Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold50G18602 Striga asiatica HOM05D005223 ORTHO05D006449 0.0e+00 1905.6 972 100.0
SGA_v2.0_scaffold457G51932 Striga asiatica HOM05D005223 ORTHO05D006449 0.0e+00 1727.6 1023 89.6
Migut.I00475 Erythranthe guttata HOM05D005223 ORTHO05D006449 0.0e+00 1243.4 1022 67.5
MSTRG.11293 Avicennia marina HOM05D005223 ORTHO05D006449 0.0e+00 1238.0 1029 65.4
SalBow5G2547 Salvia bowleyana HOM05D005223 ORTHO05D006449 0.0e+00 1187.9 1055 62.3
Dinv38469 Davidia involucrata HOM05D005223 ORTHO05D006449 1.0e-302 1043.5 995 57.9
CSS0037650 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 3.3e-301 1038.5 1019 55.8
GSVIVG01007540001 Vitis vinifera HOM05D005223 ORTHO05D006449 2.4e-296 1022.3 1051 53.8
Cc04_g10370 Coffea canephora HOM05D005223 ORTHO05D006449 9.2e-296 1020.4 1010 55.1
MD14G1163600 Malus domestica HOM05D005223 ORTHO05D006449 6.0e-295 1017.7 1024 55.2
Rhsim08G0185000 Rhododendron simsii HOM05D005223 ORTHO05D006449 8.6e-294 1013.8 1022 55.3
QL10p005060 Quercus lobata HOM05D005223 ORTHO05D006449 1.1e-293 1013.4 1027 53.7
Nitab4.5_0000955g0070 Nicotiana tabacum HOM05D005223 ORTHO05D006449 1.5e-293 1013.1 1019 56.2
Cfa018892 Carpinus fangiana HOM05D005223 ORTHO05D006449 1.9e-293 1012.7 1021 54.2
Solyc10g006780.4 Solanum lycopersicum HOM05D005223 ORTHO05D006449 8.1e-292 1007.3 1012 54.8
Peaxi162Scf00536g00422 Petunia axillaris HOM05D005223 ORTHO05D006449 1.4e-291 1006.5 983 56.7
vmacro19239 Vaccinium macrocarpon HOM05D005223 ORTHO05D006449 1.4e-291 1006.5 984 56.4
PGSC0003DMG400025026 Solanum tuberosum HOM05D005223 ORTHO05D006449 1.8e-291 1006.1 1015 54.9
Atru.chr9.1012 Acer truncatum HOM05D005223 ORTHO05D006449 4.0e-291 1005.0 1013 54.2
Haze_07276 Corylus avellana HOM05D005223 ORTHO05D006449 6.4e-289 997.7 1026 54.1
Prupe.5G157000 Prunus persica HOM05D005223 ORTHO05D006449 1.4e-288 996.5 1020 54.4
RcHm_v2.0_Chr7g0191161 Rosa chinensis HOM05D005223 ORTHO05D006449 1.6e-287 993.0 1026 53.4
Gohir.D07G057900 Gossypium hirsutum HOM05D005223 ORTHO05D006449 6.6e-286 987.6 1027 54.3
Sopen10g002700 Solanum pennellii HOM05D005223 ORTHO05D006449 6.6e-286 987.6 1013 54.2
Nitab4.5_0002775g0020 Nicotiana tabacum HOM05D005223 ORTHO05D006449 1.5e-285 986.5 1019 54.2
Thecc.03G122800 Theobroma cacao HOM05D005223 ORTHO05D006449 1.9e-285 986.1 1022 54.7
TWI14G1297 Tripterygium wilfordii HOM05D005223 ORTHO05D006449 2.5e-285 985.7 1017 53.7
CAN.G1110.40 Capsicum annuum HOM05D005223 ORTHO05D006449 3.3e-285 985.3 1013 55.0
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 3.3e-285 985.3 1002 54.8
Lj9C475T6 Lonicera japonica HOM05D005223 ORTHO05D006449 5.6e-285 984.6 1050 53.2
Gorai.001G061400 Gossypium raimondii HOM05D005223 ORTHO05D006449 7.3e-285 984.2 1026 53.7
FAN13G2650 Fragaria x ananassa HOM05D005223 ORTHO05D006449 4.7e-284 981.5 1028 53.4
