Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold50G18517 Striga asiatica HOM05D005313 ORTHO05D006317 2.6e-178 628.6 326 100.0
MSTRG.895 Avicennia marina HOM05D005313 ORTHO05D006317 1.8e-150 536.2 353 79.9
SalBow4G0219 Salvia bowleyana HOM05D005313 ORTHO05D006317 2.2e-148 529.3 353 79.9
Oeu024584.1 Olea europaea HOM05D005313 ORTHO05D006317 2.0e-141 506.1 348 76.4
Cc11_g08770 Coffea canephora HOM05D005313 ORTHO05D006317 2.4e-139 499.2 335 77.6
CSS0048776 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 1.7e-137 493.0 354 74.0
Lj6A747T68 Lonicera japonica HOM05D005313 ORTHO05D006317 2.9e-137 492.3 350 74.9
Rhsim02G0199800 Rhododendron simsii HOM05D005313 ORTHO05D006317 2.5e-136 489.2 354 73.4
Migut.L00987 Erythranthe guttata HOM05D005313 ORTHO05D006317 7.2e-136 487.6 293 84.3
vmacro10642 Vaccinium macrocarpon HOM05D005313 ORTHO05D006317 2.1e-135 486.1 354 73.7
SalBow4G0808 Salvia bowleyana HOM05D005313 ORTHO05D006317 3.6e-135 485.3 293 85.0
Solyc05g008180.3 Solanum lycopersicum HOM05D005313 ORTHO05D006317 4.7e-135 485.0 335 75.8
TAR623G0220 Trochodendron aralioides HOM05D005313 ORTHO05D006317 8.0e-135 484.2 350 72.6
Sopen05g004020 Solanum pennellii HOM05D005313 ORTHO05D006317 3.0e-134 482.3 335 75.5
COL.COLO4_20475 Corchorus olitorius HOM05D005313 ORTHO05D006317 1.2e-133 480.3 355 72.4
Phvul.003G023500 Phaseolus vulgaris HOM05D005313 ORTHO05D006317 1.5e-133 479.9 357 72.8
Peaxi162Scf00159g00112 Petunia axillaris HOM05D005313 ORTHO05D006317 2.6e-133 479.2 346 75.1
TWI31G1405 Tripterygium wilfordii HOM05D005313 ORTHO05D006317 4.4e-133 478.4 340 73.5
Glyma.09G118600 Glycine max HOM05D005313 ORTHO05D006317 7.5e-133 477.6 357 72.3
Atru.chr9.122 Acer truncatum HOM05D005313 ORTHO05D006317 1.3e-132 476.9 335 75.8
Peaxi162Scf00450g00614 Petunia axillaris HOM05D005313 ORTHO05D006317 2.2e-132 476.1 345 74.8
Potri.008G128900 Populus trichocarpa HOM05D005313 ORTHO05D006317 3.7e-132 475.3 337 74.5
Nitab4.5_0000742g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 4.8e-132 474.9 350 72.6
THA.LOC104805057 Tarenaya hassleriana HOM05D005313 ORTHO05D006317 4.8e-132 474.9 354 72.6
Medtr1g030750 Medicago truncatula HOM05D005313 ORTHO05D006317 6.3e-132 474.6 349 73.1
Lj2g0003652 Lotus japonicus HOM05D005313 ORTHO05D006317 8.2e-132 474.2 335 74.3
Lalb_Chr17g0338641 Lupinus albus HOM05D005313 ORTHO05D006317 8.2e-132 474.2 353 72.2
Glyma.02G238100 Glycine max HOM05D005313 ORTHO05D006317 1.1e-131 473.8 357 72.0
PGSC0003DMG400030501 Solanum tuberosum HOM05D005313 ORTHO05D006317 4.1e-131 471.9 316 77.8
Eucgr.G02191 Eucalyptus grandis HOM05D005313 ORTHO05D006317 5.3e-131 471.5 338 74.6
Thecc.02G280500 Theobroma cacao HOM05D005313 ORTHO05D006317 5.3e-131 471.5 335 74.6
FvH4_4g32330 Fragaria vesca HOM05D005313 ORTHO05D006317 7.0e-131 471.1 352 72.4
Psat6g042560 Pisum sativum HOM05D005313 ORTHO05D006317 7.0e-131 471.1 350 72.3
GSVIVG01011763001 Vitis vinifera HOM05D005313 ORTHO05D006317 9.1e-131 470.7 315 78.1
BcaB07g30404 Brassica carinata HOM05D005313 ORTHO05D006317 2.0e-130 469.5 352 72.2
