Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G02325 Striga asiatica HOM05D006682 ORTHO05D008627 6.0e-138 494.2 256 100.0
SGA_v2.0_scaffold42G16114 Striga asiatica HOM05D006682 ORTHO05D008627 5.9e-125 451.1 275 86.9
Migut.O00578 Erythranthe guttata HOM05D006682 ORTHO05D008627 1.3e-87 327.0 285 64.2
SalBow5G1085 Salvia bowleyana HOM05D006682 ORTHO05D008627 1.1e-86 323.9 280 65.0
MSTRG.18416 Avicennia marina HOM05D006682 ORTHO05D008627 4.1e-86 322.0 270 67.8
SalBow8G0417 Salvia bowleyana HOM05D006682 ORTHO05D008627 9.5e-83 310.8 270 65.2
PGSC0003DMG400023913 Solanum tuberosum HOM05D006682 ORTHO05D008627 8.9e-73 277.7 282 59.6
Sopen03g006750 Solanum pennellii HOM05D006682 ORTHO05D008627 2.0e-72 276.6 282 58.9
Solyc03g033990.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 2.6e-72 276.2 282 58.9
CAN.G350.11 Capsicum annuum HOM05D006682 ORTHO05D008627 5.8e-72 275.0 270 61.1
PGSC0003DMG400009816 Solanum tuberosum HOM05D006682 ORTHO05D008627 4.9e-71 271.9 281 59.1
Solyc09g005870.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 8.3e-71 271.2 287 57.8
Sopen09g001750 Solanum pennellii HOM05D006682 ORTHO05D008627 3.2e-70 269.2 274 59.9
Nitab4.5_0002026g0020 Nicotiana tabacum HOM05D006682 ORTHO05D008627 2.1e-69 266.5 283 56.9
Gohir.A01G228400 Gossypium hirsutum HOM05D006682 ORTHO05D008627 6.0e-69 265.0 256 57.8
Cc00_g20370 Coffea canephora HOM05D006682 ORTHO05D008627 1.3e-68 263.8 228 63.6
MD11G1029300 Malus domestica HOM05D006682 ORTHO05D008627 1.7e-68 263.5 248 61.3
Gohir.D01G218300 Gossypium hirsutum HOM05D006682 ORTHO05D008627 2.3e-68 263.1 258 57.8
Gorai.002G265000 Gossypium raimondii HOM05D006682 ORTHO05D008627 2.3e-68 263.1 258 57.8
MD03G1024200 Malus domestica HOM05D006682 ORTHO05D008627 8.6e-68 261.2 251 60.2
FAN11G1823 Fragaria x ananassa HOM05D006682 ORTHO05D008627 1.5e-67 260.4 280 56.8
FAN25G2895 Fragaria x ananassa HOM05D006682 ORTHO05D008627 3.3e-67 259.2 277 58.1
FvH4_3g43060 Fragaria vesca HOM05D006682 ORTHO05D008627 4.3e-67 258.8 273 58.2
Thecc.05G010600 Theobroma cacao HOM05D006682 ORTHO05D008627 5.6e-67 258.5 259 59.1
Cpa.g.sc21.74 Carica papaya HOM05D006682 ORTHO05D008627 7.3e-67 258.1 228 63.2
FAN21G3201 Fragaria x ananassa HOM05D006682 ORTHO05D008627 9.5e-67 257.7 277 57.8
RcHm_v2.0_Chr5g0077121 Rosa chinensis HOM05D006682 ORTHO05D008627 9.5e-67 257.7 280 58.2
COL.COLO4_14494 Corchorus olitorius HOM05D006682 ORTHO05D008627 1.2e-66 257.3 233 62.2
QL01p005270 Quercus lobata HOM05D006682 ORTHO05D008627 1.6e-66 256.9 249 60.2
Prupe.6G023600 Prunus persica HOM05D006682 ORTHO05D008627 4.7e-66 255.4 270 57.8
