Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold50G18532 Striga asiatica HOM05D005467 ORTHO05D006523 9.7e-289 996.1 507 100.0
Migut.L00653 Erythranthe guttata HOM05D005467 ORTHO05D006523 1.6e-174 616.7 452 70.4
Migut.L00826 Erythranthe guttata HOM05D005467 ORTHO05D006523 1.0e-173 614.0 452 70.1
Cfa008565 Carpinus fangiana HOM05D005467 ORTHO05D006523 1.4e-154 550.4 446 62.3
Potri.010G116200 Populus trichocarpa HOM05D005467 ORTHO05D006523 9.1e-154 547.7 447 62.9
TWI31G0476 Tripterygium wilfordii HOM05D005467 ORTHO05D006523 5.0e-152 542.0 440 61.8
GSVIVG01011792001 Vitis vinifera HOM05D005467 ORTHO05D006523 6.5e-152 541.6 440 63.6
RcHm_v2.0_Chr4g0433781 Rosa chinensis HOM05D005467 ORTHO05D006523 1.1e-151 540.8 440 63.4
PGR119G0286 Punica granatum HOM05D005467 ORTHO05D006523 4.2e-151 538.9 450 61.3
Thecc.02G211500 Theobroma cacao HOM05D005467 ORTHO05D006523 5.5e-151 538.5 440 61.4
FvH4_4g26200 Fragaria vesca HOM05D005467 ORTHO05D006523 2.7e-150 536.2 440 63.0
HanXRQChr15g0477671 Helianthus annuus HOM05D005467 ORTHO05D006523 4.7e-150 535.4 444 62.2
Hma1.2p1_0114F.1_g055340 Hydrangea macrophylla HOM05D005467 ORTHO05D006523 8.0e-150 534.6 454 60.8
CiPaw.05G246600 Carya illinoinensis HOM05D005467 ORTHO05D006523 1.0e-149 534.3 446 61.9
Ciclev10015390m.g Citrus clementina HOM05D005467 ORTHO05D006523 3.0e-149 532.7 440 62.0
CSS0047900 Camellia sinensis var. sinensis HOM05D005467 ORTHO05D006523 6.8e-149 531.6 449 61.9
Gorai.012G123600 Gossypium raimondii HOM05D005467 ORTHO05D006523 8.8e-149 531.2 440 61.1
Manes.06G062500 Manihot esculenta HOM05D005467 ORTHO05D006523 1.2e-148 530.8 449 60.6
DCAR_007277 Daucus carota HOM05D005467 ORTHO05D006523 3.4e-148 529.3 438 59.6
MD16G1031500 Malus domestica HOM05D005467 ORTHO05D006523 3.4e-148 529.3 450 60.7
Actinidia14942 Actinidia chinensis HOM05D005467 ORTHO05D006523 4.4e-148 528.9 446 62.3
TAR629G1677 Trochodendron aralioides HOM05D005467 ORTHO05D006523 4.4e-148 528.9 450 60.4
FAN07G0694 Fragaria x ananassa HOM05D005467 ORTHO05D006523 7.5e-148 528.1 440 62.5
Nn3g18021 Nelumbo nucifera HOM05D005467 ORTHO05D006523 9.8e-148 527.7 466 58.8
Gohir.A04G099200 Gossypium hirsutum HOM05D005467 ORTHO05D006523 3.7e-147 525.8 440 60.9
Sabra10G0086000 Salix brachista HOM05D005467 ORTHO05D006523 2.4e-146 523.1 485 57.3
Sabra10G0087600 Salix brachista HOM05D005467 ORTHO05D006523 7.0e-146 521.5 504 55.6
arahy.Tifrunner.gnm1.ann1.U1J3BU Arachis hypogaea HOM05D005467 ORTHO05D006523 1.3e-144 517.3 437 60.0
ECA246G2902 Erigeron canadensis HOM05D005467 ORTHO05D006523 1.7e-144 516.9 436 60.6
QL01p002615 Quercus lobata HOM05D005467 ORTHO05D006523 2.5e-143 513.1 532 52.3
Eucgr.G02222 Eucalyptus grandis HOM05D005467 ORTHO05D006523 2.1e-142 510.0 446 59.2
Glyma.10G266400 Glycine max HOM05D005467 ORTHO05D006523 6.1e-142 508.4 437 59.0
arahy.Tifrunner.gnm1.ann1.F0PHAM Arachis hypogaea HOM05D005467 ORTHO05D006523 1.8e-141 506.9 460 56.7
Cpa.g.sc65.104 Carica papaya HOM05D005467 ORTHO05D006523 4.0e-141 505.8 405 64.2
Sed0008724 Sechium edule HOM05D005467 ORTHO05D006523 3.4e-140 502.7 446 57.4