Sp2g12800 Schrenkiella parvula HOM05D005313 ORTHO05D006317 2.0e-130 469.5 338 74.0
HanXRQChr15g0488661 Helianthus annuus HOM05D005313 ORTHO05D006317 2.7e-130 469.2 316 77.2
Manes.17G006600 Manihot esculenta HOM05D005313 ORTHO05D006317 2.7e-130 469.2 335 73.4
RcHm_v2.0_Chr4g0441121 Rosa chinensis HOM05D005313 ORTHO05D006317 3.5e-130 468.8 352 71.9
VMungo1215G0481 Vigna mungo HOM05D005313 ORTHO05D006317 3.5e-130 468.8 350 72.6
PSO384G2037 Papaver somniferum HOM05D005313 ORTHO05D006317 7.7e-130 467.6 341 72.1
PGR119G0894 Punica granatum HOM05D005313 ORTHO05D006317 1.3e-129 466.8 330 73.9
C02p49400 Brassica napus HOM05D005313 ORTHO05D006317 3.8e-129 465.3 352 71.9
Thhalv10000908m.g Eutrema salsugineum HOM05D005313 ORTHO05D006317 3.8e-129 465.3 351 72.1
Gohir.A01G152800 Gossypium hirsutum HOM05D005313 ORTHO05D006317 5.0e-129 464.9 356 70.2
Gorai.002G179900 Gossypium raimondii HOM05D005313 ORTHO05D006317 5.0e-129 464.9 356 70.5
Carub.0005s0033 Capsella rubella HOM05D005313 ORTHO05D006317 8.5e-129 464.2 331 74.6
AL5G10310 Arabidopsis lyrata HOM05D005313 ORTHO05D006317 1.1e-128 463.8 350 71.7
PSO339G3364 Papaver somniferum HOM05D005313 ORTHO05D006317 1.1e-128 463.8 341 72.1
AT2G01350 Arabidopsis thaliana HOM05D005313 ORTHO05D006317 1.9e-128 463.0 350 72.0
MD16G1029000 Malus domestica HOM05D005313 ORTHO05D006317 1.9e-128 463.0 335 73.7
CARHR143870 Cardamine hirsuta HOM05D005313 ORTHO05D006317 2.5e-128 462.6 337 73.3
A02p31910 Brassica napus HOM05D005313 ORTHO05D006317 3.2e-128 462.2 353 71.4
BolC2t11026H Brassica oleracea HOM05D005313 ORTHO05D006317 3.2e-128 462.2 353 71.4
BraA02t08201Z Brassica rapa HOM05D005313 ORTHO05D006317 3.2e-128 462.2 353 71.4
Lsat_1_v5_gn_3_54641 Lactuca sativa HOM05D005313 ORTHO05D006317 3.2e-128 462.2 335 72.8
ECA246G2448 Erigeron canadensis HOM05D005313 ORTHO05D006317 4.2e-128 461.8 355 70.4
FAN17G2517 Fragaria x ananassa HOM05D005313 ORTHO05D006317 7.2e-128 461.1 376 68.6
Prupe.1G323900 Prunus persica HOM05D005313 ORTHO05D006317 7.2e-128 461.1 335 73.4
BcaC03g17029 Brassica carinata HOM05D005313 ORTHO05D006317 9.4e-128 460.7 353 71.1
Gohir.D01G145600 Gossypium hirsutum HOM05D005313 ORTHO05D006317 2.7e-127 459.1 357 69.5
CDE05G1915 Ceratophyllum demersum HOM05D005313 ORTHO05D006317 4.7e-127 458.4 351 69.2
QL01p001863 Quercus lobata HOM05D005313 ORTHO05D006317 6.1e-127 458.0 315 76.5
Cfa008602 Carpinus fangiana HOM05D005313 ORTHO05D006317 1.0e-126 457.2 316 76.6
Aa31LG2G8560 Aethionema arabicum HOM05D005313 ORTHO05D006317 1.8e-126 456.4 347 71.5
Ca_25713_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 1.8e-126 456.4 369 67.5
FAN22G0311 Fragaria x ananassa HOM05D005313 ORTHO05D006317 6.8e-126 454.5 376 67.8
Sed0021241 Sechium edule HOM05D005313 ORTHO05D006317 2.6e-125 452.6 335 71.0
AUR62017725 Chenopodium quinoa HOM05D005313 ORTHO05D006317 3.4e-125 452.2 311 76.5
Sc14g0007170 Simmondsia chinensis HOM05D005313 ORTHO05D006317 3.4e-125 452.2 318 74.5
Aqoxy1G00025 Aquilegia oxysepala HOM05D005313 ORTHO05D006317 4.4e-125 451.8 313 75.1
