Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold500G52494 Striga asiatica HOM05D003969 ORTHO05D003125 1.1e-60 236.5 126 100.0
SalBow1G8303 Salvia bowleyana HOM05D003969 ORTHO05D003125 6.0e-38 161.0 132 62.1
Migut.K00379 Erythranthe guttata HOM05D003969 ORTHO05D003125 2.3e-34 149.1 127 68.5
MSTRG.10635 Avicennia marina HOM05D003969 ORTHO05D003125 4.1e-31 138.3 120 62.5
MSTRG.10639 Avicennia marina HOM05D003969 ORTHO05D003125 1.7e-29 132.9 111 60.4
Peaxi162Scf00391g00017 Petunia axillaris HOM05D003969 ORTHO05D003125 2.4e-23 112.5 133 53.4
Cc06_g07430 Coffea canephora HOM05D003969 ORTHO05D003125 9.3e-23 110.5 132 45.5
Sopen12g005450 Solanum pennellii HOM05D003969 ORTHO05D003125 8.7e-21 104.0 128 51.6
PGSC0003DMG400036991 Solanum tuberosum HOM05D003969 ORTHO05D003125 9.6e-20 100.5 131 51.1
Solyc12g010430.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 8.1e-19 97.4 128 48.4
Sopen07g003200 Solanum pennellii HOM05D003969 ORTHO05D003125 1.4e-18 96.7 138 42.8
Solyc07g007150.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 5.3e-18 94.7 137 43.1
CAN.G551.21 Capsicum annuum HOM05D003969 ORTHO05D003125 2.0e-17 92.8 127 53.5
PGSC0003DMG400030696 Solanum tuberosum HOM05D003969 ORTHO05D003125 2.6e-17 92.4 144 41.0
TAR625G0404 Trochodendron aralioides HOM05D003969 ORTHO05D003125 5.8e-17 91.3 132 44.7
TAR636G2249 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.7e-16 89.7 133 43.6
Dinv41425 Davidia involucrata HOM05D003969 ORTHO05D003125 1.4e-15 86.7 117 43.6
Psat4g033280 Pisum sativum HOM05D003969 ORTHO05D003125 1.4e-15 86.7 125 41.6
Nitab4.5_0017863g0010 Nicotiana tabacum HOM05D003969 ORTHO05D003125 9.3e-15 84.0 115 47.0
Hma1.2p1_0182F.1_g080470 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 6.0e-14 81.3 129 40.3
Hma1.2p1_2744F.1_g327795 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 6.0e-14 81.3 129 40.3
CSS0019227 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 7.9e-14 80.9 128 41.4
CSS0049905 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 7.9e-14 80.9 128 41.4
Glyma.13G157500 Glycine max HOM05D003969 ORTHO05D003125 1.7e-13 79.7 127 38.6
Nitab4.5_0001751g0090 Nicotiana tabacum HOM05D003969 ORTHO05D003125 3.0e-13 79.0 104 51.0
Rhsim03G0254600 Rhododendron simsii HOM05D000320 ORTHO05D000532 3.0e-13 79.0 120 40.8
Lsat_1_v5_gn_8_63081 Lactuca sativa HOM05D003969 ORTHO05D003125 5.1e-13 78.2 127 38.6
Hma1.2p1_1784F.1_g302146 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 8.7e-13 77.4 128 35.2
Hma1.2p1_1784F.1_g302150 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 8.7e-13 77.4 128 35.2
Phvul.003G174600 Phaseolus vulgaris HOM05D003969 ORTHO05D003125 1.9e-12 76.3 121 35.5
Ca_21615_v3 Cicer arietinum L. HOM05D003969 ORTHO05D003125 2.5e-12 75.9 125 39.2
Nn2g12243 Nelumbo nucifera HOM05D003969 ORTHO05D003125 2.5e-12 75.9 131 42.0
