Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold50G18488 Striga asiatica HOM05D066152 ORTHO05D406229 4.7e-177 624.4 308 100.0
SGA_v2.0_scaffold98G29357 Striga asiatica HOM05D066152 ORTHO05D401462 7.4e-74 281.6 274 58.8
Aa31LG2G6170 Aethionema arabicum HOM05D003413 ORTHO05D004197 5.4e-08 62.8 168 31.5
Aa31LG1G1740 Aethionema arabicum HOM05D003413 ORTHO05D004197 9.2e-08 62.0 168 31.5
AL5G15110 Arabidopsis lyrata HOM05D003413 ORTHO05D004197 1.2e-07 61.6 168 31.0
AT3G26340 Arabidopsis thaliana HOM05D003413 ORTHO05D004197 1.2e-07 61.6 168 31.0
BcaB08g34231 Brassica carinata HOM05D003413 ORTHO05D004197 1.2e-07 61.6 168 31.0
BcaNung06606 Brassica carinata HOM05D003413 ORTHO05D004197 1.2e-07 61.6 168 31.0
A06p08660 Brassica napus HOM05D003413 ORTHO05D004197 1.2e-07 61.6 168 31.0
A08p32480 Brassica napus HOM05D003413 ORTHO05D004197 1.2e-07 61.6 168 31.0
A09p63450 Brassica napus HOM05D003413 ORTHO05D004197 1.2e-07 61.6 168 31.0
C08p15800 Brassica napus HOM05D003413 ORTHO05D004197 1.2e-07 61.6 168 31.0
C08p46910 Brassica napus HOM05D003413 ORTHO05D004197 1.2e-07 61.6 168 31.0
BolC8t49206H Brassica oleracea HOM05D003413 ORTHO05D004197 1.2e-07 61.6 168 31.0
BolC8t52226H Brassica oleracea HOM05D003413 ORTHO05D004197 1.2e-07 61.6 168 31.0
BraA08t35172Z Brassica rapa HOM05D003413 ORTHO05D004197 1.2e-07 61.6 168 31.0
BraA09t41695Z Brassica rapa HOM05D003413 ORTHO05D004197 1.2e-07 61.6 168 31.0
Carub.0005s0426 Capsella rubella HOM05D003413 ORTHO05D004197 1.2e-07 61.6 168 31.0
CARHR013390 Cardamine hirsuta HOM05D003413 ORTHO05D004197 1.2e-07 61.6 168 31.0
CARHR147350 Cardamine hirsuta HOM05D003413 ORTHO05D004197 1.2e-07 61.6 168 31.0
Haze_12385 Corylus avellana HOM05D003413 ORTHO05D004197 1.2e-07 61.6 179 29.6
Thhalv10004762m.g Eutrema salsugineum HOM05D003413 ORTHO05D004197 1.2e-07 61.6 168 31.0
Sp1g11610 Schrenkiella parvula HOM05D003413 ORTHO05D004197 1.2e-07 61.6 168 31.0
Sp2g15490 Schrenkiella parvula HOM05D003413 ORTHO05D004197 1.2e-07 61.6 168 31.0
THA.LOC104812691 Tarenaya hassleriana HOM05D003413 ORTHO05D004197 1.2e-07 61.6 168 31.0
THA.LOC104814351 Tarenaya hassleriana HOM05D003413 ORTHO05D004197 1.6e-07 61.2 168 31.0
DCAR_026471 Daucus carota HOM05D003413 ORTHO05D004197 2.1e-07 60.8 168 31.5
BcaC05g25088 Brassica carinata HOM05D003413 ORTHO05D004197 2.7e-07 60.5 168 30.4
C05p10270 Brassica napus HOM05D003413 ORTHO05D004197 2.7e-07 60.5 168 30.4