Haze_23101 Corylus avellana HOM05D006682 ORTHO05D008627 6.2e-66 255.0 244 60.2
FAN16G2773 Fragaria x ananassa HOM05D006682 ORTHO05D008627 8.1e-66 254.6 280 56.1
Lj1A355T5 Lonicera japonica HOM05D006682 ORTHO05D008627 8.1e-66 254.6 269 56.5
Aqoxy2G00055 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 1.1e-65 254.2 217 64.1
CSS0008647 Camellia sinensis var. sinensis HOM05D006682 ORTHO05D008627 1.4e-65 253.8 229 62.9
Manes.06G166600 Manihot esculenta HOM05D006682 ORTHO05D008627 1.4e-65 253.8 262 58.0
PGR102G2323 Punica granatum HOM05D006682 ORTHO05D008627 1.8e-65 253.4 251 59.8
Cfa009742 Carpinus fangiana HOM05D006682 ORTHO05D008627 3.1e-65 252.7 190 69.5
C08p27040 Brassica napus HOM05D006682 ORTHO05D008627 4.0e-65 252.3 256 58.2
THA.LOC104807019 Tarenaya hassleriana HOM05D006682 ORTHO05D008627 8.9e-65 251.1 225 63.1
Ciclev10012386m.g Citrus clementina HOM05D006682 ORTHO05D008627 2.0e-64 250.0 267 55.4
Eucgr.B03679 Eucalyptus grandis HOM05D006682 ORTHO05D008627 2.0e-64 250.0 263 57.4
Cpa.g.sc12.111 Carica papaya HOM05D006682 ORTHO05D008627 2.6e-64 249.6 177 71.8
ECA233G5908 Erigeron canadensis HOM05D006682 ORTHO05D008627 3.4e-64 249.2 255 58.4
Hma1.2p1_0401F.1_g144700 Hydrangea macrophylla HOM05D006682 ORTHO05D008627 3.4e-64 249.2 190 70.0
Aa31sc655G20 Aethionema arabicum HOM05D006682 ORTHO05D008627 5.8e-64 248.4 193 67.9
Rhsim13G0223700 Rhododendron simsii HOM05D006682 ORTHO05D008627 5.8e-64 248.4 257 58.8
Thhalv10010653m.g Eutrema salsugineum HOM05D006682 ORTHO05D008627 7.5e-64 248.1 258 58.1
MBI13_g31544_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 7.5e-64 248.1 239 58.2
Sabra03G0151700 Salix brachista HOM05D006682 ORTHO05D008627 7.5e-64 248.1 255 58.4
Duzib128G1702 Durio zibethinus HOM05D006682 ORTHO05D008627 9.9e-64 247.7 260 56.5
Sp5g10480 Schrenkiella parvula HOM05D006682 ORTHO05D008627 9.9e-64 247.7 251 58.2
ClCG03G013350 Citrullus lanatus HOM05D006682 ORTHO05D008627 1.3e-63 247.3 253 58.1
Lsat_1_v5_gn_8_74980 Lactuca sativa HOM05D006682 ORTHO05D008627 1.3e-63 247.3 265 57.0
TWI38G0692 Tripterygium wilfordii HOM05D006682 ORTHO05D008627 1.3e-63 247.3 266 56.4
arahy.Tifrunner.gnm1.ann1.11YZMF Arachis hypogaea HOM05D006682 ORTHO05D008627 1.7e-63 246.9 266 56.8
arahy.Tifrunner.gnm1.ann1.1N3H6Z Arachis hypogaea HOM05D006682 ORTHO05D008627 1.7e-63 246.9 267 56.2
EL10Ac3g05849 Beta vulgaris HOM05D006682 ORTHO05D008627 2.2e-63 246.5 261 55.9
BcaB01g00416 Brassica carinata HOM05D006682 ORTHO05D008627 2.2e-63 246.5 254 58.3
BcaB01g00476 Brassica carinata HOM05D006682 ORTHO05D008627 2.2e-63 246.5 257 57.6