FAN07G2253 Fragaria x ananassa HOM05D005313 ORTHO05D006317 4.8e-124 448.4 377 66.6
CsaV3_5G013570 Cucumis sativus L. HOM05D005313 ORTHO05D006317 6.3e-124 448.0 345 69.0
MELO3C018332.2 Cucumis melo HOM05D005313 ORTHO05D006317 1.1e-123 447.2 349 68.2
Sabra08G0097700 Salix brachista HOM05D005313 ORTHO05D006317 7.0e-123 444.5 398 62.8
Dinv17424 Davidia involucrata HOM05D005313 ORTHO05D006317 9.1e-123 444.1 293 76.8
CANSAT01G3269 Cannabis sativa HOM05D005313 ORTHO05D006317 2.0e-122 443.0 326 71.2
Hund08629 Selenicereus undatus HOM05D005313 ORTHO05D006317 3.5e-122 442.2 311 74.6
EL10Ac7g15995 Beta vulgaris HOM05D005313 ORTHO05D006317 8.6e-121 437.6 311 74.6
Os09g0553600 Oryza sativa ssp. japonica HOM05D005313 ORTHO05D006317 3.2e-120 435.6 354 65.8
AUR62032955 Chenopodium quinoa HOM05D005313 ORTHO05D006317 3.6e-119 432.2 353 67.4
Duzib248G1474 Durio zibethinus HOM05D005313 ORTHO05D006317 3.0e-118 429.1 274 78.8
CAN.G1334.2 Capsicum annuum HOM05D005313 ORTHO05D006317 4.0e-118 428.7 287 78.7
Zm00001eb104420 Zea mays HOM05D005313 ORTHO05D006317 5.2e-118 428.3 342 67.0
unitig_0.g2330 Utricularia gibba HOM05D005313 ORTHO05D006317 1.2e-117 427.2 328 70.4
HPP92_025383 Vanilla planifolia HOM05D005313 ORTHO05D006317 2.6e-117 426.0 339 65.5
Ciclev10018157m.g Citrus clementina HOM05D005313 ORTHO05D006317 6.3e-116 421.4 294 76.5
Haze_11011 Corylus avellana HOM05D005313 ORTHO05D006317 1.1e-115 420.6 289 75.4
CiPaw.06G012200 Carya illinoinensis HOM05D005313 ORTHO05D006317 2.7e-114 416.0 293 73.7
Ah.01g012630 Amaranthus hybridus HOM05D005313 ORTHO05D006317 6.6e-113 411.4 321 70.4
BcaC03g17031 Brassica carinata HOM05D005313 ORTHO05D006317 1.1e-112 410.6 353 66.6
Duzib248G1582 Durio zibethinus HOM05D005313 ORTHO05D006317 1.2e-111 407.1 335 66.3
Pp3c8_18030 Physcomitrium patens HOM05D005313 ORTHO05D006317 6.8e-110 401.4 314 65.6
FAN12G1743 Fragaria x ananassa HOM05D005313 ORTHO05D006317 2.4e-107 392.9 406 57.9
Cpa.g.sc65.129 Carica papaya HOM05D005313 ORTHO05D006317 7.0e-107 391.3 330 64.5
arahy.Tifrunner.gnm1.ann1.Y1EHRK Arachis hypogaea HOM05D005313 ORTHO05D006317 1.2e-103 380.6 329 63.5
SMO164G0169 Selaginella moellendorffii HOM05D005313 ORTHO05D006317 4.7e-103 378.6 317 62.5
arahy.Tifrunner.gnm1.ann1.G5QWBZ Arachis hypogaea HOM05D005313 ORTHO05D006317 5.2e-102 375.2 338 62.1
Nn2g15695 Nelumbo nucifera HOM05D005313 ORTHO05D006317 2.4e-99 366.3 338 62.1
DCAR_023608 Daucus carota HOM05D005313 ORTHO05D006317 1.3e-97 360.5 215 84.2
Mapoly0011s0070 Marchantia polymorpha HOM05D005313 ORTHO05D006317 2.3e-97 359.8 314 59.6
CBR_g30917 Chara braunii HOM05D005313 ORTHO05D006317 7.3e-96 354.8 331 58.9
Ca_12605_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 2.1e-95 353.2 217 80.6
Nitab4.5_0004816g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 8.3e-92 341.3 242 75.2
SEGI_23840 Sequoiadendron giganteum HOM05D005313 ORTHO05D006317 1.9e-91 340.1 227 74.4
Migut.L00982 Erythranthe guttata HOM05D005313 ORTHO05D006317 3.6e-71 272.7 329 51.7
MCO15G382 Micromonas commoda HOM05D005313 ORTHO05D006317 2.4e-70 270.0 294 52.4
