Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G02459 Striga asiatica HOM05D007065 ORTHO05D008960 3.3e-90 335.1 180 100.0
MSTRG.20552 Avicennia marina HOM05D007065 ORTHO05D008960 4.1e-56 221.9 185 70.3
MSTRG.17000 Avicennia marina HOM05D007065 ORTHO05D008960 3.6e-52 208.8 188 67.0
Migut.B01254 Erythranthe guttata HOM05D007065 ORTHO05D008960 1.2e-42 177.2 189 61.4
SalBow5G3075 Salvia bowleyana HOM05D007065 ORTHO05D008960 4.1e-40 168.7 161 60.9
SalBow5G0133 Salvia bowleyana HOM05D007065 ORTHO05D008960 4.5e-39 165.2 165 58.2
unitig_22.g5430 Utricularia gibba HOM05D007065 ORTHO05D008960 3.4e-34 149.1 184 54.3
Cc02_g30050 Coffea canephora HOM05D007065 ORTHO05D008960 1.7e-33 146.7 197 49.2
Solyc01g088140.3 Solanum lycopersicum HOM05D007065 ORTHO05D008960 6.3e-33 144.8 184 52.7
Sopen01g035020 Solanum pennellii HOM05D007065 ORTHO05D008960 2.4e-32 142.9 184 52.2
PGSC0003DMG400006766 Solanum tuberosum HOM05D007065 ORTHO05D008960 1.2e-31 140.6 182 52.2
MD07G1026200 Malus domestica HOM05D007065 ORTHO05D008960 5.9e-31 138.3 180 48.9
Lsat_1_v5_gn_1_99921 Lactuca sativa HOM05D007065 ORTHO05D008960 7.7e-31 137.9 174 50.6
QL04p012215 Quercus lobata HOM05D007065 ORTHO05D008960 1.0e-30 137.5 178 50.0
GSVIVG01001464001 Vitis vinifera HOM05D007065 ORTHO05D008960 2.3e-30 136.3 180 51.1
Dinv05022 Davidia involucrata HOM05D007065 ORTHO05D008960 5.0e-30 135.2 186 49.5
Oeu027356.1 Olea europaea HOM05D007065 ORTHO05D008960 6.5e-30 134.8 116 65.5
Lj3g0026300 Lotus japonicus HOM05D007065 ORTHO05D008960 1.1e-29 134.0 174 47.7
Lalb_Chr04g0263741 Lupinus albus HOM05D007065 ORTHO05D008960 1.1e-29 134.0 179 46.9
CiPaw.13G009300 Carya illinoinensis HOM05D007065 ORTHO05D008960 2.5e-29 132.9 185 48.1
Peaxi162Scf01115g00110 Petunia axillaris HOM05D007065 ORTHO05D008960 3.2e-29 132.5 178 50.6
Ca_14187_v3 Cicer arietinum L. HOM05D007065 ORTHO05D008960 5.5e-29 131.7 173 48.0
MD02G1298000 Malus domestica HOM05D007065 ORTHO05D008960 8.0e-28 127.9 180 48.3
Nitab4.5_0000316g0330 Nicotiana tabacum HOM05D007065 ORTHO05D008960 1.0e-27 127.5 182 50.0
Nn2g15140 Nelumbo nucifera HOM05D007065 ORTHO05D008960 1.4e-27 127.1 181 47.0
Nitab4.5_0016351g0020 Nicotiana tabacum HOM05D007065 ORTHO05D008960 2.3e-27 126.3 103 66.0
Peaxi162Scf01115g00011 Petunia axillaris HOM05D007065 ORTHO05D008960 2.3e-27 126.3 120 60.8
MELO3C005114.2 Cucumis melo HOM05D007065 ORTHO05D008960 5.2e-27 125.2 185 46.5
HanXRQChr01g0020971 Helianthus annuus HOM05D007065 ORTHO05D008960 1.2e-26 124.0 177 47.5
CsaV3_5G024860 Cucumis sativus L. HOM05D007065 ORTHO05D008960 2.0e-26 123.2 183 47.5
Psat5g211000 Pisum sativum HOM05D007065 ORTHO05D008960 2.0e-26 123.2 121 56.2
PGR031G2384 Punica granatum HOM05D007065 ORTHO05D008960 3.4e-26 122.5 180 47.8
Manes.04G064100 Manihot esculenta HOM05D007065 ORTHO05D008960 4.4e-26 122.1 181 48.1
Medtr3g436080 Medicago truncatula HOM05D007065 ORTHO05D008960 4.4e-26 122.1 173 45.7
arahy.Tifrunner.gnm1.ann1.D1ESAM Arachis hypogaea HOM05D007065 ORTHO05D008960 5.7e-26 121.7 178 46.6
PSO339G2565 Papaver somniferum HOM05D007065 ORTHO05D008960 9.8e-26 120.9 171 48.0
Aqoxy1G00221 Aquilegia oxysepala HOM05D007065 ORTHO05D008960 1.7e-25 120.2 177 44.6