BolC8t50319H Brassica oleracea HOM05D006682 ORTHO05D008627 2.2e-63 246.5 257 57.6
CARHR161420 Cardamine hirsuta HOM05D006682 ORTHO05D008627 3.7e-63 245.7 264 56.1
Glyma.11G132200 Glycine max HOM05D006682 ORTHO05D008627 3.7e-63 245.7 262 54.2
Dinv36276 Davidia involucrata HOM05D006682 ORTHO05D008627 4.9e-63 245.4 257 58.4
A09p44960 Brassica napus HOM05D006682 ORTHO05D008627 6.4e-63 245.0 257 57.2
BraA09t39955Z Brassica rapa HOM05D006682 ORTHO05D008627 6.4e-63 245.0 257 57.2
CANSAT80G0450 Cannabis sativa HOM05D006682 ORTHO05D008627 6.4e-63 245.0 191 67.5
CiPaw.13G163300 Carya illinoinensis HOM05D006682 ORTHO05D008627 6.4e-63 245.0 252 57.9
Nn3g18894 Nelumbo nucifera HOM05D006682 ORTHO05D008627 6.4e-63 245.0 197 66.0
Actinidia16314 Actinidia chinensis HOM05D006682 ORTHO05D008627 8.3e-63 244.6 254 57.1
AT3G51790 Arabidopsis thaliana HOM05D006682 ORTHO05D008627 8.3e-63 244.6 248 58.1
AL5G32250 Arabidopsis lyrata HOM05D006682 ORTHO05D008627 1.1e-62 244.2 256 57.0
Lj3g0017048 Lotus japonicus HOM05D006682 ORTHO05D008627 1.4e-62 243.8 198 64.1
TAR623G0396 Trochodendron aralioides HOM05D006682 ORTHO05D008627 1.4e-62 243.8 196 66.3
Phvul.011G058400 Phaseolus vulgaris HOM05D006682 ORTHO05D008627 1.9e-62 243.4 257 55.6
TAR623G0191 Trochodendron aralioides HOM05D006682 ORTHO05D008627 2.4e-62 243.0 196 65.8
Glyma.12G056800 Glycine max HOM05D006682 ORTHO05D008627 4.1e-62 242.3 200 61.5
Ah.13g066750 Amaranthus hybridus HOM05D006682 ORTHO05D008627 5.4e-62 241.9 255 54.1
Potri.003G205200 Populus trichocarpa HOM05D006682 ORTHO05D008627 7.1e-62 241.5 255 56.5
VMungo1127G1130 Vigna mungo HOM05D006682 ORTHO05D008627 9.2e-62 241.1 244 56.1
Sc16g0009700 Simmondsia chinensis HOM05D006682 ORTHO05D008627 1.6e-61 240.4 194 65.5
SHI11277 Sapria himalayana HOM05D006682 ORTHO05D008627 6.0e-61 238.4 253 56.1
Lalb_Chr08g0245621 Lupinus albus HOM05D006682 ORTHO05D008627 1.0e-60 237.7 250 54.0
Sed0028089 Sechium edule HOM05D006682 ORTHO05D008627 3.0e-60 236.1 246 53.3
CsaV3_1G042700 Cucumis sativus L. HOM05D006682 ORTHO05D008627 3.9e-60 235.7 253 55.7
MELO3C015204.2 Cucumis melo HOM05D006682 ORTHO05D008627 5.1e-60 235.3 249 55.8
HPP92_017841 Vanilla planifolia HOM05D006682 ORTHO05D008627 1.9e-59 233.4 265 54.0
Medtr4g065610 Medicago truncatula HOM05D006682 ORTHO05D008627 5.6e-59 231.9 260 54.6
DCAR_014742 Daucus carota HOM05D006682 ORTHO05D008627 7.3e-59 231.5 176 69.3
CDE03G0115 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 9.5e-59 231.1 196 60.2
Ca_20573_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 1.2e-58 230.7 189 62.4
