Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold519G52683 Striga asiatica HOM05D004628 ORTHO05D005166 0.0e+00 1447.2 837 100.0
SGA_v2.0_scaffold32G12978 Striga asiatica HOM05D004628 ORTHO05D005166 6.3e-184 648.7 899 52.6
MSTRG.16666 Avicennia marina HOM05D004628 ORTHO05D005166 4.0e-122 443.4 931 41.7
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 2.1e-91 341.3 938 35.5
Oeu037295.1 Olea europaea HOM05D004628 ORTHO05D005166 1.4e-90 338.6 913 35.0
SalBow6G1764 Salvia bowleyana HOM05D004628 ORTHO05D005166 1.9e-84 318.2 858 37.1
SalBow6G5308 Salvia bowleyana HOM05D004628 ORTHO05D005166 1.9e-84 318.2 858 37.1
Cc02_g20190 Coffea canephora HOM05D004628 ORTHO05D005166 2.4e-74 284.6 886 33.7
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 2.9e-72 277.7 947 32.4
Hma1.2p1_1051F.1_g252220 Hydrangea macrophylla HOM05D004628 ORTHO05D005166 2.7e-70 271.2 880 32.5
Rhsim05G0093300 Rhododendron simsii HOM05D004628 ORTHO05D005166 2.5e-68 264.6 927 33.5
Lj5A222T77 Lonicera japonica HOM05D004628 ORTHO05D005166 1.3e-67 262.3 902 32.7
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 2.4e-66 258.1 876 39.3
vmacro22260 Vaccinium macrocarpon HOM05D004628 ORTHO05D005166 1.2e-65 255.8 869 37.3
Solyc01g106750.2 Solanum lycopersicum HOM05D004628 ORTHO05D005166 1.7e-64 251.9 893 33.5
CSS0024832 Camellia sinensis var. sinensis HOM05D004628 ORTHO05D005166 2.2e-64 251.5 953 31.9
QL11p028919 Quercus lobata HOM05D004628 ORTHO05D005166 3.8e-64 250.8 911 34.0
QL93p0138_0014 Quercus lobata HOM05D004628 ORTHO05D005166 2.5e-63 248.1 911 33.9
Sopen01g049070 Solanum pennellii HOM05D004628 ORTHO05D005166 4.2e-63 247.3 860 32.8
PGSC0003DMG400001291 Solanum tuberosum HOM05D004628 ORTHO05D005166 4.2e-63 247.3 879 34.5
Nitab4.5_0010657g0040 Nicotiana tabacum HOM05D004628 ORTHO05D005166 9.7e-60 236.1 912 35.2
Atru.chr5.2254 Acer truncatum HOM05D004628 ORTHO05D005166 1.4e-58 232.3 940 31.7
unitig_60.g25465 Utricularia gibba HOM05D004628 ORTHO05D005166 2.9e-56 224.6 893 30.6
Thecc.02G121000 Theobroma cacao HOM05D004628 ORTHO05D005166 8.5e-56 223.0 965 30.1
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 3.3e-52 211.1 859 30.8
Cfa004712 Carpinus fangiana HOM05D004628 ORTHO05D005166 2.2e-51 208.4 966 30.5
Gorai.005G229300 Gossypium raimondii HOM05D004628 ORTHO05D005166 3.7e-51 207.6 943 30.9
TAR381G0961 Trochodendron aralioides HOM05D004628 ORTHO05D005166 8.2e-51 206.5 933 30.0
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 1.2e-49 202.6 933 30.9
Gohir.D02G203066 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.6e-49 202.2 924 30.2
Gohir.A03G180400 Gossypium hirsutum HOM05D004628 ORTHO05D005166 2.0e-49 201.8 947 29.4
Peaxi162Scf00016g03244 Petunia axillaris HOM05D004628 ORTHO05D005166 2.0e-49 201.8 926 31.6