ECA248G1453 Erigeron canadensis HOM05D007065 ORTHO05D008960 2.8e-25 119.4 186 44.6
Eucgr.G03272 Eucalyptus grandis HOM05D007065 ORTHO05D008960 2.8e-25 119.4 188 46.8
MBI13_g15309_MAGBIO Magnolia biondii HOM05D007065 ORTHO05D008960 2.8e-25 119.4 177 46.9
EL10Ac2g02888 Beta vulgaris HOM05D007065 ORTHO05D008960 3.7e-25 119.0 182 45.1
PSO384G3763 Papaver somniferum HOM05D007065 ORTHO05D008960 8.3e-25 117.9 171 47.4
Sp6g30550 Schrenkiella parvula HOM05D007065 ORTHO05D008960 1.1e-24 117.5 181 47.0
Sc10g0004180 Simmondsia chinensis HOM05D007065 ORTHO05D008960 3.1e-24 115.9 102 60.8
Actinidia19434 Actinidia chinensis HOM05D007065 ORTHO05D008960 4.1e-24 115.5 181 44.2
ClCG01G007790 Citrullus lanatus HOM05D007065 ORTHO05D008960 4.1e-24 115.5 181 45.3
ATR1134G106 Amborella trichopoda HOM05D007065 ORTHO05D008960 5.4e-24 115.2 179 48.0
AUR62037250 Chenopodium quinoa HOM05D007065 ORTHO05D008960 9.2e-24 114.4 118 55.1
Oeu049459.1 Olea europaea HOM05D007065 ORTHO05D008960 9.2e-24 114.4 96 67.7
Sed0022285 Sechium edule HOM05D007065 ORTHO05D008960 9.2e-24 114.4 182 45.1
Rhsim07G0061200 Rhododendron simsii HOM05D007065 ORTHO05D008960 1.2e-23 114.0 200 43.0
THA.LOC104819111 Tarenaya hassleriana HOM05D007065 ORTHO05D008960 1.2e-23 114.0 176 46.0
BraA10t44543Z Brassica rapa HOM05D007065 ORTHO05D008960 2.0e-23 113.2 182 47.3
Cfa010837 Carpinus fangiana HOM05D007065 ORTHO05D008960 2.0e-23 113.2 164 47.0
Phvul.005G034300 Phaseolus vulgaris HOM05D007065 ORTHO05D008960 2.0e-23 113.2 123 52.0
Hund13309 Selenicereus undatus HOM05D007065 ORTHO05D008960 2.0e-23 113.2 102 58.8
Glyma.11G157140 Glycine max HOM05D007065 ORTHO05D008960 2.7e-23 112.8 125 51.2
Aa31LG11G7640 Aethionema arabicum HOM05D007065 ORTHO05D008960 3.5e-23 112.5 185 47.0
A10p24790 Brassica napus HOM05D007065 ORTHO05D008960 3.5e-23 112.5 181 46.4
AUR62030541 Chenopodium quinoa HOM05D007065 ORTHO05D008960 3.5e-23 112.5 117 53.8
arahy.Tifrunner.gnm1.ann1.ZUZF0V Arachis hypogaea HOM05D007065 ORTHO05D008960 4.5e-23 112.1 169 45.0
BolC9t59205H Brassica oleracea HOM05D007065 ORTHO05D008960 4.5e-23 112.1 183 45.9
FvH4_7g02000 Fragaria vesca HOM05D007065 ORTHO05D008960 5.9e-23 111.7 183 43.2
Actinidia06280 Actinidia chinensis HOM05D007065 ORTHO05D008960 7.8e-23 111.3 178 45.5
FAN01G0916 Fragaria x ananassa HOM05D007065 ORTHO05D008960 1.3e-22 110.5 183 42.6
FAN06G0835 Fragaria x ananassa HOM05D007065 ORTHO05D008960 5.0e-22 108.6 179 41.3
C09p63610 Brassica napus HOM05D007065 ORTHO05D008960 8.6e-22 107.8 119 56.3
DCAR_022363 Daucus carota HOM05D007065 ORTHO05D008960 1.5e-21 107.1 175 48.0
Carub.0006s1163 Capsella rubella HOM05D007065 ORTHO05D008960 2.5e-21 106.3 178 44.9
Potri.003G203900 Populus trichocarpa HOM05D007065 ORTHO05D008960 2.5e-21 106.3 190 46.8
CDE04G3117 Ceratophyllum demersum HOM05D007065 ORTHO05D008960 3.3e-21 105.9 178 41.6
Thecc.10G002700 Theobroma cacao HOM05D007065 ORTHO05D008960 3.3e-21 105.9 123 53.7
Potri.001G020700 Populus trichocarpa HOM05D007065 ORTHO05D008960 1.6e-20 103.6 180 42.8
RcHm_v2.0_Chr1g0318991 Rosa chinensis HOM05D007065 ORTHO05D008960 1.6e-20 103.6 172 42.4
COL.COLO4_19334 Corchorus olitorius HOM05D002616 ORTHO05D003192 4.7e-20 102.1 121 54.5
