Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 0.0e+00 3260.3 1644 100.0
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 0.0e+00 2343.2 1665 74.7
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 0.0e+00 2299.2 1620 75.4
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 0.0e+00 2251.5 1618 73.6
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2196.0 1625 70.4
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 0.0e+00 2144.4 1632 68.6
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 0.0e+00 2119.4 1631 67.6
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2118.6 1629 67.8
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2114.0 1628 68.0
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 0.0e+00 2112.8 1643 67.6
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 0.0e+00 2109.3 1623 67.6
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2108.6 1624 68.5
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 0.0e+00 2100.9 1623 68.0
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 0.0e+00 2093.2 1608 68.1
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 0.0e+00 2092.4 1620 67.3
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2090.8 1623 67.6
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 0.0e+00 2088.2 1627 66.7
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2087.8 1634 67.3
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 0.0e+00 2071.6 1619 66.2
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2071.2 1624 66.6
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 0.0e+00 2067.4 1625 66.8
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 0.0e+00 2059.6 1625 65.3
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 0.0e+00 2043.9 1630 65.3
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2041.2 1629 65.6
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2037.7 1643 64.8
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 0.0e+00 2035.4 1625 65.6
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 0.0e+00 2030.8 1646 64.5
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2029.6 1646 64.7
Dinv18635 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2028.4 1524 69.9
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 0.0e+00 2019.2 1632 64.5
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 0.0e+00 2018.8 1648 64.4
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 2011.1 1619 65.2
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 0.0e+00 2008.8 1626 64.9
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 0.0e+00 2007.6 1601 67.8
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2005.3 1648 64.3
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2003.8 1609 65.7
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 2002.3 1623 65.1
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 0.0e+00 2001.1 1633 64.4
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 0.0e+00 1998.0 1645 64.2
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 1996.9 1619 64.9
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 0.0e+00 1995.7 1631 65.2
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 0.0e+00 1989.5 1647 63.8
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 1983.0 1626 64.5
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 0.0e+00 1981.1 1635 63.6
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 0.0e+00 1978.4 1668 62.6
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 1975.3 1626 64.0
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 0.0e+00 1974.5 1645 63.5
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 0.0e+00 1966.8 1623 63.2
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 1944.1 1637 63.8
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 1942.9 1630 62.9
QL03p034852 Quercus lobata HOM05D004417 ORTHO05D005528 0.0e+00 1940.6 1531 66.9
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 0.0e+00 1939.1 1623 63.0
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 1937.9 1630 62.5
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 0.0e+00 1931.8 1644 62.4
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 1920.6 1623 62.4
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 1917.9 1486 66.8
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 0.0e+00 1914.8 1661 61.6
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 0.0e+00 1912.5 1626 61.8
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 0.0e+00 1904.8 1628 61.2
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 0.0e+00 1902.5 1632 61.9
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 0.0e+00 1902.5 1625 62.4
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 0.0e+00 1900.9 1645 61.6
