Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold50G18535 Striga asiatica HOM05D004215 ORTHO05D005293 3.1e-215 751.5 378 100.0
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 2.1e-107 393.3 332 63.9
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 4.5e-105 385.6 289 71.3
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 1.3e-104 384.0 304 67.4
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 8.4e-104 381.3 290 69.3
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 3.2e-103 379.4 290 70.3
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 1.5e-100 370.5 286 67.8
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 3.7e-99 365.9 296 64.9
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 6.3e-99 365.2 276 70.3
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 5.9e-97 358.6 300 64.0
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 5.9e-97 358.6 313 63.3
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 5.9e-97 358.6 286 64.3
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 2.2e-96 356.7 302 64.2
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 2.2e-96 356.7 313 62.9
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 6.5e-96 355.1 317 61.2
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 1.1e-95 354.4 299 64.5
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 1.9e-95 353.6 301 64.5
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 4.2e-95 352.4 307 63.5
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 3.6e-94 349.4 307 62.2
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 3.6e-94 349.4 297 64.3
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 4.6e-94 349.0 302 61.6
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 5.1e-93 345.5 303 61.7
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 8.7e-93 344.7 289 63.0
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 8.7e-93 344.7 302 61.6
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 1.1e-92 344.4 298 61.7
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 4.3e-92 342.4 303 62.7
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 7.4e-92 341.7 302 59.3
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 9.7e-92 341.3 301 62.1
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 1.6e-91 340.5 308 61.7
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 2.8e-91 339.7 290 62.8
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 3.7e-91 339.3 292 61.3
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 4.8e-91 339.0 293 61.4
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 4.8e-91 339.0 299 61.5
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 4.8e-91 339.0 299 61.5
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 4.8e-91 339.0 299 60.9
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 4.8e-91 339.0 342 56.1
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 4.8e-91 339.0 342 56.1
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 4.8e-91 339.0 307 61.2
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 6.3e-91 338.6 295 61.0
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 6.3e-91 338.6 309 60.2
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 6.3e-91 338.6 295 65.1
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 8.2e-91 338.2 291 63.9
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.1e-90 337.8 270 64.4
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.1e-90 337.8 299 61.5
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 1.4e-90 337.4 312 58.3
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 1.4e-90 337.4 312 58.3
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 1.4e-90 337.4 281 64.8
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 1.8e-90 337.0 295 61.0
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 1.8e-90 337.0 295 61.0
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 2.4e-90 336.7 302 58.6
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 3.1e-90 336.3 306 61.1
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 3.1e-90 336.3 300 60.3
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 4.1e-90 335.9 308 58.8
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 4.1e-90 335.9 275 63.6
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 4.1e-90 335.9 304 59.9
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 9.1e-90 334.7 272 64.3
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 1.2e-89 334.3 293 60.8
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 1.2e-89 334.3 265 66.0
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 1.2e-89 334.3 287 60.3
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 1.5e-89 334.0 278 61.9
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.5e-89 334.0 299 60.9
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 1.5e-89 334.0 304 60.2
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 2.0e-89 333.6 301 60.1
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 2.6e-89 333.2 306 58.8
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 2.6e-89 333.2 291 61.2
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 2.6e-89 333.2 306 58.8
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 3.4e-89 332.8 307 60.3
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 4.5e-89 332.4 292 61.3
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 4.5e-89 332.4 275 62.2
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 4.5e-89 332.4 260 65.0
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 5.9e-89 332.0 307 57.7
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 5.9e-89 332.0 308 59.4
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 5.9e-89 332.0 262 66.4
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 7.7e-89 331.6 271 64.2
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 7.7e-89 331.6 287 61.0
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 1.0e-88 331.3 290 61.0
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 1.0e-88 331.3 290 61.0
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 1.0e-88 331.3 302 61.6
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 5.0e-88 328.9 304 58.2
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 6.5e-88 328.6 310 58.7
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 8.5e-88 328.2 281 61.6