Duzib132G0942 Durio zibethinus HOM05D004628 ORTHO05D005166 3.2e-47 194.5 946 27.1
TWI14G1143 Tripterygium wilfordii HOM05D004628 ORTHO05D005166 1.2e-46 192.6 892 28.6
DCAR_021936 Daucus carota HOM05D004628 ORTHO05D005166 8.8e-45 186.4 1014 31.1
Glyma.17G013400 Glycine max HOM05D004628 ORTHO05D005166 2.6e-44 184.9 906 27.8
TAR628G0237 Trochodendron aralioides HOM05D004628 ORTHO05D005166 2.6e-44 184.9 934 27.6
Nn6g32057 Nelumbo nucifera HOM05D004628 ORTHO05D005166 7.5e-44 183.3 922 28.2
Sabra09G0065100 Salix brachista HOM05D004628 ORTHO05D005166 7.5e-44 183.3 909 30.1
CiPaw.06G163200 Carya illinoinensis HOM05D004628 ORTHO05D005166 6.3e-43 180.3 1024 28.2
Eucgr.B01419 Eucalyptus grandis HOM05D004628 ORTHO05D005166 2.4e-42 178.3 883 31.1
Glyma.07G260600 Glycine max HOM05D004628 ORTHO05D005166 7.0e-42 176.8 912 27.6
unitig_744.g24202 Utricularia gibba HOM05D004628 ORTHO05D005166 2.0e-41 175.3 865 28.6
Lalb_Chr18g0056371 Lupinus albus HOM05D004628 ORTHO05D005166 1.0e-40 172.9 949 28.1
Manes.10G088200 Manihot esculenta HOM05D004628 ORTHO05D005166 1.7e-40 172.2 920 29.7
Ciclev10027822m.g Citrus clementina HOM05D004628 ORTHO05D005166 3.8e-40 171.0 938 27.8
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 8.5e-40 169.9 905 29.2
Prupe.8G151700 Prunus persica HOM05D004628 ORTHO05D005166 7.2e-39 166.8 938 27.7
Ah.01g024550 Amaranthus hybridus HOM05D004628 ORTHO05D005166 9.4e-39 166.4 873 28.6
Sc08g0004290 Simmondsia chinensis HOM05D004628 ORTHO05D005166 1.2e-38 166.0 335 37.3
FvH4_2g03070 Fragaria vesca HOM05D004628 ORTHO05D005166 1.6e-38 165.6 935 28.1
FAN24G0611 Fragaria x ananassa HOM05D004628 ORTHO05D005166 4.7e-38 164.1 924 27.7
ECA234G3304 Erigeron canadensis HOM05D004628 ORTHO05D005166 8.0e-38 163.3 809 31.6
FAN27G1701 Fragaria x ananassa HOM05D004628 ORTHO05D005166 8.0e-38 163.3 918 29.2
Cpa.g.sc106.25 Carica papaya HOM05D004628 ORTHO05D005166 1.8e-37 162.2 864 30.6
HanXRQChr04g0101671 Helianthus annuus HOM05D004628 ORTHO05D005166 3.0e-37 161.4 838 28.5
RcHm_v2.0_Chr6g0247921 Rosa chinensis HOM05D004628 ORTHO05D005166 6.8e-37 160.2 876 27.7
FAN15G3289 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.5e-36 159.1 889 28.5
FAN20G2820 Fragaria x ananassa HOM05D004628 ORTHO05D005166 2.0e-36 158.7 927 28.2
AUR62027031 Chenopodium quinoa HOM05D004628 ORTHO05D005166 4.4e-36 157.5 889 28.2
Lsat_1_v5_gn_5_111860 Lactuca sativa HOM05D004628 ORTHO05D005166 9.8e-36 156.4 828 31.8
Manes.07G052400 Manihot esculenta HOM05D004628 ORTHO05D005166 4.8e-35 154.1 924 29.1
Ah.01g007160 Amaranthus hybridus HOM05D004628 ORTHO05D005166 6.3e-35 153.7 317 39.4
COL.COLO4_32472 Corchorus olitorius HOM05D004628 ORTHO05D005166 1.1e-34 152.9 922 27.0
Phvul.003G078900 Phaseolus vulgaris HOM05D004628 ORTHO05D005166 1.1e-34 152.9 953 26.2
