Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G02500 Striga asiatica HOM05D001997 ORTHO05D004620 1.1e-62 243.0 117 100.0
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 1.2e-35 153.3 75 100.0
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 7.8e-24 114.0 78 70.5
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 5.0e-23 111.3 77 74.0
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 5.0e-23 111.3 77 68.8
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 9.5e-22 107.1 70 70.0
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 9.5e-22 107.1 76 71.1
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 9.5e-22 107.1 73 65.8
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 1.2e-21 106.7 70 70.0
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 1.2e-21 106.7 72 76.4
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 1.6e-21 106.3 72 70.8
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 1.6e-21 106.3 71 69.0
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 2.8e-21 105.5 70 68.6
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 2.8e-21 105.5 76 69.7
SalBow3G4162 Salvia bowleyana HOM05D001997 ORTHO05D004620 2.8e-21 105.5 74 73.0
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 2.8e-21 105.5 76 72.4
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 3.6e-21 105.1 70 71.4
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 3.6e-21 105.1 70 71.4
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 4.7e-21 104.8 71 66.2
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 6.2e-21 104.4 78 69.2
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 6.2e-21 104.4 76 69.7
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 1.1e-20 103.6 72 68.1
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 1.8e-20 102.8 70 68.6
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 3.1e-20 102.1 70 65.7
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 4.0e-20 101.7 74 64.9
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 4.0e-20 101.7 76 69.7
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 6.8e-20 100.9 70 68.6
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 8.9e-20 100.5 70 68.6
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 1.2e-19 100.1 75 66.7
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 1.5e-19 99.8 72 65.3
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 1.5e-19 99.8 71 67.6
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 2.0e-19 99.4 71 63.4
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 3.4e-19 98.6 70 64.3
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 5.8e-19 97.8 70 68.6
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 5.8e-19 97.8 68 66.2
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 5.8e-19 97.8 71 63.4
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 5.8e-19 97.8 71 67.6
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 9.8e-19 97.1 70 67.1
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 9.8e-19 97.1 74 60.8
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 9.8e-19 97.1 72 65.3
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 9.8e-19 97.1 72 63.9
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.7e-18 96.3 70 65.7
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.7e-18 96.3 70 65.7
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 1.7e-18 96.3 70 65.7
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 2.2e-18 95.9 72 63.9
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 2.2e-18 95.9 71 62.0
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 3.7e-18 95.1 70 61.4
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 3.7e-18 95.1 74 60.8
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 3.7e-18 95.1 69 65.2
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 4.9e-18 94.7 72 59.7
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 8.3e-18 94.0 72 56.9
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 8.3e-18 94.0 68 63.2
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 1.1e-17 93.6 72 59.7
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 1.1e-17 93.6 72 61.1
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 1.1e-17 93.6 70 62.9
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 1.4e-17 93.2 72 59.7
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 1.4e-17 93.2 72 55.6
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 1.4e-17 93.2 70 60.0
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 1.4e-17 93.2 74 58.1
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 1.9e-17 92.8 68 60.3
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.4e-17 92.4 69 62.3
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 7.0e-17 90.9 72 58.3
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 7.0e-17 90.9 69 60.9
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 9.2e-17 90.5 69 60.9
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 1.2e-16 90.1 73 53.4
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 1.6e-16 89.7 74 55.4
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 1.6e-16 89.7 70 61.4
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.6e-16 89.7 70 61.4
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 1.6e-16 89.7 70 60.0
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.7e-16 89.0 70 60.0
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 3.5e-16 88.6 69 59.4
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.5e-16 88.6 69 59.4
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 4.6e-16 88.2 78 56.4
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 6.0e-16 87.8 74 55.4
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 6.0e-16 87.8 70 60.0
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 6.0e-16 87.8 70 60.0
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 6.0e-16 87.8 68 61.8
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 7.8e-16 87.4 70 60.0
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 7.8e-16 87.4 73 57.5
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 7.8e-16 87.4 73 57.5
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 7.8e-16 87.4 71 57.7
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 1.3e-15 86.7 74 58.1
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 1.3e-15 86.7 74 58.1
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 3.0e-15 85.5 70 51.4
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.0e-15 85.5 70 58.6
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.0e-15 85.5 70 58.6
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 5.1e-15 84.7 74 56.8
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 6.6e-15 84.3 72 52.8
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 6.6e-15 84.3 58 67.2
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 6.6e-15 84.3 74 50.0
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 8.6e-15 84.0 72 54.2
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 8.6e-15 84.0 72 55.6
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 1.9e-14 82.8 74 52.7
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 1.9e-14 82.8 70 55.7
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 3.3e-14 82.0 74 55.4
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 3.3e-14 82.0 72 54.2
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 4.3e-14 81.6 72 52.8
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 4.3e-14 81.6 70 55.7
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 4.3e-14 81.6 74 50.0
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 5.6e-14 81.3 70 54.3
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 5.6e-14 81.3 67 50.7
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 5.6e-14 81.3 70 48.6
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 7.3e-14 80.9 70 55.7
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 1.2e-13 80.1 75 53.3
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 1.6e-13 79.7 70 60.0
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 1.6e-13 79.7 83 55.4
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 2.1e-13 79.3 70 58.6
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 2.8e-13 79.0 71 56.3
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 3.6e-13 78.6 76 55.3
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 4.7e-13 78.2 71 56.3
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 4.7e-13 78.2 71 56.3
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 4.7e-13 78.2 68 54.4
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 1.1e-12 77.0 75 50.7
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 1.8e-12 76.3 70 57.1
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 1.8e-12 76.3 71 54.9
SGA_v2.0_scaffold185G40082 Striga asiatica HOM05D000003 ORTHO05D017136 2.3e-12 75.9 35 88.6
SGA_v2.0_scaffold91G28061 Striga asiatica HOM05D000003 ORTHO05D017136 1.2e-11 73.6 37 86.5
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 1.5e-11 73.2 70 55.7
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 3.4e-11 72.0 70 52.9
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 3.4e-11 72.0 70 52.9
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 4.4e-11 71.6 53 66.0
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 4.4e-11 71.6 47 61.7
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 1.3e-10 70.1 66 51.5
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 3.7e-10 68.6 71 53.5
SGA_v2.0_scaffold424G51472 Striga asiatica HOM05D000003 ORTHO05D011213 1.4e-09 66.6 33 81.8
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 5.4e-09 64.7 57 56.1
BcaC07g39374 Brassica carinata HOM05D001997 ORTHO05D004620 5.4e-09 64.7 57 56.1
AagrBONN_evm.TU.Sc2ySwM_228.3298 Anthoceros agrestis HOM05D001997 ORTHO05D004620 7.1e-09 64.3 79 45.6
C03p28740 Brassica napus HOM05D001997 ORTHO05D004620 6.0e-08 61.2 44 65.9
SGA_v2.0_scaffold27G11529 Striga asiatica HOM05D000003 ORTHO05D017136 7.8e-08 60.8 38 65.8
SGA_v2.0_scaffold240G44154 Striga asiatica HOM05D001437 ORTHO05D001297 5.1e-07 58.2 38 63.2
Hund00190 Selenicereus undatus HOM05D001997 ORTHO05D004620 4.3e-06 55.1 87 40.2
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 9.5e-06 53.9 75 40.0


User provided reference genes

Program Settings