FAN18G3380 Fragaria x ananassa HOM05D005223 ORTHO05D006449 1.4e-283 979.9 1024 53.6
HanXRQChr05g0154741 Helianthus annuus HOM05D005223 ORTHO05D006449 2.4e-283 979.2 1033 53.3
Ciclev10018616m.g Citrus clementina HOM05D005223 ORTHO05D006449 6.8e-283 977.6 1027 53.8
FvH4_5g07490 Fragaria vesca HOM05D005223 ORTHO05D006449 2.0e-282 976.1 1024 53.5
Gohir.A07G053500 Gossypium hirsutum HOM05D005223 ORTHO05D006449 2.6e-282 975.7 1027 54.1
Hma1.2p1_0123F.1_g058130 Hydrangea macrophylla HOM05D005223 ORTHO05D006449 4.4e-282 974.9 869 59.8
FAN04G2946 Fragaria x ananassa HOM05D005223 ORTHO05D006449 6.4e-281 971.1 1023 53.1
Manes.06G115300 Manihot esculenta HOM05D005223 ORTHO05D006449 3.5e-279 965.3 1019 51.9
Phvul.009G168800 Phaseolus vulgaris HOM05D005223 ORTHO05D006449 8.7e-278 960.7 1020 53.4
Lsat_1_v5_gn_5_13240 Lactuca sativa HOM05D005223 ORTHO05D006449 4.3e-277 958.4 1012 53.1
CANSAT80G2773 Cannabis sativa HOM05D005223 ORTHO05D006449 2.1e-276 956.1 1018 52.0
Potri.015G090700 Populus trichocarpa HOM05D005223 ORTHO05D006449 1.4e-275 953.4 1021 51.9
Nn4g22461 Nelumbo nucifera HOM05D005223 ORTHO05D006449 1.8e-275 953.0 1029 52.8
Ca_16089_v3 Cicer arietinum L. HOM05D005223 ORTHO05D006449 4.0e-275 951.8 1016 51.9
DCAR_021603 Daucus carota HOM05D005223 ORTHO05D006449 7.6e-274 947.6 1003 52.8
Glyma.04G193000 Glycine max HOM05D005223 ORTHO05D006449 1.7e-273 946.4 1015 51.7
ECA246G2102 Erigeron canadensis HOM05D005223 ORTHO05D006449 4.9e-273 944.9 1030 52.1
Aqoxy5G03583 Aquilegia oxysepala HOM05D005223 ORTHO05D006449 8.4e-273 944.1 1033 51.7
Lj1g0000662 Lotus japonicus HOM05D005223 ORTHO05D006449 7.1e-272 941.0 1023 50.3
Medtr3g075100 Medicago truncatula HOM05D005223 ORTHO05D006449 2.1e-271 939.5 1019 50.8
Lalb_Chr08g0236961 Lupinus albus HOM05D005223 ORTHO05D006449 2.7e-271 939.1 1014 51.7
VMungo1309G0017 Vigna mungo HOM05D005223 ORTHO05D006449 3.9e-270 935.3 1026 51.8
ClCG03G003490 Citrullus lanatus HOM05D005223 ORTHO05D006449 1.1e-269 933.7 1013 50.9
COL.COLO4_09267 Corchorus olitorius HOM05D005223 ORTHO05D006449 1.1e-267 927.2 851 58.6
CsaV3_1G009290 Cucumis sativus L. HOM05D005223 ORTHO05D006449 3.4e-266 922.2 1018 50.1
TPR.G13978 Trifolium pratense HOM05D005223 ORTHO05D006449 6.4e-265 917.9 1022 50.3
Duzib084G0239 Durio zibethinus HOM05D005223 ORTHO05D006449 4.6e-263 911.8 1020 51.7
MELO3C002332.2 Cucumis melo HOM05D005223 ORTHO05D006449 7.9e-263 911.0 1013 49.6
PSO063G1058 Papaver somniferum HOM05D005223 ORTHO05D006449 3.9e-262 908.7 1018 50.1
Sed0011232 Sechium edule HOM05D005223 ORTHO05D006449 1.1e-261 907.1 1011 49.9
CiPaw.12G035700 Carya illinoinensis HOM05D005223 ORTHO05D006449 1.5e-258 896.7 911 54.7
Eucgr.L01337 Eucalyptus grandis HOM05D005223 ORTHO05D006449 1.9e-256 889.8 1024 49.8
arahy.Tifrunner.gnm1.ann1.D4E4RT Arachis hypogaea HOM05D005223 ORTHO05D006449 2.7e-255 885.9 1064 49.4
