Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold50G18424 Striga asiatica HOM05D017394 ORTHO05D001737 1.9e-51 205.7 113 100.0
SGA_v2.0_scaffold143G35747 Striga asiatica HOM05D017394 ORTHO05D001737 8.0e-34 147.1 112 73.2
SGA_v2.0_scaffold142G35665 Striga asiatica HOM05D017394 ORTHO05D001737 1.8e-30 136.0 112 71.4
SGA_v2.0_scaffold37G14762 Striga asiatica HOM05D017394 ORTHO05D001737 1.8e-30 136.0 112 72.3
SGA_v2.0_scaffold113G31714 Striga asiatica HOM05D017394 ORTHO05D001737 7.0e-30 134.0 112 71.4
SGA_v2.0_scaffold332G48948 Striga asiatica HOM05D017394 ORTHO05D001737 7.0e-30 134.0 97 82.5
SGA_v2.0_scaffold191G40486 Striga asiatica HOM05D017394 ORTHO05D001737 3.4e-24 115.2 97 70.1
MSTRG.4940 Avicennia marina HOM05D001878 ORTHO05D001737 1.4e-14 83.2 75 61.3
unitig_0.g2758 Utricularia gibba HOM05D001878 ORTHO05D001737 4.1e-14 81.6 104 51.9
Oeu037430.1 Olea europaea HOM05D001878 ORTHO05D001737 3.5e-13 78.6 75 62.7
Oeu019262.1 Olea europaea HOM05D001878 ORTHO05D001737 6.0e-13 77.8 75 62.7
unitig_748.g7119 Utricularia gibba HOM05D001878 ORTHO05D001737 1.1e-11 73.6 75 61.3
SGA_v2.0_scaffold288G47234 Striga asiatica HOM05D017394 ORTHO05D001737 9.5e-11 70.5 43 86.0
Cc02_g25370 Coffea canephora HOM05D001878 ORTHO05D001737 1.2e-10 70.1 68 55.9
Oeu026349.1 Olea europaea HOM05D001878 ORTHO05D001737 2.1e-10 69.3 74 56.8
SalBow5G0976 Salvia bowleyana HOM05D007698 ORTHO05D009663 8.1e-10 67.4 79 51.9
SalBow5G4762 Salvia bowleyana HOM05D007698 ORTHO05D009663 8.1e-10 67.4 79 51.9
Lsat_1_v5_gn_4_40001 Lactuca sativa HOM05D001878 ORTHO05D001737 1.4e-09 66.6 68 52.9
COL.COLO4_18392 Corchorus olitorius HOM05D001878 ORTHO05D001737 1.8e-09 66.2 55 61.8
Glyma.18G248000 Glycine max HOM05D001878 ORTHO05D001737 2.3e-09 65.9 66 54.5
Gohir.A08G139800 Gossypium hirsutum HOM05D001878 ORTHO05D001737 2.3e-09 65.9 74 50.0
Gohir.D08G160800 Gossypium hirsutum HOM05D001878 ORTHO05D001737 2.3e-09 65.9 74 50.0
Gorai.004G167100 Gossypium raimondii HOM05D001878 ORTHO05D001737 2.3e-09 65.9 74 50.0
Sabra14G0036200 Salix brachista HOM05D001878 ORTHO05D001737 3.1e-09 65.5 75 53.3
Sabra14G0038300 Salix brachista HOM05D001878 ORTHO05D001737 3.1e-09 65.5 75 53.3
CAN.G756.42 Capsicum annuum HOM05D001878 ORTHO05D001737 4.0e-09 65.1 60 55.0
Potri.014G051200 Populus trichocarpa HOM05D001878 ORTHO05D001737 4.0e-09 65.1 72 51.4
VMungo1383G0933 Vigna mungo HOM05D001878 ORTHO05D001737 4.0e-09 65.1 66 54.5
Nitab4.5_0011684g0010 Nicotiana tabacum HOM05D001878 ORTHO05D001737 5.2e-09 64.7 50 64.0
Phvul.008G049300 Phaseolus vulgaris HOM05D001878 ORTHO05D001737 5.2e-09 64.7 66 53.0
Nitab4.5_0000563g0150 Nicotiana tabacum HOM05D001878 ORTHO05D001737 8.9e-09 63.9 68 52.9
Potri.002G139500 Populus trichocarpa HOM05D001878 ORTHO05D001737 8.9e-09 63.9 76 48.7
Aa31LG1G26270 Aethionema arabicum HOM05D001878 ORTHO05D001737 2.0e-08 62.8 73 50.7
Rhsim01G0141600 Rhododendron simsii HOM05D001878 ORTHO05D001737 2.0e-08 62.8 96 41.7
