Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 9.6e-206 719.9 362 100.0
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 3.4e-134 482.3 362 69.1
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 1.4e-132 476.9 362 69.3
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 1.5e-121 440.3 363 64.2
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 1.2e-120 437.2 362 62.7
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 1.6e-120 436.8 363 63.1
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 4.4e-118 428.7 363 62.3
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 2.7e-115 419.5 362 61.3
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.7e-114 416.8 362 60.5
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 2.2e-109 399.8 362 57.7
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 6.4e-109 398.3 362 57.5
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 6.0e-107 391.7 382 55.5
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 2.3e-106 389.8 362 57.2
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 3.0e-106 389.4 362 56.9
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 1.9e-105 386.7 362 56.9
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 7.3e-105 384.8 362 55.2
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 7.3e-105 384.8 362 55.5
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 1.2e-104 384.0 362 55.2
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.6e-104 383.6 362 55.2
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 2.1e-104 383.3 363 55.6
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 2.1e-104 383.3 363 55.1
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 2.8e-104 382.9 362 56.6
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 8.1e-104 381.3 376 56.1
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 1.4e-103 380.6 362 54.4
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.3e-103 379.8 363 55.1
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 3.1e-103 379.4 382 52.9
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 3.1e-103 379.4 362 55.0
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 5.2e-103 378.6 362 54.7
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 6.8e-103 378.3 345 56.5
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.2e-102 377.5 362 55.0
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 1.2e-102 377.5 362 55.0
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 1.5e-102 377.1 362 53.9
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 2.6e-102 376.3 362 56.1
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 2.6e-102 376.3 362 55.0
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 5.8e-102 375.2 362 56.1
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 7.6e-102 374.8 362 56.4
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.3e-101 374.0 362 57.5
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 1.7e-101 373.6 362 55.2
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 2.9e-101 372.9 419 48.7
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 4.9e-101 372.1 362 54.7
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 6.4e-101 371.7 362 55.5
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 6.4e-101 371.7 366 53.8
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 6.4e-101 371.7 362 57.2
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 8.4e-101 371.3 362 56.6
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 8.4e-101 371.3 362 56.1
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 8.4e-101 371.3 362 57.5
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 1.9e-100 370.2 362 54.1
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 1.9e-100 370.2 362 56.4
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 3.2e-100 369.4 362 53.9
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 9.2e-100 367.9 362 53.3
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 9.2e-100 367.9 362 53.0
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.2e-99 367.5 369 54.7
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.6e-99 367.1 362 53.0
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 1.7e-98 363.6 364 53.6
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 3.9e-98 362.5 362 56.6
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 6.6e-98 361.7 364 53.3
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 8.6e-98 361.3 362 52.5
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 3.3e-97 359.4 362 52.2
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 7.3e-97 358.2 362 53.3
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 1.6e-96 357.1 362 53.0
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 8.1e-96 354.8 402 48.5
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 1.8e-95 353.6 363 52.6
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 1.8e-95 353.6 362 52.8
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 3.1e-95 352.8 362 52.8
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 4.0e-95 352.4 362 51.9
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 9.0e-95 351.3 362 52.8
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 1.5e-94 350.5 362 52.8
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 1.5e-94 350.5 362 52.5
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 3.4e-94 349.4 362 52.2
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 7.6e-94 348.2 362 52.5
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 9.9e-94 347.8 362 52.5
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 2.2e-93 346.7 362 52.5
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 3.8e-93 345.9 363 50.4
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 8.4e-93 344.7 363 51.8
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 1.9e-92 343.6 363 52.3
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 2.4e-92 343.2 362 52.8
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 2.4e-92 343.2 363 50.4
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 3.2e-92 342.8 353 55.2
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 1.2e-91 340.9 345 54.8
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 1.6e-91 340.5 362 52.2
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 6.0e-91 338.6 363 52.1
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 6.0e-91 338.6 362 51.7