AUR62030875 Chenopodium quinoa HOM05D004628 ORTHO05D005166 2.4e-34 151.8 870 29.1
Gohir.A13G048100 Gossypium hirsutum HOM05D004628 ORTHO05D005166 3.5e-33 147.9 848 29.0
Hund00415 Selenicereus undatus HOM05D004628 ORTHO05D005166 7.7e-33 146.7 943 27.6
Gorai.013G052200 Gossypium raimondii HOM05D004628 ORTHO05D005166 1.0e-32 146.4 305 38.7
Gohir.D13G046500 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.7e-32 145.6 305 37.4
A07p04590 Brassica napus HOM05D004628 ORTHO05D005166 2.9e-32 144.8 871 27.9
BraA07t28247Z Brassica rapa HOM05D004628 ORTHO05D005166 1.1e-31 142.9 873 28.3
Aqoxy6G01519 Aquilegia oxysepala HOM05D004628 ORTHO05D005166 4.2e-31 141.0 945 26.1
AL3G52350 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 9.5e-31 139.8 869 27.2
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 1.2e-30 139.4 357 38.7
TPR.G37037 Trifolium pratense HOM05D004628 ORTHO05D005166 1.6e-30 139.0 891 26.8
ClCG10G009980 Citrullus lanatus HOM05D004628 ORTHO05D005166 2.1e-30 138.7 1001 28.6
CsaV3_4G000030 Cucumis sativus L. HOM05D004628 ORTHO05D005166 4.7e-30 137.5 989 26.7
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 1.4e-29 136.0 274 39.8
VMungo1215G2063 Vigna mungo HOM05D004628 ORTHO05D005166 1.8e-29 135.6 879 29.2
Medtr4g132160 Medicago truncatula HOM05D004628 ORTHO05D005166 1.2e-28 132.9 968 26.7
CARHR106490 Cardamine hirsuta HOM05D004628 ORTHO05D005166 1.5e-28 132.5 875 26.6
Lj4g0013789 Lotus japonicus HOM05D004628 ORTHO05D005166 2.0e-28 132.1 935 29.4
CAN.G289.65 Capsicum annuum HOM05D004628 ORTHO05D005166 4.4e-28 131.0 247 43.7
Sabra16G0180900 Salix brachista HOM05D004628 ORTHO05D005166 5.7e-28 130.6 975 29.2
GSVIVG01037037001 Vitis vinifera HOM05D004628 ORTHO05D005166 1.7e-27 129.0 168 50.0
arahy.Tifrunner.gnm1.ann1.L5X8FN Arachis hypogaea HOM05D004628 ORTHO05D005166 3.7e-27 127.9 983 26.3
PSO210G3573 Papaver somniferum HOM05D004628 ORTHO05D005166 4.9e-27 127.5 939 26.8
Carub.0003s2996 Capsella rubella HOM05D004628 ORTHO05D005166 1.1e-26 126.3 893 26.5
PSO447G0365 Papaver somniferum HOM05D004628 ORTHO05D005166 1.4e-26 125.9 953 25.6
PGR142G3374 Punica granatum HOM05D004628 ORTHO05D005166 7.0e-26 123.6 907 27.6
AT2G16270 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 1.2e-25 122.9 897 28.7
C07p07410 Brassica napus HOM05D004628 ORTHO05D005166 1.2e-25 122.9 878 26.9
Sed0020853 Sechium edule HOM05D004628 ORTHO05D005166 1.6e-25 122.5 966 27.0
BolC7t41157H Brassica oleracea HOM05D004628 ORTHO05D005166 2.7e-25 121.7 866 27.3
Lsat_1_v5_gn_5_129280 Lactuca sativa HOM05D004628 ORTHO05D005166 2.7e-25 121.7 237 40.5
AT1G16630 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 3.5e-25 121.3 954 26.2
Haze_10333 Corylus avellana HOM05D004628 ORTHO05D005166 3.5e-25 121.3 965 29.7