BolC5t29773H Brassica oleracea HOM05D003413 ORTHO05D004197 2.7e-07 60.5 168 30.4
BraA06t24062Z Brassica rapa HOM05D003413 ORTHO05D004197 2.7e-07 60.5 168 30.4
Lsat_1_v5_gn_8_149501 Lactuca sativa HOM05D003413 ORTHO05D004197 3.5e-07 60.1 168 31.5
PSO063G0094 Papaver somniferum HOM05D003413 ORTHO05D004197 4.6e-07 59.7 182 28.6
PSO782G4279 Papaver somniferum HOM05D003413 ORTHO05D004197 4.6e-07 59.7 182 28.6
PGR119G0878 Punica granatum HOM05D003413 ORTHO05D004197 4.6e-07 59.7 173 30.1
Cc11_g16770 Coffea canephora HOM05D003413 ORTHO05D004197 6.0e-07 59.3 187 28.3
Aqoxy5G03439 Aquilegia oxysepala HOM05D003413 ORTHO05D004197 7.8e-07 58.9 168 31.0
AL1G24710 Arabidopsis lyrata HOM05D003413 ORTHO05D004197 7.8e-07 58.9 168 30.4
AT1G13060 Arabidopsis thaliana HOM05D003413 ORTHO05D004197 7.8e-07 58.9 168 30.4
Carub.0001s1281 Capsella rubella HOM05D003413 ORTHO05D004197 7.8e-07 58.9 168 30.4
Cfa009337 Carpinus fangiana HOM05D003413 ORTHO05D004197 7.8e-07 58.9 168 31.0
Cfa020602 Carpinus fangiana HOM05D003413 ORTHO05D004197 7.8e-07 58.9 168 31.0
Thhalv10008454m.g Eutrema salsugineum HOM05D003413 ORTHO05D004197 7.8e-07 58.9 168 30.4
MBI04_g08407_MAGBIO Magnolia biondii HOM05D003413 ORTHO05D004197 7.8e-07 58.9 168 31.0
Manes.12G013500 Manihot esculenta HOM05D003413 ORTHO05D004197 7.8e-07 58.9 168 31.0
Manes.13G017700 Manihot esculenta HOM05D003413 ORTHO05D004197 7.8e-07 58.9 168 31.0
QL04p035333 Quercus lobata HOM05D003413 ORTHO05D004197 7.8e-07 58.9 168 31.0
vmacro20451 Vaccinium macrocarpon HOM05D003413 ORTHO05D004197 7.8e-07 58.9 168 31.0
VMungo1309G0564 Vigna mungo HOM05D003413 ORTHO05D004197 7.8e-07 58.9 168 31.0
Dinv10975 Davidia involucrata HOM05D003413 ORTHO05D004197 1.0e-06 58.5 168 30.4
Glyma.04G194700 Glycine max HOM05D003413 ORTHO05D004197 1.0e-06 58.5 168 30.4
Glyma.06G171200 Glycine max HOM05D003413 ORTHO05D004197 1.0e-06 58.5 168 30.4
Phvul.009G167300 Phaseolus vulgaris HOM05D003413 ORTHO05D004197 1.0e-06 58.5 168 30.4
TAR629G2699 Trochodendron aralioides HOM05D003413 ORTHO05D004197 1.0e-06 58.5 168 30.4
GSVIVG01010375001 Vitis vinifera HOM05D003413 ORTHO05D004197 1.0e-06 58.5 168 30.4
Atru.chr11.2293 Acer truncatum HOM05D003413 ORTHO05D004197 1.3e-06 58.2 168 30.4
ATR1120G105 Amborella trichopoda HOM05D003413 ORTHO05D004197 1.3e-06 58.2 168 30.4
CiPaw.05G112700 Carya illinoinensis HOM05D003413 ORTHO05D004197 1.3e-06 58.2 182 28.6
CiPaw.06G100800 Carya illinoinensis HOM05D003413 ORTHO05D004197 1.3e-06 58.2 179 29.1