PGSC0003DMG400001696 Solanum tuberosum HOM05D001878 ORTHO05D001737 2.0e-08 62.8 72 51.4
TWI14G1354 Tripterygium wilfordii HOM05D001878 ORTHO05D001737 2.0e-08 62.8 74 50.0
Glyma.09G245300 Glycine max HOM05D001878 ORTHO05D001737 3.4e-08 62.0 66 51.5
Sopen01g035660 Solanum pennellii HOM05D001878 ORTHO05D001737 4.4e-08 61.6 65 52.3
TWI59G0138 Tripterygium wilfordii HOM05D001878 ORTHO05D001737 4.4e-08 61.6 77 49.4
Lalb_Chr13g0290701 Lupinus albus HOM05D001878 ORTHO05D001737 5.8e-08 61.2 55 54.5
Migut.N01727 Erythranthe guttata HOM05D001878 ORTHO05D001737 7.5e-08 60.8 30 83.3
Lsat_1_v5_gn_1_84200 Lactuca sativa HOM05D001878 ORTHO05D001737 7.5e-08 60.8 68 51.5
Peaxi162Scf00853g00433 Petunia axillaris HOM05D001878 ORTHO05D001737 7.5e-08 60.8 55 56.4
Sp4g26780 Schrenkiella parvula HOM05D001878 ORTHO05D001737 7.5e-08 60.8 48 60.4
Solyc01g088820.2 Solanum lycopersicum HOM05D001878 ORTHO05D001737 7.5e-08 60.8 50 60.0
Ca_08044_v3 Cicer arietinum L. HOM05D001878 ORTHO05D001737 9.9e-08 60.5 68 44.1
BcaC02g12281 Brassica carinata HOM05D001878 ORTHO05D001737 1.3e-07 60.1 73 49.3
C04p05690 Brassica napus HOM05D001878 ORTHO05D001737 1.3e-07 60.1 73 49.3
Carub.0004s2728 Capsella rubella HOM05D001878 ORTHO05D001737 1.7e-07 59.7 72 52.8
Glyma.07G254502 Glycine max HOM05D001878 ORTHO05D001737 1.7e-07 59.7 67 52.2
Lj1g0024989 Lotus japonicus HOM05D001878 ORTHO05D001737 2.2e-07 59.3 67 49.3
Psat4g031080 Pisum sativum HOM05D001878 ORTHO05D001737 2.2e-07 59.3 70 51.4
CSS0031983 Camellia sinensis var. sinensis HOM05D001878 ORTHO05D001737 2.9e-07 58.9 39 69.2
CARHR139940 Cardamine hirsuta HOM05D001878 ORTHO05D001737 2.9e-07 58.9 71 52.1
CiPaw.14G018500 Carya illinoinensis HOM05D001878 ORTHO05D001737 2.9e-07 58.9 63 52.4
AT2G44730 Arabidopsis thaliana HOM05D001878 ORTHO05D001737 3.7e-07 58.5 69 49.3
Atru.chr5.102 Acer truncatum HOM05D001878 ORTHO05D001737 4.9e-07 58.2 62 53.2
Medtr7g081190 Medicago truncatula HOM05D001878 ORTHO05D001737 4.9e-07 58.2 75 48.0
Cpa.g.sc41.83 Carica papaya HOM05D001878 ORTHO05D001737 6.4e-07 57.8 51 58.8
CiPaw.13G024400 Carya illinoinensis HOM05D001878 ORTHO05D001737 6.4e-07 57.8 56 57.1
Thhalv10001488m.g Eutrema salsugineum HOM05D001878 ORTHO05D001737 6.4e-07 57.8 48 58.3
Lj4g0024312 Lotus japonicus HOM05D001878 ORTHO05D001737 6.4e-07 57.8 70 47.1
Psat3g099720 Pisum sativum HOM05D001878 ORTHO05D001737 6.4e-07 57.8 70 50.0
Phvul.003G097500 Phaseolus vulgaris HOM05D001878 ORTHO05D001737 1.1e-06 57.0 40 67.5
QL04p028592 Quercus lobata HOM05D001878 ORTHO05D001737 1.1e-06 57.0 42 64.3
QL04p028713 Quercus lobata HOM05D001878 ORTHO05D001737 1.1e-06 57.0 42 64.3
ECA248G2444 Erigeron canadensis HOM05D001878 ORTHO05D001737 1.4e-06 56.6 40 65.0
Glyma.08G051800 Glycine max HOM05D001878 ORTHO05D001737 1.4e-06 56.6 41 65.9
BcaB02g08851 Brassica carinata HOM05D001878 ORTHO05D001737 1.9e-06 56.2 71 47.9
BcaC02g12279 Brassica carinata HOM05D001878 ORTHO05D001737 1.9e-06 56.2 71 47.9