TAR626G0029 Trochodendron aralioides HOM05D003969 ORTHO05D003125 2.5e-12 75.9 134 41.0
Medtr4g116500 Medicago truncatula HOM05D003969 ORTHO05D003125 3.3e-12 75.5 130 36.2
VMungo1215G0564 Vigna mungo HOM05D003969 ORTHO05D003125 7.4e-12 74.3 121 35.5
Nn8g39714 Nelumbo nucifera HOM05D003969 ORTHO05D003125 9.6e-12 73.9 126 42.9
TAR383G0074 Trochodendron aralioides HOM05D003969 ORTHO05D003125 9.6e-12 73.9 122 41.8
Lalb_Chr12g0198511 Lupinus albus HOM05D003969 ORTHO05D003125 1.3e-11 73.6 124 39.5
Glyma.17G105200 Glycine max HOM05D003969 ORTHO05D003125 1.6e-11 73.2 123 36.6
PGSC0003DMG400029901 Solanum tuberosum HOM05D003969 ORTHO05D003125 4.8e-11 71.6 109 39.4
TPR.G15776 Trifolium pratense HOM05D003969 ORTHO05D003125 4.8e-11 71.6 131 34.4
Lj4g0023658 Lotus japonicus HOM05D003969 ORTHO05D003125 6.2e-11 71.2 127 39.4
ClCG02G017250 Citrullus lanatus HOM05D003969 ORTHO05D003125 8.1e-11 70.9 132 42.4
Oeu057292.1 Olea europaea HOM05D003969 ORTHO05D003125 1.1e-10 70.5 126 39.7
HPP92_005341 Vanilla planifolia HOM05D003969 ORTHO05D003125 1.1e-10 70.5 129 34.9
ECA236G4020 Erigeron canadensis HOM05D003969 ORTHO05D003125 1.4e-10 70.1 128 41.4
HanXRQChr05g0141561 Helianthus annuus HOM05D003969 ORTHO05D003125 1.8e-10 69.7 123 39.0
Hma1.2p1_0228F.1_g096590 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 2.4e-10 69.3 119 40.3
MBI14_g03633_MAGBIO Magnolia biondii HOM05D003969 ORTHO05D003125 2.4e-10 69.3 118 39.8
Actinidia21911 Actinidia chinensis HOM05D003969 ORTHO05D003125 3.1e-10 68.9 134 41.8
Peaxi162Scf00116g00085 Petunia axillaris HOM05D003969 ORTHO05D003125 3.1e-10 68.9 110 40.9
Ah.16g104800 Amaranthus hybridus HOM05D003969 ORTHO05D003125 5.3e-10 68.2 115 39.1
Peaxi162Scf01184g00133 Petunia axillaris HOM05D003969 ORTHO05D003125 5.3e-10 68.2 116 45.7
Actinidia04245 Actinidia chinensis HOM05D003969 ORTHO05D003125 6.9e-10 67.8 139 47.5
Cpa.g.sc46.86 Carica papaya HOM05D003969 ORTHO05D003125 6.9e-10 67.8 140 43.6
Nitab4.5_0000069g0040 Nicotiana tabacum HOM05D003969 ORTHO05D003125 6.9e-10 67.8 81 46.9
Solyc08g041810.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 6.9e-10 67.8 108 38.0
Rhsim02G0205800 Rhododendron simsii HOM05D003969 ORTHO05D003125 9.0e-10 67.4 112 42.0
PSO675G3576 Papaver somniferum HOM05D003969 ORTHO05D003125 1.2e-09 67.0 154 31.8
Dinv15887 Davidia involucrata HOM05D003969 ORTHO05D003125 1.5e-09 66.6 103 43.7
PSO732G0403 Papaver somniferum HOM05D003969 ORTHO05D003125 2.6e-09 65.9 154 31.2
FAN23G1308 Fragaria x ananassa HOM05D003969 ORTHO05D003125 4.5e-09 65.1 137 35.8
Oeu010893.1 Olea europaea HOM05D003969 ORTHO05D003125 4.5e-09 65.1 90 42.2
AUR62031569 Chenopodium quinoa HOM05D003969 ORTHO05D003125 5.8e-09 64.7 110 34.5
Potri.006G259200 Populus trichocarpa HOM05D008824 ORTHO05D003125 5.8e-09 64.7 124 36.3