arahy.Tifrunner.gnm1.ann1.R9786Y Arachis hypogaea HOM05D004628 ORTHO05D005166 1.0e-24 119.8 1001 24.3
arahy.Tifrunner.gnm1.ann1.V3P7C9 Arachis hypogaea HOM05D000513 ORTHO05D005786 5.0e-24 117.5 897 25.9
arahy.Tifrunner.gnm1.ann1.EFUN8Y Arachis hypogaea HOM05D004628 ORTHO05D005166 1.5e-23 115.9 916 26.7
Thhalv10006806m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 2.5e-23 115.2 908 26.2
BcaC06g36138 Brassica carinata HOM05D004628 ORTHO05D005166 9.5e-23 113.2 861 26.9
Potri.001G289100 Populus trichocarpa HOM05D004628 ORTHO05D005166 2.1e-22 112.1 819 28.1
Sp3g29460 Schrenkiella parvula HOM05D004628 ORTHO05D005166 2.8e-22 111.7 946 27.8
Lalb_Chr15g0087631 Lupinus albus HOM05D004628 ORTHO05D005166 6.8e-21 107.1 973 24.7
CAN.G289.56 Capsicum annuum HOM05D004628 ORTHO05D005166 4.4e-20 104.4 303 36.0
C05p14910 Brassica napus HOM05D004628 ORTHO05D005166 9.8e-20 103.2 915 26.1
CAN.G289.57 Capsicum annuum HOM05D004628 ORTHO05D005166 1.3e-19 102.8 161 43.5
Thhalv10022556m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 4.9e-19 100.9 914 24.2
CARHR017100 Cardamine hirsuta HOM05D004628 ORTHO05D005166 6.4e-19 100.5 926 26.2
Carub.0001s1637 Capsella rubella HOM05D004628 ORTHO05D005166 1.4e-18 99.4 908 26.2
CAN.G411.101 Capsicum annuum HOM05D002370 ORTHO05D005166 3.2e-18 98.2 143 49.0
Aa31LG8G13660 Aethionema arabicum HOM05D004628 ORTHO05D005166 5.4e-18 97.4 859 26.3
AL1G28790 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 5.4e-18 97.4 908 25.3
BolC5t30206H Brassica oleracea HOM05D004628 ORTHO05D005166 2.0e-17 95.5 912 26.3
MELO3C018028.2 Cucumis melo HOM05D004628 ORTHO05D005166 4.6e-17 94.4 991 26.1
Psat6g212600 Pisum sativum HOM05D004628 ORTHO05D005166 4.6e-17 94.4 246 33.7
A06p12620 Brassica napus HOM05D004628 ORTHO05D005166 1.7e-16 92.4 937 24.8
BraA06t24423Z Brassica rapa HOM05D004628 ORTHO05D005166 1.7e-16 92.4 919 26.6
CAN.G535.2 Capsicum annuum HOM05D004628 ORTHO05D005166 3.9e-16 91.3 112 52.7
arahy.Tifrunner.gnm1.ann1.53VTV0 Arachis hypogaea HOM05D004628 ORTHO05D005166 5.0e-16 90.9 266 35.0
EL10Ac4g09112 Beta vulgaris HOM05D004628 ORTHO05D005166 1.5e-15 89.4 1008 24.7
Ca_21082_v3 Cicer arietinum L. HOM05D004628 ORTHO05D005166 4.3e-15 87.8 978 24.6
CAN.G289.55 Capsicum annuum HOM05D004628 ORTHO05D005166 5.6e-15 87.4 328 34.1
Sp1g14770 Schrenkiella parvula HOM05D004628 ORTHO05D005166 2.8e-14 85.1 950 24.0
Psat4g006640 Pisum sativum HOM05D004628 ORTHO05D005166 3.6e-14 84.7 1022 24.4
HPP92_001855 Vanilla planifolia HOM05D004628 ORTHO05D005166 8.0e-14 83.6 307 32.9
GSVIVG01037038001 Vitis vinifera HOM05D004628 ORTHO05D005166 8.9e-13 80.1 80 62.5
Duzib132G1149 Durio zibethinus HOM05D004628 ORTHO05D005166 1.5e-12 79.3 354 29.1
Atru.chr1.1899 Acer truncatum HOM05D004628 ORTHO05D005166 2.0e-12 79.0 177 42.4