Lsat_1_v5_gn_1_84280 Lactuca sativa HOM05D001878 ORTHO05D001737 1.9e-06 56.2 68 50.0
VMungo1215G1720 Vigna mungo HOM05D001878 ORTHO05D001737 1.9e-06 56.2 66 48.5
BolC4t22199H Brassica oleracea HOM05D001878 ORTHO05D001737 2.4e-06 55.8 70 47.1
Dinv44041 Davidia involucrata HOM05D001878 ORTHO05D001737 2.4e-06 55.8 30 76.7
MD07G1097300 Malus domestica HOM05D001878 ORTHO05D001737 2.4e-06 55.8 86 43.0
PGR042G1541 Punica granatum HOM05D001878 ORTHO05D001737 2.4e-06 55.8 75 48.0
EL10Ac9g21782 Beta vulgaris HOM05D001878 ORTHO05D001737 3.2e-06 55.5 30 73.3
BcaC01g05198 Brassica carinata HOM05D001878 ORTHO05D001737 3.2e-06 55.5 48 58.3
C03p29660 Brassica napus HOM05D001878 ORTHO05D001737 3.2e-06 55.5 48 58.3
BolC3t15314H Brassica oleracea HOM05D001878 ORTHO05D001737 3.2e-06 55.5 48 58.3
Ca_21569_v3 Cicer arietinum L. HOM05D001878 ORTHO05D001737 3.2e-06 55.5 40 65.0
CANSAT25G3641 Cannabis sativa HOM05D001878 ORTHO05D001737 4.1e-06 55.1 39 66.7
Cfa011046 Carpinus fangiana HOM05D001878 ORTHO05D001737 4.1e-06 55.1 41 63.4
Haze_02877 Corylus avellana HOM05D001878 ORTHO05D001737 4.1e-06 55.1 41 63.4
Duzib133G0474 Durio zibethinus HOM05D001878 ORTHO05D001737 4.1e-06 55.1 38 68.4
FAN01G1421 Fragaria x ananassa HOM05D001878 ORTHO05D001737 4.1e-06 55.1 78 43.6
SalBow7G3666 Salvia bowleyana HOM05D001878 ORTHO05D001737 4.1e-06 55.1 30 73.3
Thecc.01G400100 Theobroma cacao HOM05D001878 ORTHO05D001737 4.1e-06 55.1 38 68.4
BraA03t11694Z Brassica rapa HOM05D001878 ORTHO05D001737 5.4e-06 54.7 67 49.3
AUR62016671 Chenopodium quinoa HOM05D001878 ORTHO05D001737 5.4e-06 54.7 70 42.9
Ciclev10020863m.g Citrus clementina HOM05D001878 ORTHO05D001737 5.4e-06 54.7 38 68.4
FAN10G3306 Fragaria x ananassa HOM05D001878 ORTHO05D001737 5.4e-06 54.7 77 41.6
Ah.01g019780 Amaranthus hybridus HOM05D001878 ORTHO05D001737 7.1e-06 54.3 40 62.5
AL4G43780 Arabidopsis lyrata HOM05D001878 ORTHO05D001737 7.1e-06 54.3 69 46.4
BcaB04g18388 Brassica carinata HOM05D001878 ORTHO05D001737 7.1e-06 54.3 48 60.4
A03p24870 Brassica napus HOM05D001878 ORTHO05D001737 7.1e-06 54.3 67 49.3
A05p04860 Brassica napus HOM05D001878 ORTHO05D001737 7.1e-06 54.3 70 45.7
BraA05t19461Z Brassica rapa HOM05D001878 ORTHO05D001737 7.1e-06 54.3 70 45.7
DCAR_029489 Daucus carota HOM05D001878 ORTHO05D001737 7.1e-06 54.3 76 44.7
HanXRQChr01g0017711 Helianthus annuus HOM05D001878 ORTHO05D001737 7.1e-06 54.3 45 60.0
Manes.05G056800 Manihot esculenta HOM05D001878 ORTHO05D001737 7.1e-06 54.3 70 45.7
TPR.G28130 Trifolium pratense HOM05D001878 ORTHO05D001737 7.1e-06 54.3 30 73.3
BcaC01g05201 Brassica carinata HOM05D001878 ORTHO05D001737 9.2e-06 53.9 71 46.5
FAN06G1067 Fragaria x ananassa HOM05D001878 ORTHO05D001737 9.2e-06 53.9 30 73.3
RcHm_v2.0_Chr1g0345291 Rosa chinensis HOM05D001878 ORTHO05D001737 9.2e-06 53.9 30 73.3
TAR629G0579 Trochodendron aralioides HOM05D001878 ORTHO05D001737 9.2e-06 53.9 71 45.1


User provided reference genes

Program Settings