Ah.10g035700 Amaranthus hybridus HOM05D003969 ORTHO05D003125 7.6e-09 64.3 115 37.4
EL10Ac2g04157 Beta vulgaris HOM05D003969 ORTHO05D003125 7.6e-09 64.3 122 36.1
Sopen08g011970 Solanum pennellii HOM05D003969 ORTHO05D003125 7.6e-09 64.3 108 38.0
Aqoxy7G03536 Aquilegia oxysepala HOM05D003969 ORTHO05D003125 9.9e-09 63.9 112 34.8
Gohir.A07G030200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 9.9e-09 63.9 59 50.8
Gohir.D07G034000 Gossypium hirsutum HOM05D003969 ORTHO05D003125 9.9e-09 63.9 59 50.8
Gorai.001G035600 Gossypium raimondii HOM05D003969 ORTHO05D003125 9.9e-09 63.9 59 50.8
Prupe.7G255000 Prunus persica HOM05D003969 ORTHO05D003125 9.9e-09 63.9 141 31.9
Migut.A00008 Erythranthe guttata HOM05D003969 ORTHO05D003125 1.3e-08 63.5 116 41.4
Sc23g0006550 Simmondsia chinensis HOM05D003969 ORTHO05D003125 1.3e-08 63.5 123 35.8
RcHm_v2.0_Chr2g0086701 Rosa chinensis HOM05D003969 ORTHO05D003125 1.7e-08 63.2 146 33.6
AUR62012444 Chenopodium quinoa HOM05D003969 ORTHO05D003125 2.2e-08 62.8 110 33.6
Aqoxy7G00610 Aquilegia oxysepala HOM05D003969 ORTHO05D003125 2.9e-08 62.4 119 34.5
ClCG05G016610 Citrullus lanatus HOM05D003969 ORTHO05D003125 2.9e-08 62.4 116 36.2
Thecc.09G019700 Theobroma cacao HOM05D003969 ORTHO05D003125 2.9e-08 62.4 121 34.7
PGSC0003DMG400005307 Solanum tuberosum HOM05D003969 ORTHO05D003125 3.8e-08 62.0 67 49.3
Sc23g0006560 Simmondsia chinensis HOM05D003969 ORTHO05D003125 4.9e-08 61.6 116 36.2
Sc23g0006570 Simmondsia chinensis HOM05D003969 ORTHO05D003125 4.9e-08 61.6 116 35.3
Aa31sc598G40 Aethionema arabicum HOM05D003969 ORTHO05D003125 6.4e-08 61.2 121 33.1
FAN26G0199 Fragaria x ananassa HOM05D003969 ORTHO05D003125 6.4e-08 61.2 142 33.8
Manes.16G125900 Manihot esculenta HOM05D008824 ORTHO05D003125 8.4e-08 60.8 59 42.4
Nitab4.5_0002992g0060 Nicotiana tabacum HOM05D003969 ORTHO05D003125 8.4e-08 60.8 71 46.5
TWI34G0986 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 1.1e-07 60.5 114 36.0
MSTRG.26029 Avicennia marina HOM05D003969 ORTHO05D003125 1.4e-07 60.1 64 50.0
FAN19G0689 Fragaria x ananassa HOM05D003969 ORTHO05D003125 1.4e-07 60.1 137 34.3
FAN28G0460 Fragaria x ananassa HOM05D003969 ORTHO05D003125 1.4e-07 60.1 137 34.3
Nitab4.5_0010572g0020 Nicotiana tabacum HOM05D003969 ORTHO05D003125 1.4e-07 60.1 70 48.6
Solyc01g011390.2 Solanum lycopersicum HOM05D003969 ORTHO05D003125 1.4e-07 60.1 63 49.2
AT5G35090 Arabidopsis thaliana HOM05D003969 ORTHO05D003125 1.9e-07 59.7 127 30.7
Dinv11721 Davidia involucrata HOM05D003969 ORTHO05D003125 2.4e-07 59.3 59 54.2
Sc08g0005750 Simmondsia chinensis HOM05D003969 ORTHO05D003125 2.4e-07 59.3 118 37.3
TWI34G1911 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 2.4e-07 59.3 132 37.1
CSS0007982 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 3.2e-07 58.9 122 35.2