CDE07G0125 Ceratophyllum demersum HOM05D007065 ORTHO05D008960 8.0e-20 101.3 174 40.8
AT5G13470 Arabidopsis thaliana HOM05D007065 ORTHO05D008960 1.0e-19 100.9 178 43.3
Duzib128G1478 Durio zibethinus HOM05D007065 ORTHO05D008960 1.0e-19 100.9 182 44.5
C02p06180 Brassica napus HOM05D007065 ORTHO05D008960 1.8e-19 100.1 179 41.9
BolC2t06559H Brassica oleracea HOM05D007065 ORTHO05D008960 1.8e-19 100.1 179 41.9
BcaNung01150 Brassica carinata HOM05D007065 ORTHO05D008960 3.0e-19 99.4 179 41.3
A02p01960 Brassica napus HOM05D007065 ORTHO05D008960 4.0e-19 99.0 178 43.8
Ah.12g065220 Amaranthus hybridus HOM05D007065 ORTHO05D008960 1.5e-18 97.1 138 44.9
AL6G24090 Arabidopsis lyrata HOM05D007065 ORTHO05D008960 1.5e-18 97.1 178 43.8
Cpa.g.sc197.20 Carica papaya HOM05D007065 ORTHO05D008960 2.0e-18 96.7 181 43.1
Duzib114G0680 Durio zibethinus HOM05D007065 ORTHO05D008960 2.0e-18 96.7 186 39.8
vmacro13712 Vaccinium macrocarpon HOM05D007065 ORTHO05D008960 3.4e-18 95.9 164 44.5
BcaNung01886 Brassica carinata HOM05D007065 ORTHO05D002715 7.5e-18 94.7 122 49.2
BraA02t05169Z Brassica rapa HOM05D007065 ORTHO05D008960 1.7e-17 93.6 178 40.4
Hma1.2p1_0579F.1_g182650 Hydrangea macrophylla HOM05D007065 ORTHO05D008960 4.9e-17 92.0 157 43.9
TPR.G15470 Trifolium pratense HOM05D007065 ORTHO05D008960 4.9e-17 92.0 100 53.0
TAR636G1654 Trochodendron aralioides HOM05D007065 ORTHO05D008960 6.4e-17 91.7 88 60.2
Gohir.D13G013700 Gossypium hirsutum HOM05D007065 ORTHO05D008960 8.3e-17 91.3 98 53.1
VMungo1080G1068 Vigna mungo HOM05D007065 ORTHO05D008960 1.4e-16 90.5 102 51.0
Sabra01G0015300 Salix brachista HOM05D007065 ORTHO05D008960 5.4e-16 88.6 180 42.2
Lj9P644T43 Lonicera japonica HOM05D007065 ORTHO05D008960 1.2e-15 87.4 103 55.3
Thhalv10014938m.g Eutrema salsugineum HOM05D007065 ORTHO05D008960 1.6e-15 87.0 165 43.0
Dinv32064 Davidia involucrata HOM05D007065 ORTHO05D008960 7.8e-15 84.7 153 43.1
CANSAT80G2361 Cannabis sativa HOM05D007065 ORTHO05D008960 1.7e-14 83.6 67 61.2
FAN28G1096 Fragaria x ananassa HOM05D007065 ORTHO05D008960 1.7e-14 83.6 83 55.4
HPP92_001654 Vanilla planifolia HOM05D007065 ORTHO05D008960 3.9e-14 82.4 193 35.2
FAN03G0341 Fragaria x ananassa HOM05D007065 ORTHO05D008960 8.6e-14 81.3 158 41.1
Thecc.03G067800 Theobroma cacao HOM05D007065 ORTHO05D008960 1.1e-13 80.9 88 52.3
Haze_03101 Corylus avellana HOM05D007065 ORTHO05D008960 1.5e-13 80.5 149 43.6
CSS0014876 Camellia sinensis var. sinensis HOM05D000388 ORTHO05D000473 4.3e-13 79.0 76 57.9
TWI09G1481 Tripterygium wilfordii HOM05D007065 ORTHO05D008960 1.2e-12 77.4 125 40.8
AagrBONN_evm.TU.Sc2ySwM_228.825 Anthoceros agrestis HOM05D007065 ORTHO05D008960 3.6e-12 75.9 171 37.4
Mapoly0014s0118 Marchantia polymorpha HOM05D007065 ORTHO05D008960 4.4e-10 68.9 181 35.9
Gohir.A13G012500 Gossypium hirsutum HOM05D007065 ORTHO05D008960 1.7e-09 67.0 78 52.6
Os01g0939400 Oryza sativa ssp. japonica HOM05D007065 ORTHO05D008960 8.3e-09 64.7 181 33.7
Gorai.013G014700 Gossypium raimondii HOM05D007065 ORTHO05D008960 5.4e-08 62.0 96 45.8
Zm00001eb141670 Zea mays HOM05D007065 ORTHO05D008960 1.3e-06 57.4 100 39.0


User provided reference genes

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