PRCOL_00006420 Prasinoderma coloniale HOM05D005313 ORTHO05D006317 4.0e-70 269.2 313 48.2
Cre02.g141200 Chlamydomonas reinhardtii HOM05D005313 ORTHO05D006317 9.0e-70 268.1 308 51.0
Potri.010G113500 Populus trichocarpa HOM05D005313 ORTHO05D006317 1.7e-68 263.8 212 64.6
AagrBONN_evm.TU.Sc2ySwM_117.3802 Anthoceros agrestis HOM05D005313 ORTHO05D006317 7.1e-67 258.5 196 65.8
ClCG07G006260 Citrullus lanatus HOM05D005313 ORTHO05D006317 2.8e-63 246.5 187 71.1
Actinidia26811 Actinidia chinensis HOM05D005313 ORTHO05D006317 1.1e-62 244.6 151 79.5
ATR0807G196 Amborella trichopoda HOM05D005313 ORTHO05D006317 1.1e-62 244.6 192 69.3
CsaV3_UNG236450 Cucumis sativus L. HOM05D005313 ORTHO05D006317 9.3e-59 231.5 286 49.3
Zm00001eb320780 Zea mays HOM05D005313 ORTHO05D006317 1.9e-56 223.8 220 56.8
Dinv05167 Davidia involucrata HOM05D005313 ORTHO05D006317 1.3e-52 211.1 133 80.5
SHI04675 Sapria himalayana HOM05D005313 ORTHO05D006317 5.1e-49 199.1 161 63.4
SHI04677 Sapria himalayana HOM05D005313 ORTHO05D006317 5.9e-45 185.7 138 71.0
AagrBONN_evm.TU.Sc2ySwM_368.1836 Anthoceros agrestis HOM05D005313 ORTHO05D006317 1.4e-38 164.5 153 54.9
A06p44480 Brassica napus HOM05D005313 ORTHO05D006317 2.6e-37 160.2 231 47.6
Sabra10G0083500 Salix brachista HOM05D005313 ORTHO05D006317 5.0e-36 156.0 297 38.7
ClCG07G006250 Citrullus lanatus HOM05D005313 ORTHO05D006317 1.1e-35 154.8 110 66.4
RcHm_v2.0_Chr2g0157601 Rosa chinensis HOM05D005313 ORTHO05D006317 7.2e-35 152.1 123 62.6
Actinidia14964 Actinidia chinensis HOM05D005313 ORTHO05D006317 1.7e-31 141.0 256 37.5
COL.COLO4_10085 Corchorus olitorius HOM05D005313 ORTHO05D006317 1.8e-30 137.5 85 75.3
Ca_31307_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 1.6e-26 124.4 272 33.1
CSS0042289 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 4.8e-23 112.8 126 51.6
TPR.G36912 Trifolium pratense HOM05D005313 ORTHO05D006317 1.7e-20 104.4 88 61.4
Oeu045874.1 Olea europaea HOM05D005313 ORTHO05D006317 5.0e-20 102.8 243 36.2
COL.COLO4_10084 Corchorus olitorius HOM05D005313 ORTHO05D006317 6.7e-17 92.4 53 81.1
Aa31LG11G8280 Aethionema arabicum HOM05D005313 ORTHO05D006317 1.5e-16 91.3 62 72.6
CAN.G1020.2 Capsicum annuum HOM05D005313 ORTHO05D006317 1.5e-16 91.3 108 49.1
Aa31LG11G8270 Aethionema arabicum HOM05D005313 ORTHO05D006317 4.8e-15 86.3 73 65.8
Glyma.07G165500 Glycine max HOM05D005313 ORTHO05D006317 6.3e-15 85.9 66 71.2
CsaV3_UNG236470 Cucumis sativus L. HOM05D005313 ORTHO05D006317 5.3e-14 82.8 65 69.2
Actinidia01955 Actinidia chinensis HOM05D005313 ORTHO05D006317 2.5e-11 73.9 43 74.4
TPR.G36891 Trifolium pratense HOM05D005313 ORTHO05D006317 2.1e-10 70.9 101 47.5
AagrBONN_evm.TU.Sc2ySwM_117.3801 Anthoceros agrestis HOM05D005313 ORTHO05D006317 5.7e-08 62.8 79 44.3
Oeu045873.1 Olea europaea HOM05D005313 ORTHO05D006317 6.3e-07 59.3 34 79.4
DCAR_023607 Daucus carota HOM05D005313 ORTHO05D006317 1.8e-06 57.8 52 61.5
MBI06_g07791_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.1e-06 57.0 33 87.9


User provided reference genes

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