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.4e-87 327.4 266 63.5
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 1.9e-87 327.0 281 61.2
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 1.9e-87 327.0 292 59.2
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 3.2e-87 326.2 308 57.1
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 5.5e-87 325.5 325 56.0
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 5.5e-87 325.5 289 60.2
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 5.5e-87 325.5 306 58.8
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 1.2e-86 324.3 289 59.9
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 1.2e-86 324.3 288 61.8
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 2.1e-86 323.6 295 59.0
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.7e-86 323.2 321 57.3
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 1.0e-85 321.2 310 57.7
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 1.0e-85 321.2 310 57.7
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 3.0e-85 319.7 324 54.3
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 8.8e-85 318.2 281 58.4
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 1.1e-84 317.8 312 59.3
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 5.7e-84 315.5 285 59.3
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 5.7e-84 315.5 293 58.7
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 4.8e-83 312.4 308 56.8
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 8.2e-83 311.6 246 64.6
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 6.9e-82 308.5 315 54.6
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 2.0e-81 307.0 278 59.0
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 2.6e-81 306.6 249 62.7
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 1.0e-80 304.7 312 56.1
MBI16_g21171_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 5.0e-80 302.4 313 56.9
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 1.9e-79 300.4 280 55.7
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 2.5e-79 300.1 280 55.7
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 6.1e-78 295.4 268 61.2
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 7.9e-78 295.0 266 59.8
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 6.7e-77 292.0 315 51.4
Nn4g24046 Nelumbo nucifera HOM05D004215 ORTHO05D005293 5.7e-76 288.9 227 64.3
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 3.7e-75 286.2 305 53.1
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 6.3e-75 285.4 262 54.2
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 3.5e-73 279.6 292 53.4
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 2.9e-72 276.6 296 51.7
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 3.8e-72 276.2 312 49.7
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 2.5e-71 273.5 294 53.4
Mapoly0004s0030 Marchantia polymorpha HOM05D004215 ORTHO05D005293 5.2e-69 265.8 305 48.2
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 3.7e-67 259.6 264 52.3
SMO174G0012 Selaginella moellendorffii HOM05D004215 ORTHO05D005293 8.2e-67 258.5 255 50.6
Pp3c16_22650 Physcomitrium patens HOM05D004215 ORTHO05D005293 1.2e-65 254.6 325 44.9
CDE04G0818 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 5.5e-63 245.7 204 59.3
Actinidia33607 Actinidia chinensis HOM05D004215 ORTHO05D005293 4.7e-62 242.7 304 44.7
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 2.2e-59 233.8 200 61.5
Gohir.A05G317200 Gossypium hirsutum HOM05D004215 ORTHO05D005293 4.8e-59 232.6 275 51.6
Zm00001eb241500 Zea mays HOM05D004215 ORTHO05D005293 3.1e-58 229.9 244 51.2
Actinidia15237 Actinidia chinensis HOM05D004215 ORTHO05D005293 4.1e-58 229.6 188 63.3
Zm00001eb121490 Zea mays HOM05D004215 ORTHO05D005293 4.1e-58 229.6 301 47.5
Os01g0120600 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 6.8e-53 212.2 224 50.0
GSVIVG01011796001 Vitis vinifera HOM05D004215 ORTHO05D005293 1.5e-52 211.1 155 69.7
Cc11_g09170 Coffea canephora HOM05D004215 ORTHO05D005293 8.3e-51 205.3 155 66.5
Lj6A750T89 Lonicera japonica HOM05D004215 ORTHO05D005293 1.0e-48 198.4 152 64.5
TPR.G4918 Trifolium pratense HOM05D004215 ORTHO05D005293 2.2e-43 180.6 116 75.9
vmacro01428 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 6.4e-43 179.1 129 68.2
vmacro01429 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 2.0e-41 174.1 121 69.4
Actinidia33626 Actinidia chinensis HOM05D004215 ORTHO05D005293 7.8e-41 172.2 205 50.2
Actinidia33606 Actinidia chinensis HOM05D004215 ORTHO05D005293 6.6e-40 169.1 326 34.7
BolC5t33841H Brassica oleracea HOM05D004215 ORTHO05D005293 5.6e-39 166.0 162 58.6
Actinidia16703 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.6e-38 163.3 248 42.7
Cre01.g000350 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D005293 9.8e-36 155.2 252 40.9
CBR_g23714 Chara braunii HOM05D004215 ORTHO05D005293 2.9e-27 127.1 211 38.9
arahy.Tifrunner.gnm1.ann1.B59VJ6 Arachis hypogaea HOM05D004215 ORTHO05D005293 1.1e-26 125.2 138 49.3
MCO13G089 Micromonas commoda HOM05D004215 ORTHO05D005293 1.9e-23 114.4 228 36.4
MBI10_g46302_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 3.3e-23 113.6 75 70.7
RcHm_v2.0_Chr6g0253871 Rosa chinensis HOM05D004215 ORTHO05D005293 4.3e-23 113.2 104 55.8
RcHm_v2.0_Chr2g0123901 Rosa chinensis HOM05D004215 ORTHO05D005293 8.9e-21 105.5 108 52.8
Actinidia24608 Actinidia chinensis HOM05D004215 ORTHO05D005293 7.6e-20 102.4 61 75.4
BolC2t11573H Brassica oleracea HOM05D004215 ORTHO05D005293 9.9e-20 102.1 147 48.3
C02p55250 Brassica napus HOM05D004215 ORTHO05D005293 2.9e-19 100.5 185 41.6
SMO201G0141 Selaginella moellendorffii HOM05D028400 ORTHO05D005293 5.4e-18 96.3 158 36.7
BcaB07g30283 Brassica carinata HOM05D004215 ORTHO05D005293 1.6e-17 94.7 67 67.2
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 2.5e-15 87.4 84 54.8
TPR.G10991 Trifolium pratense HOM05D004215 ORTHO05D005293 9.9e-12 75.5 72 56.9
BcaC03g17546 Brassica carinata HOM05D004215 ORTHO05D005293 1.3e-11 75.1 123 43.9
AagrBONN_evm.TU.Sc2ySwM_228.585 Anthoceros agrestis HOM05D004215 ORTHO05D018306 2.3e-08 64.3 280 23.2
SMO356G0347 Selaginella moellendorffii HOM05D004215 ORTHO05D018306 4.8e-06 56.6 158 24.7
Actinidia27648 Actinidia chinensis HOM05D004215 ORTHO05D052913 8.1e-06 55.8 155 32.3


User provided reference genes

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