Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold512G52633 Striga asiatica HOM05D008202 ORTHO05D010302 5.4e-50 200.7 100 100.0
MSTRG.19550 Avicennia marina HOM05D008202 ORTHO05D010302 3.9e-24 114.8 102 61.8
Migut.K00545 Erythranthe guttata HOM05D008202 ORTHO05D010302 2.8e-22 108.6 103 62.1
Rhsim05G0039400 Rhododendron simsii HOM05D008202 ORTHO05D010302 5.3e-21 104.4 97 54.6
Hma1.2p1_0386F.1_g141760 Hydrangea macrophylla HOM05D008202 ORTHO05D010302 7.6e-20 100.5 98 57.1
Oeu018577.1 Olea europaea HOM05D008202 ORTHO05D010302 1.7e-19 99.4 99 57.6
Dinv42250 Davidia involucrata HOM05D008202 ORTHO05D010302 6.4e-19 97.4 99 55.6
Dinv36682 Davidia involucrata HOM05D008202 ORTHO05D010302 4.2e-18 94.7 87 56.3
vmacro10849 Vaccinium macrocarpon HOM05D008202 ORTHO05D010302 5.4e-18 94.4 63 71.4
TWI63G1052 Tripterygium wilfordii HOM05D008202 ORTHO05D010302 3.5e-17 91.7 94 51.1
CSS0001567 Camellia sinensis var. sinensis HOM05D008202 ORTHO05D010302 7.9e-17 90.5 100 53.0
Ciclev10010342m.g Citrus clementina HOM05D008202 ORTHO05D010302 7.9e-17 90.5 67 64.2
Peaxi162Scf00720g00418 Petunia axillaris HOM05D008202 ORTHO05D010302 7.9e-17 90.5 56 76.8
Actinidia39781 Actinidia chinensis HOM05D008202 ORTHO05D010302 1.0e-16 90.1 92 51.1
Cc06_g10540 Coffea canephora HOM05D008202 ORTHO05D010302 1.0e-16 90.1 105 48.6
HanXRQChr12g0358111 Helianthus annuus HOM05D008202 ORTHO05D010302 1.1e-15 86.7 103 49.5
Actinidia17520 Actinidia chinensis HOM05D008202 ORTHO05D010302 3.3e-15 85.1 96 50.0
Manes.03G026600 Manihot esculenta HOM05D008202 ORTHO05D010302 7.4e-15 84.0 96 49.0
Ciclev10027258m.g Citrus clementina HOM05D008202 ORTHO05D010302 1.6e-14 82.8 67 59.7
Prupe.7G218700 Prunus persica HOM05D008202 ORTHO05D010302 1.6e-14 82.8 94 51.1
EL10Ac8g18376 Beta vulgaris HOM05D008202 ORTHO05D010302 3.7e-14 81.6 86 52.3
Thecc.09G099700 Theobroma cacao HOM05D008202 ORTHO05D010302 3.7e-14 81.6 98 46.9
Lsat_1_v5_gn_8_98261 Lactuca sativa HOM05D008202 ORTHO05D010302 4.8e-14 81.3 100 47.0
Ah.14g082540 Amaranthus hybridus HOM05D008202 ORTHO05D010302 6.2e-14 80.9 66 62.1
Ah.14g083220 Amaranthus hybridus HOM05D008202 ORTHO05D010302 8.1e-14 80.5 103 46.6
Manes.04G125801 Manihot esculenta HOM05D008202 ORTHO05D010302 1.4e-13 79.7 55 65.5
Manes.13G078801 Manihot esculenta HOM05D008202 ORTHO05D010302 1.4e-13 79.7 55 65.5
COL.COLO4_34733 Corchorus olitorius HOM05D008202 ORTHO05D010302 2.4e-13 79.0 53 66.0
DCAR_028656 Daucus carota HOM05D008202 ORTHO05D010302 3.1e-13 78.6 94 48.9
PGSC0003DMG400046448 Solanum tuberosum HOM05D001685 ORTHO05D006653 4.0e-13 78.2 61 63.9
AUR62010887 Chenopodium quinoa HOM05D008202 ORTHO05D010302 5.3e-13 77.8 99 45.5
AUR62021399 Chenopodium quinoa HOM05D008202 ORTHO05D010302 6.9e-13 77.4 93 46.2
Solyc04g058130.3 Solanum lycopersicum HOM05D008202 ORTHO05D010302 6.9e-13 77.4 61 62.3
MD02G1066600 Malus domestica HOM05D008202 ORTHO05D010302 1.2e-12 76.6 93 50.5
Sc18g0001520 Simmondsia chinensis HOM05D008202 ORTHO05D010302 3.4e-12 75.1 99 46.5
FAN23G0175 Fragaria x ananassa HOM05D008202 ORTHO05D010302 4.5e-12 74.7 97 44.3