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 7.8e-91 338.2 362 51.1
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 1.7e-90 337.0 362 51.4
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 1.7e-90 337.0 342 52.3
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 2.3e-90 336.7 321 55.8
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 3.9e-90 335.9 372 51.3
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 6.6e-90 335.1 362 51.9
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 6.6e-90 335.1 364 51.9
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 1.1e-89 334.3 380 48.9
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 1.1e-89 334.3 362 50.6
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 5.6e-89 332.0 362 50.8
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 2.8e-88 329.7 363 50.1
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 8.1e-88 328.2 372 48.9
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 1.1e-87 327.8 362 50.3
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 1.1e-87 327.8 371 48.2
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 1.1e-87 327.8 362 50.3
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 9.0e-87 324.7 361 49.3
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 9.0e-87 324.7 362 51.4
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 1.3e-85 320.9 345 49.0
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 1.3e-85 320.9 403 47.1
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 3.8e-85 319.3 388 45.9
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 8.4e-85 318.2 363 48.5
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 7.1e-84 315.1 367 47.1
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 1.6e-83 313.9 398 45.7
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 3.9e-82 309.3 300 55.7
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 2.4e-79 300.1 362 46.1
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 2.4e-76 290.0 362 46.7
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 9.3e-76 288.1 323 50.8
Lj1A1034G49 Lonicera japonica HOM05D004457 ORTHO05D005282 3.0e-74 283.1 287 52.6
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 6.2e-72 275.4 402 42.8
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 4.0e-71 272.7 343 46.1
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 5.3e-71 272.3 362 43.6
Actinidia28413 Actinidia chinensis HOM05D004457 ORTHO05D005282 1.4e-68 264.2 271 50.2
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 3.9e-66 256.1 259 52.5
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 8.5e-61 238.4 345 41.4
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 1.1e-60 238.0 363 42.1
Cfa016062 Carpinus fangiana HOM05D004457 ORTHO05D005282 5.5e-60 235.7 332 44.9
Migut.F00937 Erythranthe guttata HOM05D004457 ORTHO05D005282 7.2e-60 235.3 154 77.9
Sed0022448 Sechium edule HOM05D004457 ORTHO05D005282 3.6e-59 233.0 247 51.8
PSO675G5198 Papaver somniferum HOM05D004457 ORTHO05D005282 6.7e-58 228.8 300 46.7
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.1e-57 228.0 355 40.3
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 5.7e-57 225.7 308 43.5
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 1.8e-55 220.7 362 37.3
CDE02G1044 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 2.0e-54 217.2 284 43.0
CARHR056470 Cardamine hirsuta HOM05D004457 ORTHO05D005282 4.5e-54 216.1 253 48.6
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 1.4e-52 211.1 362 38.7
FAN03G1923 Fragaria x ananassa HOM05D004457 ORTHO05D005282 3.2e-52 209.9 169 63.3
Dinv29138 Davidia involucrata HOM05D004457 ORTHO05D005282 4.1e-47 193.0 145 68.3
ECA233G5338 Erigeron canadensis HOM05D004457 ORTHO05D005282 1.2e-43 181.4 202 50.5
ClCG09G013130 Citrullus lanatus HOM05D004457 ORTHO05D005282 1.6e-43 181.0 169 56.8
Sopen03g027920 Solanum pennellii HOM05D004457 ORTHO05D005282 4.7e-43 179.5 144 66.7
Nitab4.5_0000338g0060 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.4e-42 177.9 171 58.5
Gohir.A08G097750 Gossypium hirsutum HOM05D004457 ORTHO05D005282 7.4e-41 172.2 279 38.4
ClCG09G013110 Citrullus lanatus HOM05D004457 ORTHO05D005282 2.8e-40 170.2 153 54.9
BolC4t27312H Brassica oleracea HOM05D004457 ORTHO05D005282 2.4e-39 167.2 154 55.8
Dinv29137 Davidia involucrata HOM05D004457 ORTHO05D005282 6.1e-35 152.5 129 58.1
Mapoly0043s0014 Marchantia polymorpha HOM05D004457 ORTHO05D005282 4.4e-33 146.4 386 31.1
AagrBONN_evm.TU.Sc2ySwM_228.2639 Anthoceros agrestis HOM05D004457 ORTHO05D005282 1.8e-31 141.0 246 32.5
BcaC02g08145 Brassica carinata HOM05D004457 ORTHO05D005282 5.0e-29 132.9 117 57.3
Pp3c11_5580 Physcomitrium patens HOM05D004457 ORTHO05D005282 8.5e-29 132.1 329 31.0
Sopen03g027940 Solanum pennellii HOM05D004457 ORTHO05D005282 1.5e-28 131.3 121 56.2
SMO364G0318 Selaginella moellendorffii HOM05D004457 ORTHO05D005282 2.1e-27 127.5 250 29.6
Pp3c10_23490 Physcomitrium patens HOM05D004457 ORTHO05D005282 5.4e-23 112.8 355 27.3
ECA233G2641 Erigeron canadensis HOM05D004457 ORTHO05D005282 1.0e-21 108.6 121 50.4
RcHm_v2.0_Chr7g0241921 Rosa chinensis HOM05D004457 ORTHO05D005282 4.2e-20 103.2 97 54.6
DCAR_020421 Daucus carota HOM05D004457 ORTHO05D005282 1.2e-19 101.7 82 56.1
Medtr3g091660 Medicago truncatula HOM05D004457 ORTHO05D005282 2.3e-18 97.4 97 48.5
MELO3C003309.2 Cucumis melo HOM05D004457 ORTHO05D005282 1.4e-15 88.2 87 59.8
C07p33100 Brassica napus HOM05D004457 ORTHO05D005282 9.2e-15 85.5 77 57.1
Nitab4.5_0000845g0010 Nicotiana tabacum HOM05D004457 ORTHO05D005282 9.2e-15 85.5 118 42.4
BcaC06g34068 Brassica carinata HOM05D004457 ORTHO05D005282 2.0e-14 84.3 77 57.1
BolC9t54837H Brassica oleracea HOM05D004457 ORTHO05D005282 2.0e-14 84.3 77 57.1
CDE02G4136 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 1.5e-12 78.2 79 48.1
Gohir.A08G102425 Gossypium hirsutum HOM05D004457 ORTHO05D005282 4.7e-11 73.2 63 54.0
QL09p022513 Quercus lobata HOM05D004457 ORTHO05D005282 4.7e-11 73.2 73 52.1
arahy.Tifrunner.gnm1.ann1.383HND Arachis hypogaea HOM05D004457 ORTHO05D005282 1.0e-10 72.0 62 64.5
Medtr3g091670 Medicago truncatula HOM05D004457 ORTHO05D005282 3.7e-08 63.5 62 58.1
QL03p072618 Quercus lobata HOM05D000132 ORTHO05D000058 3.5e-06 57.0 65 50.8
arahy.Tifrunner.gnm1.ann1.G80LMI Arachis hypogaea HOM05D004457 ORTHO05D082520 4.6e-06 56.6 37 64.9


User provided reference genes

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