PGR083G1937 Punica granatum HOM05D005223 ORTHO05D006449 6.0e-255 884.8 1045 49.9
THA.LOC104818196 Tarenaya hassleriana HOM05D005223 ORTHO05D006449 1.9e-253 879.8 998 50.9
Sc10g0010350 Simmondsia chinensis HOM05D005223 ORTHO05D006449 9.6e-253 877.5 871 55.0
AUR62001278 Chenopodium quinoa HOM05D005223 ORTHO05D006449 1.7e-249 866.7 1008 48.8
EL10Ac7g18074 Beta vulgaris HOM05D005223 ORTHO05D006449 5.0e-249 865.1 980 49.9
AUR62025728 Chenopodium quinoa HOM05D005223 ORTHO05D006449 4.2e-248 862.1 1004 48.9
Sabra15G0112800 Salix brachista HOM05D005223 ORTHO05D000001 4.2e-248 862.1 837 55.2
AL5G27880 Arabidopsis lyrata HOM05D005223 ORTHO05D006449 1.5e-245 853.6 1030 48.8
Carub.0005s1465 Capsella rubella HOM05D005223 ORTHO05D006449 1.6e-244 850.1 1027 48.0
BcaC01g02344 Brassica carinata HOM05D005223 ORTHO05D006449 5.3e-243 845.1 1030 47.9
C03p66340 Brassica napus HOM05D005223 ORTHO05D006449 2.6e-242 842.8 1030 47.7
AT3G48470 Arabidopsis thaliana HOM05D005223 ORTHO05D006449 3.8e-241 839.0 1026 48.1
CDE02G2587 Ceratophyllum demersum HOM05D005223 ORTHO05D006449 3.8e-241 839.0 1038 47.4
CARHR157230 Cardamine hirsuta HOM05D005223 ORTHO05D006449 5.5e-240 835.1 1030 48.1
A06p27680 Brassica napus HOM05D005223 ORTHO05D006449 1.2e-239 833.9 1031 47.9
BcaB02g10650 Brassica carinata HOM05D005223 ORTHO05D006449 2.7e-239 832.8 1032 47.7
ATR0824G104 Amborella trichopoda HOM05D005223 ORTHO05D006449 4.6e-239 832.0 841 53.5
BraA06t25704Z Brassica rapa HOM05D005223 ORTHO05D006449 2.3e-238 829.7 1042 47.1
Sp5g13560 Schrenkiella parvula HOM05D005223 ORTHO05D006449 3.0e-238 829.3 1036 47.0
Glyma.06G172900 Glycine max HOM05D005223 ORTHO05D006449 2.8e-236 822.8 717 58.7
BolC3t18905H Brassica oleracea HOM05D005223 ORTHO05D006449 9.1e-235 817.8 1050 46.5
arahy.Tifrunner.gnm1.ann1.9N92ER Arachis hypogaea HOM05D005223 ORTHO05D006449 3.4e-234 815.8 777 58.3
Psat5g141880 Pisum sativum HOM05D005223 ORTHO05D006449 1.9e-232 810.1 912 50.5
Hund18539 Selenicereus undatus HOM05D005223 ORTHO05D006449 2.0e-229 800.0 869 51.0
Thhalv10010098m.g Eutrema salsugineum HOM05D005223 ORTHO05D006449 4.8e-228 795.4 1012 47.1
Zm00001eb246300 Zea mays HOM05D005223 ORTHO05D006449 2.2e-225 786.6 881 49.4
Os02g0598800 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 1.8e-219 766.9 871 49.4
Eucgr.B00148 Eucalyptus grandis HOM05D005223 ORTHO05D006449 3.5e-186 656.4 1028 42.5
Os02g0598400 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 3.3e-176 623.2 659 52.7
Os02g0599100 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 3.3e-176 623.2 659 52.7
Aa31LG4G17060 Aethionema arabicum HOM05D005223 ORTHO05D006449 1.2e-157 561.6 624 53.0
CSS0005553 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 1.4e-150 538.1 650 48.5
Cpa.g.sc52.35 Carica papaya HOM05D005223 ORTHO05D006449 4.8e-143 513.1 554 55.1
Mapoly0075s0016 Marchantia polymorpha HOM05D005223 ORTHO05D006449 2.3e-137 494.2 870 38.5