AUR62041449 Chenopodium quinoa HOM05D003969 ORTHO05D003125 3.2e-07 58.9 134 29.1
COL.COLO4_18912 Corchorus olitorius HOM05D003969 ORTHO05D003125 3.2e-07 58.9 114 35.1
PGR031G2169 Punica granatum HOM05D003969 ORTHO05D003125 3.2e-07 58.9 118 36.4
HPP92_023807 Vanilla planifolia HOM05D003969 ORTHO05D003125 3.2e-07 58.9 122 31.1
ClCG08G013530 Citrullus lanatus HOM05D008824 ORTHO05D003125 4.2e-07 58.5 112 37.5
CANSAT11G0887 Cannabis sativa HOM05D003969 ORTHO05D003125 7.1e-07 57.8 129 32.6
Cc08_g00220 Coffea canephora HOM05D003969 ORTHO05D003125 9.3e-07 57.4 120 35.8
THA.LOC104815009 Tarenaya hassleriana HOM05D008824 ORTHO05D003125 9.3e-07 57.4 126 34.1
Atru.chr7.265 Acer truncatum HOM05D003969 ORTHO05D003125 1.2e-06 57.0 125 35.2
AL7G43940 Arabidopsis lyrata HOM05D003969 ORTHO05D003125 1.2e-06 57.0 128 31.2
Potri.003G070750 Populus trichocarpa HOM05D008824 ORTHO05D003125 1.2e-06 57.0 117 34.2
Carub.0007s3088 Capsella rubella HOM05D003969 ORTHO05D003125 2.1e-06 56.2 130 33.1
Cfa013102 Carpinus fangiana HOM05D003969 ORTHO05D003125 2.1e-06 56.2 111 36.9
Sabra18G0025300 Salix brachista HOM05D008824 ORTHO05D003125 2.1e-06 56.2 60 48.3
CiPaw.07G226900 Carya illinoinensis HOM05D003969 ORTHO05D003125 2.7e-06 55.8 115 33.9
CDE02G3523 Ceratophyllum demersum HOM05D000894 ORTHO05D001833 2.7e-06 55.8 110 36.4
Sopen01g007400 Solanum pennellii HOM05D003969 ORTHO05D003125 2.7e-06 55.8 58 50.0
CARHR217160 Cardamine hirsuta HOM05D003969 ORTHO05D003125 3.5e-06 55.5 67 43.3
AUR62011257 Chenopodium quinoa HOM05D003969 ORTHO05D003125 3.5e-06 55.5 62 43.5
CsaV3_4G036890 Cucumis sativus L. HOM05D003969 ORTHO05D003125 3.5e-06 55.5 120 31.7
Glyma.14G112500 Glycine max HOM05D003969 ORTHO05D003125 4.6e-06 55.1 53 49.1
Rhsim01G0050100 Rhododendron simsii HOM05D016725 ORTHO05D003125 4.6e-06 55.1 120 30.8
Sed0014973 Sechium edule HOM05D003969 ORTHO05D003125 4.6e-06 55.1 65 43.1
vmacro12402 Vaccinium macrocarpon HOM05D006851 ORTHO05D008844 4.6e-06 55.1 115 34.8
MELO3C016989.2 Cucumis melo HOM05D003969 ORTHO05D003125 6.0e-06 54.7 116 32.8
Glyma.17G215400 Glycine max HOM05D013068 ORTHO05D003125 6.0e-06 54.7 86 37.2
Gohir.A05G056900 Gossypium hirsutum HOM05D003969 ORTHO05D003125 6.0e-06 54.7 61 42.6
Gohir.D05G059000 Gossypium hirsutum HOM05D003969 ORTHO05D003125 6.0e-06 54.7 61 42.6
Os06g0646100 Oryza sativa ssp. japonica HOM05D021431 ORTHO05D003125 6.0e-06 54.7 122 35.2
Sabra06G0202600 Salix brachista HOM05D008824 ORTHO05D003125 6.0e-06 54.7 60 48.3
Peaxi162Scf00315g00011 Petunia axillaris HOM05D003969 ORTHO05D003125 7.9e-06 54.3 75 46.7
THA.LOC104808923 Tarenaya hassleriana HOM05D003969 ORTHO05D003125 7.9e-06 54.3 129 36.4
THA.LOC104814116 Tarenaya hassleriana HOM05D008824 ORTHO05D003125 7.9e-06 54.3 107 33.6


User provided reference genes

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