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 0.0e+00 1900.9 1931 55.2
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 1897.5 1619 61.0
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 0.0e+00 1885.5 1638 61.0
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 1875.9 1622 61.3
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 0.0e+00 1873.6 1633 61.4
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 0.0e+00 1851.6 1627 60.6
Sc14g0006960 Simmondsia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 1845.9 1526 63.7
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 0.0e+00 1845.5 1669 60.3
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 1842.4 1624 60.7
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 1838.9 1609 61.0
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 1836.6 1606 61.0
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 1828.9 1629 60.1
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 1827.4 1628 59.9
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 1827.0 1626 60.0
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 1825.8 1464 64.1
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 1824.7 1634 59.7
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 1823.5 1624 60.0
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 1822.8 1632 59.7
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 1815.8 1624 59.7
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 0.0e+00 1783.8 1625 58.6
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 0.0e+00 1762.7 1626 58.5
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 0.0e+00 1746.5 1977 50.5
COL.COLO4_13080 Corchorus olitorius HOM05D004417 ORTHO05D005528 0.0e+00 1739.2 1437 65.0
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 0.0e+00 1731.8 1620 57.8
Hund24934 Selenicereus undatus HOM05D004417 ORTHO05D005528 0.0e+00 1704.9 1480 62.0
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 0.0e+00 1702.6 1623 57.1
CiPaw.05G190700 Carya illinoinensis HOM05D004417 ORTHO05D005528 0.0e+00 1662.1 1414 63.4
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 1657.5 1628 55.7
HanXRQChr17g0566691 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 1646.3 1613 56.2
Lsat_1_v5_gn_4_12821 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 1643.6 1599 55.8
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 0.0e+00 1586.2 1246 66.0
DCAR_007321 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1504.2 1543 55.3
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 0.0e+00 1504.2 1277 63.5
Peaxi162Scf00376g00032 Petunia axillaris HOM05D004417 ORTHO05D005528 0.0e+00 1476.5 1428 58.8
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 1473.0 1152 66.7
Nitab4.5_0000018g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 0.0e+00 1364.4 1028 69.1
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 0.0e+00 1328.2 1375 55.9
Solyc05g016440.3 Solanum lycopersicum HOM05D004417 ORTHO05D005528 0.0e+00 1326.6 1019 68.1
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 0.0e+00 1203.3 1647 44.2
Pp3c27_2940 Physcomitrium patens HOM05D004417 ORTHO05D005528 0.0e+00 1149.8 1671 41.7
SEGI_05575 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 0.0e+00 1136.7 1227 50.5
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 0.0e+00 1128.2 1613 46.2
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 0.0e+00 1120.9 1625 41.8
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 2.2e-311 1073.2 1121 52.7
Gohir.A03G118100 Gossypium hirsutum HOM05D004417 ORTHO05D005528 7.8e-271 938.3 784 63.3
Gohir.A03G118200 Gossypium hirsutum HOM05D004417 ORTHO05D005528 5.6e-253 879.0 639 70.0
Solyc05g016460.2 Solanum lycopersicum HOM05D004417 ORTHO05D005528 7.9e-223 778.9 594 67.8
Cpa.g.sc2.220 Carica papaya HOM05D004417 ORTHO05D005528 5.7e-221 772.7 557 71.1
arahy.Tifrunner.gnm1.ann1.W0X7A3 Arachis hypogaea HOM05D004417 ORTHO05D005528 4.3e-213 746.5 640 61.9
Nitab4.5_0008542g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.4e-211 741.5 602 66.6
Nitab4.5_0000018g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 6.9e-211 739.2 591 67.0
Nitab4.5_0008542g0030 Nicotiana tabacum HOM05D004417 ORTHO05D005528 3.4e-202 710.3 496 73.6
VMungo1215G0458 Vigna mungo HOM05D004417 ORTHO05D005528 1.1e-192 678.7 581 62.3
SHI04465 Sapria himalayana HOM05D004417 ORTHO05D005528 2.7e-186 657.5 681 54.2
BcaB07g32312 Brassica carinata HOM05D004417 ORTHO05D005528 1.7e-177 628.2 572 59.1
vmacro00394 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 2.5e-160 571.2 413 71.4
SHI04470 Sapria himalayana HOM05D004417 ORTHO05D005528 4.7e-159 567.0 641 50.4