Oeu007006.1 Olea europaea HOM05D005223 ORTHO05D006449 2.5e-136 490.7 350 72.6
Pp3c24_17160 Physcomitrium patens HOM05D005223 ORTHO05D006449 4.3e-136 490.0 913 36.7
Actinidia19387 Actinidia chinensis HOM05D005223 ORTHO05D006449 5.3e-134 483.0 439 56.0
SHI10647 Sapria himalayana HOM05D005223 ORTHO05D006449 9.3e-131 472.2 530 51.1
SMO367G0489 Selaginella moellendorffii HOM05D005223 ORTHO05D006449 2.0e-117 427.9 819 36.8
CBR_g45764 Chara braunii HOM05D005223 ORTHO05D006449 6.1e-90 336.7 832 31.9
Oeu057221.1 Olea europaea HOM05D005223 ORTHO05D006449 7.5e-88 329.7 389 48.3
CBR_g52378 Chara braunii HOM05D005223 ORTHO05D006449 2.8e-87 327.8 838 31.7
FvH4_5g07461 Fragaria vesca HOM05D005223 ORTHO05D006449 1.1e-83 315.8 326 50.0
Aa31LG4G17050 Aethionema arabicum HOM05D005223 ORTHO05D006449 3.9e-52 211.1 442 33.7
FvH4_3g25520 Fragaria vesca HOM05D005223 ORTHO05D006449 1.9e-46 192.2 205 49.8
Nn8g40428 Nelumbo nucifera HOM05D005223 ORTHO05D006449 1.7e-44 185.7 148 60.1
Cpa.g.sc52.34 Carica papaya HOM05D005223 ORTHO05D006449 3.6e-42 177.9 336 33.9
MD06G1153900 Malus domestica HOM05D005223 ORTHO05D006449 5.4e-38 164.1 187 51.9
Lsat_1_v5_gn_0_22080 Lactuca sativa HOM05D005223 ORTHO05D006449 1.4e-33 149.4 149 47.0
FvH4_5g07361 Fragaria vesca HOM05D005223 ORTHO05D006449 9.9e-32 143.3 471 28.5
SalBow5G3736 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.5e-27 129.4 79 78.5
SEGI_05777 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 2.0e-24 119.0 146 43.2
Cre03.g186550 Chlamydomonas reinhardtii HOM05D005223 ORTHO05D006449 1.3e-23 116.3 328 30.5
SalBow1G2179 Salvia bowleyana HOM05D005223 ORTHO05D006449 3.2e-22 111.7 67 80.6
Nn7g38107 Nelumbo nucifera HOM05D005223 ORTHO05D006449 1.6e-21 109.4 102 51.0
SalBow1G1130 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.6e-21 109.4 67 79.1
Actinidia25613 Actinidia chinensis HOM05D005223 ORTHO05D006449 5.3e-17 94.4 126 42.9
Nn3g20975 Nelumbo nucifera HOM05D005223 ORTHO05D006449 2.6e-16 92.0 104 47.1
ECA246G0437 Erigeron canadensis HOM05D005223 ORTHO05D006449 3.4e-16 91.7 224 35.3
FvH4_5g07460 Fragaria vesca HOM05D005223 ORTHO05D006449 1.4e-14 86.3 228 33.8
Lsat_1_v5_gn_1_114041 Lactuca sativa HOM05D005223 ORTHO05D006449 6.1e-13 80.9 76 48.7
MBI11_g36316_MAGBIO Magnolia biondii HOM05D005223 ORTHO05D006449 3.0e-12 78.6 219 33.3
RcHm_v2.0_Chr0c39g0503251 Rosa chinensis HOM05D005223 ORTHO05D006449 2.5e-11 75.5 55 56.4
RcHm_v2.0_Chr1g0353191 Rosa chinensis HOM05D005223 ORTHO05D006449 2.5e-11 75.5 55 56.4
HPP92_024695 Vanilla planifolia HOM05D005223 ORTHO05D006449 1.6e-10 72.8 154 37.7
DCAR_016747 Daucus carota HOM05D000329 ORTHO05D006449 1.7e-07 62.8 39 66.7
Nitab4.5_0004801g0040 Nicotiana tabacum HOM05D000112 ORTHO05D001327 6.5e-07 60.8 44 56.8


User provided reference genes

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