Lalb_Chr21g0308561 Lupinus albus HOM05D005467 ORTHO05D006523 4.4e-140 502.3 446 58.3
CsaV3_5G034840 Cucumis sativus L. HOM05D005467 ORTHO05D006523 5.7e-140 501.9 446 56.5
VMungo0720G1946 Vigna mungo HOM05D005467 ORTHO05D006523 5.7e-140 501.9 438 57.8
Peaxi162Scf00205g00928 Petunia axillaris HOM05D005467 ORTHO05D006523 7.5e-140 501.5 442 58.4
Phvul.007G035400 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 7.5e-140 501.5 437 58.6
Rhsim09G0101300 Rhododendron simsii HOM05D005467 ORTHO05D006523 1.3e-139 500.7 499 56.1
TPR.G4835 Trifolium pratense HOM05D005467 ORTHO05D006523 1.7e-139 500.4 450 57.8
Lj5g0001822 Lotus japonicus HOM05D005467 ORTHO05D006523 2.2e-139 500.0 450 56.9
Medtr1g108650 Medicago truncatula HOM05D005467 ORTHO05D006523 2.8e-139 499.6 449 57.7
Lj6C750G3 Lonicera japonica HOM05D005467 ORTHO05D006523 1.1e-138 497.7 441 59.6
CANSAT01G3134 Cannabis sativa HOM05D005467 ORTHO05D006523 2.4e-138 496.5 440 58.4
MSTRG.879 Avicennia marina HOM05D005467 ORTHO05D006523 7.0e-138 495.0 398 66.3
Glyma.20G124100 Glycine max HOM05D005467 ORTHO05D006523 2.7e-137 493.0 455 56.9
Sopen05g004250 Solanum pennellii HOM05D005467 ORTHO05D006523 2.7e-137 493.0 442 58.6
CAN.G1489.4 Capsicum annuum HOM05D005467 ORTHO05D006523 3.9e-136 489.2 453 57.6
PSO063G5439 Papaver somniferum HOM05D005467 ORTHO05D006523 1.5e-135 487.3 452 55.8
Psat6g222960 Pisum sativum HOM05D005467 ORTHO05D006523 1.5e-135 487.3 449 56.1
PSO782G0553 Papaver somniferum HOM05D005467 ORTHO05D006523 2.5e-135 486.5 456 55.7
FAN12G1869 Fragaria x ananassa HOM05D005467 ORTHO05D006523 3.3e-135 486.1 440 59.8
ClCG05G022280 Citrullus lanatus HOM05D005467 ORTHO05D006523 9.5e-135 484.6 520 50.4
Prupe.1G321400 Prunus persica HOM05D005467 ORTHO05D006523 9.5e-135 484.6 393 62.8
unitig_21.g20024 Utricularia gibba HOM05D000903 ORTHO05D000731 9.5e-135 484.6 416 61.5
FAN12G3855 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.2e-134 484.2 440 59.5
Nitab4.5_0000350g0200 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.2e-134 484.2 438 58.2
Hund24998 Selenicereus undatus HOM05D005467 ORTHO05D006523 1.8e-133 480.3 443 56.4
Aqoxy3G00153 Aquilegia oxysepala HOM05D005467 ORTHO05D006523 1.5e-132 477.2 448 55.6
Atru.chr11.358 Acer truncatum HOM05D005467 ORTHO05D006523 2.0e-132 476.9 409 60.9
MBI10_g46301_MAGBIO Magnolia biondii HOM05D005467 ORTHO05D006523 5.8e-132 475.3 391 60.9
Duzib248G1088 Durio zibethinus HOM05D005467 ORTHO05D006523 7.5e-132 474.9 418 59.1
Solyc05g008420.4 Solanum lycopersicum HOM05D005467 ORTHO05D006523 7.8e-129 464.9 425 57.9
AUR62014129 Chenopodium quinoa HOM05D005467 ORTHO05D006523 1.7e-128 463.8 466 53.2
Ah.02g128100 Amaranthus hybridus HOM05D005467 ORTHO05D006523 4.3e-127 459.1 462 51.9
Os01g0506200 Oryza sativa ssp. japonica HOM05D005467 ORTHO05D006523 2.1e-126 456.8 430 53.3
Ca_11108_v3 Cicer arietinum L. HOM05D005467 ORTHO05D006523 1.4e-125 454.1 450 53.6
Dinv05879 Davidia involucrata HOM05D005467 ORTHO05D006523 7.3e-119 431.8 337 65.9
AUR62039552 Chenopodium quinoa HOM05D005467 ORTHO05D006523 2.8e-118 429.9 431 53.4
TAR622G1271 Trochodendron aralioides HOM05D005467 ORTHO05D006523 5.8e-116 422.2 372 59.1
