner.gnm1.ann1.TN2AI9 Arachis hypogaea HOM05D006030 ORTHO05D007475 4.3e-33 146.0 269 37.2
Nn3g20281 Nelumbo nucifera HOM05D006030 ORTHO05D007475 2.2e-32 143.7 248 38.7
Ah.09g232450 Amaranthus hybridus HOM05D006030 ORTHO05D007475 1.2e-30 137.9 262 34.7
ATR0626G038 Amborella trichopoda HOM05D006030 ORTHO05D007475 1.6e-27 127.5 152 48.7
Migut.M01870 Erythranthe guttata HOM05D006030 ORTHO05D007475 3.3e-25 119.8 110 60.9
Cpa.g.sc17.66 Carica papaya HOM05D006030 ORTHO05D007475 9.7e-25 118.2 156 44.9
unitig_37.g12083 Utricularia gibba HOM05D006030 ORTHO05D007475 2.9e-21 106.7 174 43.1
HPP92_019506 Vanilla planifolia HOM05D006030 ORTHO05D007475 1.6e-19 100.9 250 32.0
SGA_v2.0_scaffold106G30660 Striga asiatica HOM05D006030 ORTHO05D007475 5.7e-17 92.4 98 58.2
Peaxi162Scf00333g00214 Petunia axillaris HOM05D006030 ORTHO05D007475 7.0e-15 85.5 56 71.4
SEGI_26103 Sequoiadendron giganteum HOM05D006030 ORTHO05D007475 3.8e-13 79.7 136 36.0
Nn1g09396 Nelumbo nucifera HOM05D006030 ORTHO05D007475 1.6e-06 57.8 163 28.8


User provided reference genes

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