Ca_30508_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 1.2e-58 230.7 189 62.4
Manes.14G001136 Manihot esculenta HOM05D006682 ORTHO05D008627 1.2e-58 230.7 253 55.3
CDE04G1557 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 2.1e-58 229.9 199 60.8
ATR0605G320 Amborella trichopoda HOM05D006682 ORTHO05D008627 6.2e-58 228.4 253 54.9
Psat7g213040 Pisum sativum HOM05D006682 ORTHO05D008627 2.4e-57 226.5 192 62.5
unitig_26.g10134 Utricularia gibba HOM05D006682 ORTHO05D008627 5.2e-57 225.3 272 54.4
Zm00001eb022720 Zea mays HOM05D006682 ORTHO05D008627 5.4e-54 215.3 210 57.1
Zm00001eb394030 Zea mays HOM05D006682 ORTHO05D008627 1.2e-53 214.2 211 54.0
PSO384G2735 Papaver somniferum HOM05D006682 ORTHO05D008627 6.0e-53 211.8 194 55.7
Os10g0545800 Oryza sativa ssp. japonica HOM05D006682 ORTHO05D008627 7.8e-53 211.5 196 57.7
SEGI_12993 Sequoiadendron giganteum HOM05D006682 ORTHO05D008627 1.0e-52 211.1 185 57.3
PSO339G5979 Papaver somniferum HOM05D006682 ORTHO05D008627 1.3e-52 210.7 195 54.4
TPR.G35025 Trifolium pratense HOM05D006682 ORTHO05D008627 3.0e-52 209.5 221 52.5
Lj3P268T21 Lonicera japonica HOM05D006682 ORTHO05D008627 7.3e-51 204.9 167 67.1
AUR62015492 Chenopodium quinoa HOM05D006682 ORTHO05D008627 1.6e-50 203.8 236 52.1
Mapoly0003s0021 Marchantia polymorpha HOM05D006682 ORTHO05D008627 7.6e-48 194.9 173 57.2
Pp3c14_20080 Physcomitrium patens HOM05D006682 ORTHO05D008627 9.9e-48 194.5 213 49.3
HanXRQChr17g0534121 Helianthus annuus HOM05D006682 ORTHO05D008627 1.1e-43 181.0 180 56.1
AUR62002207 Chenopodium quinoa HOM05D006072 ORTHO05D007363 1.9e-43 180.3 151 64.2
Psat7g244600 Pisum sativum HOM05D006682 ORTHO05D008627 2.4e-41 173.3 135 63.7
Nitab4.5_0000492g0110 Nicotiana tabacum HOM05D006682 ORTHO05D008627 4.8e-26 122.5 123 57.7
Carub.0005s1814 Capsella rubella HOM05D006682 ORTHO05D008627 9.3e-22 108.2 132 50.0
GSVIVG01025303001 Vitis vinifera HOM05D006682 ORTHO05D008627 2.1e-21 107.1 83 67.5
EL10Ac6g14324 Beta vulgaris HOM05D006682 ORTHO05D007363 1.1e-17 94.7 71 62.0
CBR_g49937 Chara braunii HOM05D000019 ORTHO05D000002 9.4e-14 81.6 153 34.6
MBI13_g31542_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 7.9e-13 78.6 79 48.1
Peaxi162Scf00029g00296 Petunia axillaris HOM05D006682 ORTHO05D008627 1.4e-12 77.8 77 58.4
Aqoxy4G00577 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 3.4e-08 63.2 54 63.0
Actinidia06890 Actinidia chinensis HOM05D006682 ORTHO05D054450 4.5e-08 62.8 106 39.6
MBI13_g31543_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 9.4e-06 55.1 37 59.5


User provided reference genes

Program Settings