CsaV3_5G030400 Cucumis sativus L. HOM05D003413 ORTHO05D004197 1.3e-06 58.2 168 29.8
Eucgr.H04655 Eucalyptus grandis HOM05D003413 ORTHO05D004197 1.3e-06 58.2 168 30.4
Medtr3g089040 Medicago truncatula HOM05D003413 ORTHO05D004197 1.3e-06 58.2 168 29.8
Oeu056675.1 Olea europaea HOM05D003413 ORTHO05D004197 1.3e-06 58.2 171 29.8
Cpa.g.sc43.24 Carica papaya HOM05D003413 ORTHO05D004197 1.7e-06 57.8 168 30.4
Ca_24508_v3 Cicer arietinum L. HOM05D003413 ORTHO05D004197 1.7e-06 57.8 168 30.4
Dinv14816 Davidia involucrata HOM05D003413 ORTHO05D004197 1.7e-06 57.8 168 29.8
Gohir.D04G181800 Gossypium hirsutum HOM05D003413 ORTHO05D004197 1.7e-06 57.8 171 29.2
Gorai.012G175200 Gossypium raimondii HOM05D003413 ORTHO05D004197 1.7e-06 57.8 171 29.2
Lj1g0010419 Lotus japonicus HOM05D003413 ORTHO05D004197 1.7e-06 57.8 168 29.8
Nn3g16510 Nelumbo nucifera HOM05D003413 ORTHO05D004197 1.7e-06 57.8 168 30.4
Pp3c11_2970 Physcomitrium patens HOM05D003413 ORTHO05D004197 1.7e-06 57.8 171 29.2
Potri.010G058100 Populus trichocarpa HOM05D003413 ORTHO05D004197 1.7e-06 57.8 190 27.9
Rhsim12G0028500 Rhododendron simsii HOM05D003413 ORTHO05D004197 1.7e-06 57.8 171 29.8
Sed0004676 Sechium edule HOM05D003413 ORTHO05D004197 1.7e-06 57.8 168 30.4
Thecc.02G276700 Theobroma cacao HOM05D003413 ORTHO05D004197 1.7e-06 57.8 168 30.4
CSS0015662 Camellia sinensis var. sinensis HOM05D003413 ORTHO05D004197 2.3e-06 57.4 168 30.4
ECA233G4198 Erigeron canadensis HOM05D003413 ORTHO05D004197 2.3e-06 57.4 168 30.4
ECA246G0095 Erigeron canadensis HOM05D003413 ORTHO05D004197 2.3e-06 57.4 168 30.4
HanXRQChr12g0372411 Helianthus annuus HOM05D003413 ORTHO05D004197 2.3e-06 57.4 168 30.4
Lalb_Chr07g0183311 Lupinus albus HOM05D003413 ORTHO05D004197 2.3e-06 57.4 168 29.8
Oeu020301.1 Olea europaea HOM05D003413 ORTHO05D004197 2.3e-06 57.4 168 29.8
Psat0s14g0120 Pisum sativum HOM05D003413 ORTHO05D004197 2.3e-06 57.4 168 29.8
Sed0019386 Sechium edule HOM05D003413 ORTHO05D004197 2.3e-06 57.4 168 29.8
CsaV3_6G032330 Cucumis sativus L. HOM05D003413 ORTHO05D004197 3.0e-06 57.0 168 29.8
Nitab4.5_0000582g0200 Nicotiana tabacum HOM05D003413 ORTHO05D004197 3.0e-06 57.0 168 29.8
Nitab4.5_0004212g0060 Nicotiana tabacum HOM05D003413 ORTHO05D004197 3.0e-06 57.0 168 29.8
SalBow1G2866 Salvia bowleyana HOM05D003413 ORTHO05D004197 3.0e-06 57.0 190 27.9
Hund25449 Selenicereus undatus HOM05D003413 ORTHO05D004197 3.0e-06 57.0 196 28.6
