Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold507G52551 Striga asiatica HOM05D002660 ORTHO05D003902 2.1e-52 208.8 105 100.0
Sed0026029 Sechium edule HOM05D003467 ORTHO05D004220 2.2e-14 82.4 52 71.2
Cpa.g.sc263.8 Carica papaya HOM05D002660 ORTHO05D003902 3.8e-14 81.6 56 60.7
CAN.G950.7 Capsicum annuum HOM05D002660 ORTHO05D003902 5.5e-13 77.8 51 66.7
Ca_22176_v3 Cicer arietinum L. HOM05D001560 ORTHO05D003613 5.5e-13 77.8 63 57.1
SGA_v2.0_scaffold255G45438 Striga asiatica HOM05D002660 ORTHO05D003902 2.1e-12 75.9 66 56.1
Sed0005295 Sechium edule HOM05D002660 ORTHO05D003902 4.7e-12 74.7 52 61.5
Solyc00g500181.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.3e-11 72.4 65 55.4
Solyc00g500227.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.3e-11 72.4 65 55.4
Solyc00g500263.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.3e-11 72.4 65 55.4
Solyc00g500350.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.3e-11 72.4 65 55.4
Solyc11g063530.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.3e-11 72.4 65 55.4
Sopen00g006790 Solanum pennellii HOM05D002660 ORTHO05D003902 2.3e-11 72.4 65 55.4
PGSC0003DMG400033607 Solanum tuberosum HOM05D002660 ORTHO05D003902 2.3e-11 72.4 65 55.4
arahy.Tifrunner.gnm1.ann1.4WR8AK Arachis hypogaea HOM05D002660 ORTHO05D003902 3.0e-11 72.0 72 51.4
arahy.Tifrunner.gnm1.ann1.64IP8W Arachis hypogaea HOM05D002660 ORTHO05D003902 3.0e-11 72.0 72 51.4
arahy.Tifrunner.gnm1.ann1.DD5JWP Arachis hypogaea HOM05D002660 ORTHO05D003902 3.0e-11 72.0 72 51.4
arahy.Tifrunner.gnm1.ann1.MHP2RT Arachis hypogaea HOM05D002660 ORTHO05D003902 3.0e-11 72.0 72 51.4
arahy.Tifrunner.gnm1.ann1.RJKU2P Arachis hypogaea HOM05D002660 ORTHO05D003902 3.0e-11 72.0 72 51.4
COL.COLO4_02507 Corchorus olitorius HOM05D002660 ORTHO05D003902 3.0e-11 72.0 48 64.6
SGA_v2.0_scaffold420G51340 Striga asiatica HOM05D002660 ORTHO05D003902 5.2e-11 71.2 48 64.6
arahy.Tifrunner.gnm1.ann1.8U7R2G Arachis hypogaea HOM05D002660 ORTHO05D003902 1.5e-10 69.7 52 53.8
ATR0575G001 Amborella trichopoda HOM05D002660 ORTHO05D003902 3.4e-10 68.6 52 57.7
Sopen05g012700 Solanum pennellii HOM05D002660 ORTHO05D000001 3.4e-10 68.6 56 53.6
SGA_v2.0_scaffold420G51422 Striga asiatica HOM05D002660 ORTHO05D019448 3.4e-10 68.6 56 57.1
SGA_v2.0_scaffold400G50856 Striga asiatica HOM05D002660 ORTHO05D003902 4.4e-10 68.2 55 58.2
RcHm_v2.0_MTg0498601 Rosa chinensis HOM05D002660 ORTHO05D003902 5.7e-10 67.8 56 53.6
CAN.G248.9 Capsicum annuum HOM05D002660 ORTHO05D003902 7.5e-10 67.4 60 53.3
unitig_87.g28008 Utricularia gibba HOM05D002660 ORTHO05D003902 7.5e-10 67.4 49 57.1
arahy.Tifrunner.gnm1.ann1.HMG3T6 Arachis hypogaea HOM05D002660 ORTHO05D003902 9.8e-10 67.0 52 51.9
