Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 0.0e+00 1259.6 637 100.0
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 4.7e-224 781.6 523 75.5
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 1.5e-217 760.0 526 74.5
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 2.5e-201 706.1 529 68.4
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 2.1e-200 703.0 525 67.6
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 6.2e-200 701.4 527 69.3
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 2.6e-198 696.0 540 67.4
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 9.9e-198 694.1 522 69.0
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 3.8e-197 692.2 526 67.3
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 8.4e-197 691.0 525 66.7
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 9.3e-196 687.6 525 67.2
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 9.3e-196 687.6 525 67.2
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 1.9e-193 679.9 524 67.6
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 1.8e-191 673.3 525 65.5
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 5.3e-191 671.8 525 67.0
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 7.6e-190 667.9 525 65.3
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 2.2e-189 666.4 524 65.8
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 3.8e-189 665.6 524 65.6
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 1.1e-188 664.1 546 63.6
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 3.5e-187 659.1 531 64.2
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 3.9e-186 655.6 546 64.8
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 5.6e-185 651.7 523 64.8
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 7.4e-185 651.4 526 65.2
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 2.8e-184 649.4 530 62.6
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 2.8e-184 649.4 525 64.6
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 2.8e-184 649.4 546 64.5
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 1.1e-183 647.5 522 64.9
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 1.8e-183 646.7 525 63.2
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 9.0e-183 644.4 527 64.5
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 7.6e-182 641.3 516 64.5
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 1.0e-181 641.0 542 62.4
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 1.3e-181 640.6 555 60.4
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 3.8e-181 639.0 522 64.6
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 6.5e-181 638.3 532 63.3
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 6.5e-181 638.3 543 62.1
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 8.4e-181 637.9 523 64.4
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 1.4e-180 637.1 522 65.3
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 1.4e-180 637.1 522 64.6
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 1.9e-180 636.7 525 63.2
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 1.9e-180 636.7 543 62.2
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 2.5e-180 636.3 504 64.9
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 7.1e-180 634.8 529 62.9
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 9.3e-180 634.4 543 62.1
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 1.0e-178 630.9 505 64.2
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 1.0e-178 630.9 505 65.0
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 8.7e-178 627.9 527 62.0
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 3.3e-177 625.9 526 62.9
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 7.4e-177 624.8 521 63.1
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 2.1e-176 623.2 530 61.7
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 3.7e-176 622.5 528 61.6
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 6.2e-176 621.7 532 61.1
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 8.2e-176 621.3 527 62.0
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 1.1e-175 620.9 529 61.6
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 1.1e-175 620.9 494 65.2
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 1.2e-174 617.5 532 61.8
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 1.7e-173 613.6 520 62.1
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 2.9e-173 612.8 525 61.0
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 5.0e-173 612.1 532 60.7
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 1.4e-172 610.5 527 60.5
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 1.2e-171 607.4 528 60.2
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 2.7e-171 606.3 530 60.8
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 2.7e-171 606.3 544 59.9
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 1.0e-170 604.4 527 60.7
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 1.8e-170 603.6 549 59.9
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 3.9e-170 602.4 549 59.6
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 3.9e-170 602.4 527 59.6
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 1.9e-169 600.1 521 61.4
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 4.3e-169 599.0 529 58.4
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 5.7e-169 598.6 534 59.0
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 1.4e-167 594.0 528 59.5
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.1e-167 592.4 505 61.4
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 5.3e-167 592.0 524 57.8
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 1.0e-165 587.8 525 58.3
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.0e-165 587.8 505 61.0
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.2e-165 586.6 505 61.0
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 5.0e-165 585.5 505 60.8
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 2.5e-164 583.2 514 58.8
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 2.5e-164 583.2 538 58.2
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.2e-164 582.8 505 60.8
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 7.2e-164 581.6 524 58.2
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 9.4e-164 581.3 524 58.4
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 2.3e-162 576.6 527 56.9
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 5.1e-162 575.5 527 57.3
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 5.7e-161 572.0 527 57.1
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 9.7e-161 571.2 530 58.5
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 1.3e-160 570.9 527 56.9
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 2.2e-160 570.1 527 58.1
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.8e-160 569.7 506 59.5
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 1.8e-159 567.0 549 55.0
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 1.2e-158 564.3 526 56.3
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 5.9e-158 562.0 525 56.6
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 8.5e-157 558.1 531 56.3
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 8.5e-157 558.1 522 56.9
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 9.4e-156 554.7 522 57.7
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 3.9e-154 549.3 520 55.0
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 3.9e-154 549.3 562 54.4
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 5.1e-154 548.9 545 54.9
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 3.1e-151 539.7 419 66.3
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 9.1e-143 511.5 425 62.1
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 6.5e-141 505.4 554 51.6
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 5.5e-140 502.3 553 50.6
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 5.5e-132 475.7 419 58.2
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 1.2e-126 458.0 394 60.9
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 4.5e-126 456.1 528 51.7
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 7.0e-119 432.2 544 46.5
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 7.8e-118 428.7 532 46.8
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 1.3e-112 411.4 496 47.8
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 9.2e-111 405.2 590 39.8
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 4.3e-108 396.4 341 60.4
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 1.6e-107 394.4 322 64.0
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 4.7e-107 392.9 464 47.6
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 7.5e-105 385.6 426 52.3
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 1.5e-100 371.3 306 65.7
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 6.0e-94 349.4 359 52.9
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 1.8e-90 337.8 493 40.0
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 1.3e-88 331.6 424 46.7
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 4.2e-87 326.6 508 38.4
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 1.6e-86 324.7 468 39.7
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 3.6e-83 313.5 264 61.4
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 8.4e-80 302.4 466 38.0
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 4.8e-75 286.6 491 38.5
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 8.1e-75 285.8 337 50.1
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 1.4e-74 285.0 491 38.5
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 5.1e-61 240.0 268 51.1
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 3.7e-59 233.8 211 60.7
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 1.1e-58 232.3 267 50.9
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 6.7e-53 213.0 231 50.2
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 2.0e-33 148.3 98 78.6
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 3.5e-33 147.5 151 55.0
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 3.5e-33 147.5 207 46.9
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 1.1e-31 142.5 569 23.6
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 6.7e-29 133.3 124 56.5
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 7.5e-28 129.8 146 52.7
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 1.3e-27 129.0 547 27.1
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 4.8e-27 127.1 88 73.9
A09p50030 Brassica napus HOM05D001925 ORTHO05D005701 8.2e-27 126.3 88 67.0
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 1.1e-26 125.9 452 28.3
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.1e-23 115.9 93 62.4
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 2.5e-23 114.8 117 58.1
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 7.2e-23 113.2 90 67.8
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.4e-20 104.0 92 56.5
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 7.5e-20 103.2 488 23.2
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 1.4e-18 99.0 85 58.8
MBI04_g47116_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 4.5e-17 94.0 171 36.3
Thhalv10027287m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 2.6e-12 78.2 89 42.7
SGA_v2.0_scaffold276G46625 Striga asiatica HOM05D025150 ORTHO05D005701 2.2e-11 75.1 74 59.5
SGA_v2.0_scaffold2881G54235 Striga asiatica HOM05D001925 ORTHO05D005701 1.8e-10 72.0 49 77.6
SGA_v2.0_scaffold64G21971 Striga asiatica HOM05D025150 ORTHO05D005701 3.5e-09 67.8 106 45.3
Cre07.g355200 Chlamydomonas reinhardtii HOM05D001925 ORTHO05D005701 1.2e-06 59.3 479 22.1


User provided reference genes

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