Nitab4.5_0008331g0010 Nicotiana tabacum HOM05D004628 ORTHO05D005166 3.4e-12 78.2 161 39.1
THA.LOC104819526 Tarenaya hassleriana HOM05D004628 ORTHO05D005166 2.2e-11 75.5 942 24.1
CAN.G1627.6 Capsicum annuum HOM05D004628 ORTHO05D005166 1.1e-10 73.2 94 51.1
ATR0767G029 Amborella trichopoda HOM05D004628 ORTHO05D005166 1.4e-10 72.8 220 33.2
FvH4_6g23772 Fragaria vesca HOM05D004628 ORTHO05D005166 4.1e-10 71.2 43 74.4
FAN09G3722 Fragaria x ananassa HOM05D004628 ORTHO05D005166 5.4e-10 70.9 43 74.4
BcaC05g25526 Brassica carinata HOM05D004628 ORTHO05D005166 1.2e-09 69.7 917 25.1
PSO210G1301 Papaver somniferum HOM05D029104 ORTHO05D010143 1.6e-09 69.3 214 31.8
PSO210G2837 Papaver somniferum HOM05D029104 ORTHO05D010143 1.6e-09 69.3 173 34.7
Nitab4.5_0006022g0030 Nicotiana tabacum HOM05D008208 ORTHO05D010143 2.1e-09 68.9 275 27.6
MBI04_g07011_MAGBIO Magnolia biondii HOM05D008208 ORTHO05D010143 7.8e-09 67.0 241 29.5
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 3.9e-08 64.7 86 46.5
BcaNung07335 Brassica carinata HOM05D004628 ORTHO05D005166 6.6e-08 63.9 58 60.3
MBI01_g10116_MAGBIO Magnolia biondii HOM05D008208 ORTHO05D010143 6.6e-08 63.9 190 29.5
Nitab4.5_0004969g0030 Nicotiana tabacum HOM05D008208 ORTHO05D010143 6.6e-08 63.9 276 28.3
TWI18G0382 Tripterygium wilfordii HOM05D008208 ORTHO05D010143 8.6e-08 63.5 253 30.0
CAN.G1627.4 Capsicum annuum HOM05D004628 ORTHO05D005166 1.1e-07 63.2 42 69.0
PGSC0003DMG400002607 Solanum tuberosum HOM05D008208 ORTHO05D010143 1.9e-07 62.4 234 29.1
GSVIVG01016967001 Vitis vinifera HOM05D000585 ORTHO05D001841 1.9e-07 62.4 281 32.0
Nitab4.5_0000575g0060 Nicotiana tabacum HOM05D004628 ORTHO05D005166 3.3e-07 61.6 146 34.2
Peaxi162Scf00038g01129 Petunia axillaris HOM05D008208 ORTHO05D010143 3.3e-07 61.6 224 26.8
arahy.Tifrunner.gnm1.ann1.GD5ZZG Arachis hypogaea HOM05D004628 ORTHO05D005166 4.3e-07 61.2 111 41.4
Duzib192G1063 Durio zibethinus HOM05D008208 ORTHO05D010143 5.6e-07 60.8 225 31.1
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 5.6e-07 60.8 39 66.7
MD09G1201700 Malus domestica HOM05D008208 ORTHO05D010143 9.5e-07 60.1 242 32.2
Gorai.011G070600 Gossypium raimondii HOM05D008208 ORTHO05D010143 2.1e-06 58.9 187 33.2
QL05p019674 Quercus lobata HOM05D008208 ORTHO05D010143 2.1e-06 58.9 191 30.9
Nn5g30859 Nelumbo nucifera HOM05D004628 ORTHO05D005166 3.6e-06 58.2 123 38.2
Gohir.A10G065000 Gossypium hirsutum HOM05D008208 ORTHO05D010143 4.7e-06 57.8 187 32.6
Solyc03g121080.3 Solanum lycopersicum HOM05D008208 ORTHO05D010143 4.7e-06 57.8 211 29.9
Gohir.D10G066500 Gossypium hirsutum HOM05D008208 ORTHO05D010143 6.2e-06 57.4 187 32.6
TAR626G1368 Trochodendron aralioides HOM05D008208 ORTHO05D010143 8.1e-06 57.0 186 30.6


User provided reference genes

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