FAN26G0167 Fragaria x ananassa HOM05D008202 ORTHO05D010302 4.5e-12 74.7 53 67.9
FAN26G3206 Fragaria x ananassa HOM05D008202 ORTHO05D010302 4.5e-12 74.7 53 67.9
CiPaw.04G157000 Carya illinoinensis HOM05D008202 ORTHO05D010302 5.8e-12 74.3 44 72.7
FvH4_1g06280 Fragaria vesca HOM05D008202 ORTHO05D010302 7.6e-12 73.9 97 45.4
FAN19G1093 Fragaria x ananassa HOM05D008202 ORTHO05D010302 7.6e-12 73.9 97 45.4
CiPaw.04G155900 Carya illinoinensis HOM05D008202 ORTHO05D010302 1.0e-11 73.6 44 72.7
Gohir.A06G067500 Gossypium hirsutum HOM05D008202 ORTHO05D010302 1.3e-11 73.2 95 46.3
RcHm_v2.0_Chr2g0091981 Rosa chinensis HOM05D008202 ORTHO05D010302 1.7e-11 72.8 42 76.2
GSVIVG01015295001 Vitis vinifera HOM05D008202 ORTHO05D010302 2.9e-11 72.0 46 67.4
Gorai.010G077500 Gossypium raimondii HOM05D008202 ORTHO05D010302 6.5e-11 70.9 95 44.2
Haze_25829 Corylus avellana HOM05D008202 ORTHO05D010302 8.4e-11 70.5 97 45.4
Nn8g39054 Nelumbo nucifera HOM05D008202 ORTHO05D010302 1.1e-10 70.1 92 40.2
Atru.chr7.1471 Acer truncatum HOM05D008202 ORTHO05D010302 1.9e-10 69.3 45 64.4
Nitab4.5_0002557g0010 Nicotiana tabacum HOM05D001685 ORTHO05D006653 1.2e-09 66.6 48 62.5
CDE08G1102 Ceratophyllum demersum HOM05D008202 ORTHO05D010302 1.6e-09 66.2 93 41.9
Lalb_Chr14g0371911 Lupinus albus HOM05D008202 ORTHO05D010302 2.1e-09 65.9 61 50.8
unitig_52.g17095 Utricularia gibba HOM05D008202 ORTHO05D010302 2.7e-09 65.5 81 42.0
ClCG11G002070 Citrullus lanatus HOM05D008202 ORTHO05D010302 3.5e-09 65.1 47 59.6
Medtr6g088800 Medicago truncatula HOM05D008202 ORTHO05D010302 4.6e-09 64.7 97 38.1
Ciclev10027039m.g Citrus clementina HOM05D008202 ORTHO05D010302 6.0e-09 64.3 104 41.3
MBI01_g10122_MAGBIO Magnolia biondii HOM05D003005 ORTHO05D004170 1.0e-08 63.5 50 60.0
CsaV3_2G001850 Cucumis sativus L. HOM05D008202 ORTHO05D010302 1.3e-08 63.2 47 53.2
ATR0705G156 Amborella trichopoda HOM05D008202 ORTHO05D010302 2.3e-08 62.4 85 40.0
Gohir.D06G066100 Gossypium hirsutum HOM05D008202 ORTHO05D010302 3.0e-08 62.0 95 42.1
Os01g0742766 Oryza sativa ssp. japonica HOM05D008202 ORTHO05D010302 5.1e-08 61.2 39 64.1
Psat1g048280 Pisum sativum HOM05D008202 ORTHO05D010302 1.1e-07 60.1 97 35.1
unitig_52.g17250 Utricularia gibba HOM05D008202 ORTHO05D010302 1.9e-07 59.3 81 38.3
MD15G1197100 Malus domestica HOM05D008202 ORTHO05D010302 2.5e-07 58.9 86 45.3
CAN.G1325.3 Capsicum annuum HOM05D001685 ORTHO05D006653 4.3e-07 58.2 99 40.4
Eucgr.C03726 Eucalyptus grandis HOM05D008202 ORTHO05D010302 4.3e-07 58.2 81 37.0
Mapoly0004s0023 Marchantia polymorpha HOM05D039400 ORTHO05D034304 9.6e-07 57.0 66 45.5
PGR102G0794 Punica granatum HOM05D008202 ORTHO05D010302 9.6e-07 57.0 80 41.2
Zm00001eb371180 Zea mays HOM05D008202 ORTHO05D010302 9.6e-07 57.0 39 56.4
HPP92_009087 Vanilla planifolia HOM05D008202 ORTHO05D010302 2.8e-06 55.5 93 32.3
PSO210G1322 Papaver somniferum HOM05D061259 ORTHO05D010302 3.7e-06 55.1 35 65.7
PSO210G2383 Papaver somniferum HOM05D061259 ORTHO05D010302 3.7e-06 55.1 35 65.7


User provided reference genes

Program Settings