MELO3C012295.2 Cucumis melo HOM05D005467 ORTHO05D006523 3.7e-115 419.5 389 55.3
Gohir.D04G138632 Gossypium hirsutum HOM05D005467 ORTHO05D006523 3.7e-115 419.5 334 63.2
Cc11_g09130 Coffea canephora HOM05D005467 ORTHO05D006523 6.8e-109 398.7 299 66.9
Gohir.D04G138566 Gossypium hirsutum HOM05D005467 ORTHO05D006523 3.2e-106 389.8 300 64.0
Lsat_1_v5_gn_3_54101 Lactuca sativa HOM05D005467 ORTHO05D006523 5.4e-106 389.0 300 65.7
vmacro10622 Vaccinium macrocarpon HOM05D005467 ORTHO05D006523 1.7e-104 384.0 506 45.3
Nitab4.5_0004524g0030 Nicotiana tabacum HOM05D005467 ORTHO05D006523 3.2e-98 363.2 291 63.6
Nitab4.5_0000293g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.5e-95 354.4 456 42.3
SMO172G0164 Selaginella moellendorffii HOM05D005467 ORTHO05D006523 6.9e-93 345.5 432 43.8
Sc04g0005780 Simmondsia chinensis HOM05D005467 ORTHO05D006523 6.9e-93 345.5 277 63.9
ATR0041G011 Amborella trichopoda HOM05D005467 ORTHO05D006523 2.1e-89 334.0 435 42.8
HPP92_008650 Vanilla planifolia HOM05D005467 ORTHO05D006523 4.6e-89 332.8 302 54.3
Nitab4.5_0000350g0270 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.5e-87 327.0 454 40.3
Peaxi162Scf00159g00824 Petunia axillaris HOM05D005467 ORTHO05D006523 9.0e-85 318.5 553 36.7
AagrBONN_evm.TU.Sc2ySwM_344.4352 Anthoceros agrestis HOM05D005467 ORTHO05D006523 9.3e-82 308.5 441 39.7
Zm00001eb341680 Zea mays HOM05D005467 ORTHO05D006523 1.0e-80 305.1 341 47.8
CBR_g17592 Chara braunii HOM05D005467 ORTHO05D006523 1.8e-77 294.3 410 41.7
PGSC0003DMG400017873 Solanum tuberosum HOM05D005467 ORTHO05D006523 7.6e-76 288.9 436 38.1
Sopen02g012020 Solanum pennellii HOM05D005467 ORTHO05D006523 1.9e-74 284.3 445 36.4
Oeu064202.3 Olea europaea HOM05D005467 ORTHO05D006523 3.2e-74 283.5 274 55.1
PGSC0003DMG400029189 Solanum tuberosum HOM05D005467 ORTHO05D006523 3.2e-74 283.5 457 36.3
Peaxi162Scf00159g00823 Petunia axillaris HOM05D005467 ORTHO05D006523 3.9e-72 276.6 489 35.8
Pp3c22_2590 Physcomitrium patens HOM05D005467 ORTHO05D006523 8.7e-72 275.4 430 37.0
Sopen02g012000 Solanum pennellii HOM05D005467 ORTHO05D006523 2.2e-70 270.8 447 36.2
CDE06G2222 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 3.1e-69 266.9 299 49.8
Sopen02g012010 Solanum pennellii HOM05D005467 ORTHO05D006523 3.1e-69 266.9 456 35.1
SEGI_12457 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 2.0e-63 247.7 254 50.4
FAN17G2566 Fragaria x ananassa HOM05D005467 ORTHO05D006523 2.5e-63 247.3 219 59.8
Solyc02g038680.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.7e-59 234.6 446 35.0
Solyc02g038670.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 5.5e-58 229.6 421 35.2
Haze_11050 Corylus avellana HOM05D005467 ORTHO05D006523 4.1e-53 213.4 200 56.0
Solyc02g038650.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 3.5e-52 210.3 371 34.2
Dinv04888 Davidia involucrata HOM05D005467 ORTHO05D006523 7.7e-52 209.1 201 56.7
Lsat_1_v5_gn_3_86380 Lactuca sativa HOM05D005467 ORTHO05D006523 5.0e-51 206.5 219 53.4
Peaxi162Scf00205g00812 Petunia axillaris HOM05D005467 ORTHO05D006523 6.7e-48 196.1 431 32.5