Rhsim09G0063700 Rhododendron simsii HOM05D004417 ORTHO05D005528 8.1e-151 539.7 469 62.7
arahy.Tifrunner.gnm1.ann1.LF64TX Arachis hypogaea HOM05D004417 ORTHO05D005528 5.4e-147 526.9 431 65.2
VMungo1215G3220 Vigna mungo HOM05D004417 ORTHO05D005528 2.1e-146 525.0 450 62.4
Haze_10919 Corylus avellana HOM05D004417 ORTHO05D005528 1.7e-145 521.9 377 72.9
Actinidia25661 Actinidia chinensis HOM05D004417 ORTHO05D005528 2.6e-133 481.5 592 50.0
Nitab4.5_0008542g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 6.6e-129 466.8 331 71.9
HPP92_024821 Vanilla planifolia HOM05D004417 ORTHO05D005528 1.0e-121 443.0 476 51.9
Haze_10916 Corylus avellana HOM05D004417 ORTHO05D005528 1.5e-117 429.1 364 64.6
CAN.G45.11 Capsicum annuum HOM05D004417 ORTHO05D005528 5.8e-117 427.2 318 68.6
Actinidia25662 Actinidia chinensis HOM05D004417 ORTHO05D005528 9.3e-115 419.9 292 72.9
VMungo1215G0989 Vigna mungo HOM05D004417 ORTHO05D005528 3.0e-113 414.8 338 63.3
VMungo1215G1550 Vigna mungo HOM05D004417 ORTHO05D005528 1.3e-111 409.5 252 77.0
Cpa.g.sc2.214 Carica papaya HOM05D004417 ORTHO05D005528 3.7e-111 407.9 322 68.3
SEGI_15839 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 3.9e-105 387.9 352 57.1
Nitab4.5_0005025g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 7.4e-104 383.6 331 61.6
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 9.3e-99 366.7 392 52.6
SEGI_38026 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 6.3e-87 327.4 452 44.5
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 1.9e-83 315.8 333 52.9
Peaxi162Scf00376g00324 Petunia axillaris HOM05D004417 ORTHO05D005528 7.7e-69 267.3 161 77.6
CiPaw.05G190600 Carya illinoinensis HOM05D004417 ORTHO05D005528 2.9e-68 265.4 158 78.5
Potri.010G108350 Populus trichocarpa HOM05D004417 ORTHO05D005528 5.4e-54 218.0 142 73.2
Psat2g053360 Pisum sativum HOM05D004417 ORTHO05D005528 7.8e-53 214.2 208 56.2
SHI04469 Sapria himalayana HOM05D004417 ORTHO05D005528 5.8e-48 198.0 146 66.4
Cpa.g.sc2.218 Carica papaya HOM05D004417 ORTHO05D005528 7.0e-46 191.0 122 77.9
Gorai.010G022100 Gossypium raimondii HOM05D004417 ORTHO05D003549 7.3e-43 181.0 129 71.3
SEGI_21450 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 8.0e-42 177.6 195 51.8
Haze_10915 Corylus avellana HOM05D004417 ORTHO05D005528 3.2e-38 165.6 98 76.5
Gohir.D10G083700 Gossypium hirsutum HOM05D003153 ORTHO05D003549 6.0e-37 161.4 158 55.7
Gohir.A02G156900 Gossypium hirsutum HOM05D003153 ORTHO05D003549 7.8e-37 161.0 158 55.7
Gohir.A03G114800 Gossypium hirsutum HOM05D003153 ORTHO05D003549 7.8e-37 161.0 158 55.7
Gohir.D01G098050 Gossypium hirsutum HOM05D003153 ORTHO05D003549 7.8e-37 161.0 158 55.7
Gohir.D10G134850 Gossypium hirsutum HOM05D003153 ORTHO05D003549 7.8e-37 161.0 158 55.7
Gohir.D13G141401 Gossypium hirsutum HOM05D003153 ORTHO05D003549 7.8e-37 161.0 158 55.7
Gohir.D10G083766 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.0e-36 160.6 158 55.1
QL03p034878 Quercus lobata HOM05D004417 ORTHO05D005528 8.6e-36 157.5 91 76.9
Gorai.011G113600 Gossypium raimondii HOM05D003153 ORTHO05D003549 1.5e-35 156.8 158 54.4
Hund24935 Selenicereus undatus HOM05D008000 ORTHO05D010275 1.5e-35 156.8 100 70.0
CAN.G45.12 Capsicum annuum HOM05D004417 ORTHO05D005528 1.2e-34 153.7 98 72.4
Nitab4.5_0008542g0040 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.8e-33 149.8 101 72.3
PSO083G0001 Papaver somniferum HOM05D004417 ORTHO05D005528 1.5e-32 146.7 91 74.7
Gohir.A13G139960 Gossypium hirsutum HOM05D003153 ORTHO05D003549 3.5e-29 135.6 145 52.4
Gohir.1Z049383 Gossypium hirsutum HOM05D003153 ORTHO05D003549 6.0e-29 134.8 145 52.4
Sopen03g014530 Solanum pennellii HOM05D004417 ORTHO05D005528 1.4e-25 123.6 91 64.8
Gorai.002G174000 Gossypium raimondii HOM05D004417 ORTHO05D000624 1.6e-21 110.2 91 59.3
Gohir.D01G141400 Gossypium hirsutum HOM05D004417 ORTHO05D000624 2.7e-21 109.4 91 58.2
HPP92_024820 Vanilla planifolia HOM05D004417 ORTHO05D005528 8.4e-15 87.8 78 64.1
HPP92_024819 Vanilla planifolia HOM05D004417 ORTHO05D005528 1.9e-14 86.7 82 57.3
Psat1g176600 Pisum sativum HOM05D002927 ORTHO05D015040 5.4e-14 85.1 55 70.9
Haze_10917 Corylus avellana HOM05D004417 ORTHO05D005528 1.6e-13 83.6 51 70.6
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 2.3e-12 79.7 56 64.3
TWI77G0048 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 3.3e-11 75.9 49 67.3
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 4.3e-11 75.5 54 64.8
Migut.L00545 Erythranthe guttata HOM05D004417 ORTHO05D005528 8.1e-10 71.2 51 64.7
Duzib084G1091 Durio zibethinus HOM05D004417 ORTHO05D005528 1.1e-09 70.9 129 35.7
Psat7g192520 Pisum sativum HOM05D002736 ORTHO05D018191 1.1e-06 60.8 139 36.0


User provided reference genes

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