Actinidia30663 Actinidia chinensis HOM05D003413 ORTHO05D004197 3.9e-06 56.6 168 30.4
MSTRG.2454 Avicennia marina HOM05D003413 ORTHO05D004197 3.9e-06 56.6 190 27.9
Duzib251G0571 Durio zibethinus HOM05D003413 ORTHO05D004197 3.9e-06 56.6 168 29.8
Gohir.A01G160500 Gossypium hirsutum HOM05D003413 ORTHO05D004197 3.9e-06 56.6 168 29.8
Gohir.D01G155200 Gossypium hirsutum HOM05D003413 ORTHO05D004197 3.9e-06 56.6 168 29.8
Gorai.002G192400 Gossypium raimondii HOM05D003413 ORTHO05D004197 3.9e-06 56.6 168 29.8
Lj3C1066T5 Lonicera japonica HOM05D003413 ORTHO05D004197 3.9e-06 56.6 168 30.4
Lalb_Chr12g0202151 Lupinus albus HOM05D003413 ORTHO05D004197 3.9e-06 56.6 168 29.8
Potri.008G177000 Populus trichocarpa HOM05D003413 ORTHO05D004197 3.9e-06 56.6 168 29.2
TWI18G0413 Tripterygium wilfordii HOM05D003413 ORTHO05D004197 3.9e-06 56.6 168 29.8
TWI36G0673 Tripterygium wilfordii HOM05D003413 ORTHO05D004197 3.9e-06 56.6 168 29.8
CANSAT01G2316 Cannabis sativa HOM05D003413 ORTHO05D004197 5.1e-06 56.2 168 29.8
Duzib268G0982 Durio zibethinus HOM05D003413 ORTHO05D004197 5.1e-06 56.2 168 29.2
HanXRQChr08g0207581 Helianthus annuus HOM05D003413 ORTHO05D004197 5.1e-06 56.2 168 29.8
Nitab4.5_0012482g0010 Nicotiana tabacum HOM05D003413 ORTHO05D004197 5.1e-06 56.2 168 29.8
Pp3c7_21050 Physcomitrium patens HOM05D003413 ORTHO05D004197 5.1e-06 56.2 167 28.7
SGA_v2.0_scaffold87G27141 Striga asiatica HOM05D003413 ORTHO05D004197 5.1e-06 56.2 168 29.8
CSS0027762 Camellia sinensis var. sinensis HOM05D003413 ORTHO05D004197 6.6e-06 55.8 168 29.8
FAN17G2448 Fragaria x ananassa HOM05D003413 ORTHO05D004197 6.6e-06 55.8 169 29.0
FAN22G2268 Fragaria x ananassa HOM05D003413 ORTHO05D004197 6.6e-06 55.8 169 29.0
Gohir.A04G138900 Gossypium hirsutum HOM05D003413 ORTHO05D004197 6.6e-06 55.8 168 29.8
MD16G1116800 Malus domestica HOM05D003413 ORTHO05D004197 6.6e-06 55.8 190 27.4
Peaxi162Scf00858g00310 Petunia axillaris HOM05D003413 ORTHO05D004197 6.6e-06 55.8 168 29.2
Actinidia08079 Actinidia chinensis HOM05D003413 ORTHO05D004197 8.6e-06 55.5 168 29.8
ClCG08G010150 Citrullus lanatus HOM05D003413 ORTHO05D004197 8.6e-06 55.5 168 29.2
MELO3C011449.2 Cucumis melo HOM05D003413 ORTHO05D004197 8.6e-06 55.5 168 29.2
MD10G1030600 Malus domestica HOM05D003413 ORTHO05D004197 8.6e-06 55.5 168 29.2
RcHm_v2.0_Chr4g0430701 Rosa chinensis HOM05D003413 ORTHO05D004197 8.6e-06 55.5 168 29.2


User provided reference genes

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