Sopen02g012080 Solanum pennellii HOM05D005467 ORTHO05D006523 1.6e-44 184.9 392 32.7
PGSC0003DMG400029188 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.5e-42 178.3 348 33.9
Sed0021963 Sechium edule HOM05D005467 ORTHO05D006523 1.6e-41 174.9 234 43.6
RcHm_v2.0_Chr7g0235151 Rosa chinensis HOM05D005467 ORTHO05D006523 1.5e-39 168.3 104 79.8
MCO12G173 Micromonas commoda HOM05D005467 ORTHO05D006523 3.7e-38 163.7 400 31.5
Lsat_1_v5_gn_3_107041 Lactuca sativa HOM05D005467 ORTHO05D006523 3.1e-37 160.6 170 54.1
Cc11_g09120 Coffea canephora HOM05D005467 ORTHO05D006523 9.1e-37 159.1 117 65.0
PRCOL_00002109 Prasinoderma coloniale HOM05D005467 ORTHO05D006523 1.5e-34 151.8 425 29.2
Nitab4.5_0004524g0050 Nicotiana tabacum HOM05D005467 ORTHO05D006523 7.2e-34 149.4 147 52.4
Haze_11049 Corylus avellana HOM05D005467 ORTHO05D006523 2.1e-33 147.9 129 59.7
Lsat_1_v5_gn_4_96160 Lactuca sativa HOM05D005467 ORTHO05D006523 1.8e-32 144.8 95 72.6
Lsat_1_v5_gn_7_58700 Lactuca sativa HOM05D005467 ORTHO05D006523 2.3e-32 144.4 95 72.6
Solyc02g038660.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 5.7e-31 139.8 322 30.7
FAN17G1461 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.3e-30 138.7 143 54.5
PGSC0003DMG400023165 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.3e-30 138.7 213 39.4
Nitab4.5_0004367g0150 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.1e-29 135.6 164 42.1
RcHm_v2.0_Chr3g0493761 Rosa chinensis HOM05D005467 ORTHO05D006523 2.4e-29 134.4 85 77.6
Nitab4.5_0002820g0080 Nicotiana tabacum HOM05D005467 ORTHO05D006523 3.8e-27 127.1 153 41.8
PGSC0003DMG400017876 Solanum tuberosum HOM05D005467 ORTHO05D006523 5.0e-27 126.7 237 33.3
Nitab4.5_0000688g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.2e-23 115.5 157 39.5
Solyc02g038700.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.2e-23 115.5 288 28.8
Nitab4.5_0019054g0020 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.7e-22 111.7 242 36.0
Lsat_1_v5_gn_6_22900 Lactuca sativa HOM05D005467 ORTHO05D006523 6.4e-22 109.8 76 71.1
PGSC0003DMG400017875 Solanum tuberosum HOM05D005467 ORTHO05D006523 3.6e-17 94.0 77 57.1
CDE07G1108 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 2.0e-15 88.2 79 50.6
Nitab4.5_0002820g0070 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.0e-15 88.2 115 47.0
Phvul.008G137000 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 2.2e-14 84.7 43 86.0
PGSC0003DMG400038827 Solanum tuberosum HOM05D005467 ORTHO05D006523 2.0e-12 78.2 97 36.1
SEGI_39271 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 6.6e-11 73.2 85 50.6
MD05G1282800 Malus domestica HOM05D005467 ORTHO05D006523 3.3e-10 70.9 145 33.1
Cre12.g549600 Chlamydomonas reinhardtii HOM05D005467 ORTHO05D006523 5.6e-10 70.1 222 27.0
Lsat_1_v5_gn_9_124480 Lactuca sativa HOM05D001159 ORTHO05D001712 8.9e-08 62.8 42 66.7
arahy.Tifrunner.gnm1.ann1.68D7VA Arachis hypogaea HOM05D007334 ORTHO05D011873 2.2e-06 58.2 57 52.6
Solyc02g062200.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 8.3e-06 56.2 72 38.9


User provided reference genes

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