arahy.Tifrunner.gnm1.ann1.ET7F5Q Arachis hypogaea HOM05D002660 ORTHO05D003902 1.3e-09 66.6 52 51.9
arahy.Tifrunner.gnm1.ann1.1F9GAV Arachis hypogaea HOM05D002660 ORTHO05D003902 1.7e-09 66.2 72 48.6
Lj2P1228T81 Lonicera japonica HOM05D011380 ORTHO05D019448 2.2e-09 65.9 56 50.0
Gohir.A06G098104 Gossypium hirsutum HOM05D002660 ORTHO05D003902 2.8e-09 65.5 64 57.8
arahy.Tifrunner.gnm1.ann1.PGW3V5 Arachis hypogaea HOM05D002660 ORTHO05D003902 3.7e-09 65.1 59 54.2
arahy.Tifrunner.gnm1.ann1.UMNW15 Arachis hypogaea HOM05D002660 ORTHO05D003902 3.7e-09 65.1 59 54.2
CAN.G85.19 Capsicum annuum HOM05D002660 ORTHO05D003902 3.7e-09 65.1 50 58.0
Sed0016072 Sechium edule HOM05D002660 ORTHO05D003902 3.7e-09 65.1 40 72.5
BcaC05g26896 Brassica carinata HOM05D002660 ORTHO05D003902 1.1e-08 63.5 55 56.4
BcaC08g43707 Brassica carinata HOM05D002660 ORTHO05D003902 1.1e-08 63.5 55 56.4
BNapus_Darmor_BZH_scaffold_234p00270 Brassica napus HOM05D002660 ORTHO05D003902 1.1e-08 63.5 55 56.4
BolSC28t60340H Brassica oleracea HOM05D002660 ORTHO05D003902 1.1e-08 63.5 55 56.4
BraSC177t45771Z Brassica rapa HOM05D002660 ORTHO05D003902 1.1e-08 63.5 55 56.4
BraSC48t46265Z Brassica rapa HOM05D002660 ORTHO05D003902 1.1e-08 63.5 55 56.4
Lj2A1234T113 Lonicera japonica HOM05D002660 ORTHO05D003902 1.8e-08 62.8 48 60.4
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 3.1e-08 62.0 48 56.2
arahy.Tifrunner.gnm1.ann1.NU84BI Arachis hypogaea HOM05D000388 ORTHO05D000473 3.1e-08 62.0 48 56.2
BolC6t36210H Brassica oleracea HOM05D002660 ORTHO05D003902 3.1e-08 62.0 55 56.4
arahy.Tifrunner.gnm1.ann1.BS65NI Arachis hypogaea HOM05D002660 ORTHO05D003902 5.4e-08 61.2 47 48.9
arahy.Tifrunner.gnm1.ann1.P7KX5B Arachis hypogaea HOM05D002660 ORTHO05D003902 5.4e-08 61.2 47 48.9
arahy.Tifrunner.gnm1.ann1.QMNG84 Arachis hypogaea HOM05D002660 ORTHO05D003902 5.4e-08 61.2 47 48.9
SabraMtG0005500 Salix brachista HOM05D002660 ORTHO05D003902 1.6e-07 59.7 45 53.3
Ca_26686_v3 Cicer arietinum L. HOM05D011358 ORTHO05D014184 2.0e-07 59.3 28 100.0
arahy.Tifrunner.gnm1.ann1.FFDS4S Arachis hypogaea HOM05D002660 ORTHO05D003902 2.7e-07 58.9 59 49.2
ATR0661G179 Amborella trichopoda HOM05D002660 ORTHO05D003902 4.5e-07 58.2 50 52.0
arahy.Tifrunner.gnm1.ann1.2INJ5A Arachis hypogaea HOM05D002660 ORTHO05D003902 4.5e-07 58.2 59 47.5
MBI05_g23322_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009798 1.0e-06 57.0 54 48.1
Aa31csc1168G10 Aethionema arabicum HOM05D002660 ORTHO05D003902 1.3e-06 56.6 52 50.0
MBI14_g44092_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 1.7e-06 56.2 56 44.6


User provided reference genes

Program Settings