Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G02300 Striga asiatica HOM05D001925 ORTHO05D004257 4.6e-146 521.2 256 100.0
SalBow3G4075 Salvia bowleyana HOM05D001925 ORTHO05D004257 1.0e-44 184.5 306 41.2
Migut.B01767 Erythranthe guttata HOM05D001925 ORTHO05D004257 2.1e-42 176.8 287 42.9
SGA_v2.0_scaffold95G28831 Striga asiatica HOM05D001925 ORTHO05D004257 2.1e-42 176.8 224 46.4
Dinv32493 Davidia involucrata HOM05D001925 ORTHO05D004257 2.1e-29 133.7 298 32.6
unitig_8.g3798 Utricularia gibba HOM05D001925 ORTHO05D004257 2.1e-29 133.7 292 34.2
Lj9A584T67 Lonicera japonica HOM05D001925 ORTHO05D004257 3.9e-28 129.4 269 33.8
Ciclev10021244m.g Citrus clementina HOM05D001925 ORTHO05D004257 2.1e-26 123.6 295 32.5
Manes.01G255700 Manihot esculenta HOM05D001925 ORTHO05D004257 4.0e-25 119.4 266 31.6
MSTRG.14225 Avicennia marina HOM05D001925 ORTHO05D004257 6.9e-25 118.6 291 34.0
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 1.2e-24 117.9 292 32.2
Oeu031215.1 Olea europaea HOM05D001925 ORTHO05D004257 1.2e-24 117.9 290 31.7
CSS0032978 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D004257 2.0e-24 117.1 296 30.4
Thhalv10029186m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 2.6e-24 116.7 274 32.5
Actinidia10041 Actinidia chinensis HOM05D001925 ORTHO05D004257 3.4e-24 116.3 282 32.3
vmacro20933 Vaccinium macrocarpon HOM05D001925 ORTHO05D004257 3.4e-24 116.3 286 30.1
Migut.M00740 Erythranthe guttata HOM05D001925 ORTHO05D004257 4.5e-24 115.9 288 31.9
Gohir.A11G089800 Gossypium hirsutum HOM05D001925 ORTHO05D004257 4.5e-24 115.9 278 32.0
Oeu061351.3 Olea europaea HOM05D001925 ORTHO05D004257 5.8e-24 115.5 234 32.9
CAN.G78.91 Capsicum annuum HOM05D001925 ORTHO05D004257 7.6e-24 115.2 295 29.8
Duzib138G1880 Durio zibethinus HOM05D001925 ORTHO05D004257 1.0e-23 114.8 279 31.9
Thecc.01G357700 Theobroma cacao HOM05D001925 ORTHO05D004257 1.0e-23 114.8 295 31.5
Nitab4.5_0000386g0060 Nicotiana tabacum HOM05D001925 ORTHO05D004257 1.3e-23 114.4 289 30.4
SalBow8G4919 Salvia bowleyana HOM05D001925 ORTHO05D004257 2.2e-23 113.6 290 29.3
Gorai.007G100500 Gossypium raimondii HOM05D001925 ORTHO05D004257 2.9e-23 113.2 278 31.7
Atru.chr5.510 Acer truncatum HOM05D001925 ORTHO05D004257 4.9e-23 112.5 303 32.0
CsaV3_3G008850 Cucumis sativus L. HOM05D001925 ORTHO05D004257 4.9e-23 112.5 291 31.3
Sopen01g038550 Solanum pennellii HOM05D001925 ORTHO05D004257 8.4e-23 111.7 267 32.2
Gohir.D11G094100 Gossypium hirsutum HOM05D001925 ORTHO05D004257 1.1e-22 111.3 278 31.7
Hma1.2p1_0780F.1_g216780 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 1.1e-22 111.3 309 31.7
Ca_07929_v3 Cicer arietinum L. HOM05D001925 ORTHO05D004257 1.4e-22 110.9 289 29.4
Sc26g0000880 Simmondsia chinensis HOM05D001925 ORTHO05D004257 1.4e-22 110.9 273 33.0
ClCG05G001470 Citrullus lanatus HOM05D001925 ORTHO05D004257 1.9e-22 110.5 292 32.2
Manes.05G033200 Manihot esculenta HOM05D001925 ORTHO05D004257 1.9e-22 110.5 275 32.0
AL6G53090 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 2.7e-21 106.7 263 31.2
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 2.7e-21 106.7 296 31.4
Hma1.2p1_0780F.1_g216750 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 2.7e-21 106.7 316 29.1
Nitab4.5_0000583g0190 Nicotiana tabacum HOM05D001925 ORTHO05D004257 2.7e-21 106.7 250 33.6
MELO3C006104.2 Cucumis melo HOM05D001925 ORTHO05D004257 4.6e-21 105.9 291 30.9
Sp6g00430 Schrenkiella parvula HOM05D001925 ORTHO05D004257 4.6e-21 105.9 278 32.7
PGSC0003DMG400000175 Solanum tuberosum HOM05D001925 ORTHO05D004257 6.0e-21 105.5 298 29.2
TAR375G1105 Trochodendron aralioides HOM05D001925 ORTHO05D004257 6.0e-21 105.5 302 31.1
Duzib133G0433 Durio zibethinus HOM05D001925 ORTHO05D004257 7.9e-21 105.1 292 29.1
Medtr7g077860 Medicago truncatula HOM05D001925 ORTHO05D004257 7.9e-21 105.1 298 27.9
Sc23g0002810 Simmondsia chinensis HOM05D001925 ORTHO05D004257 7.9e-21 105.1 238 32.4
Glyma.09G258600 Glycine max HOM05D001925 ORTHO05D004257 1.0e-20 104.8 296 29.1
THA.LOC104825845 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 1.0e-20 104.8 265 30.2
Glyma.18G234100 Glycine max HOM05D001925 ORTHO05D004257 1.3e-20 104.4 284 29.9
Aa31LG5G590 Aethionema arabicum HOM05D001925 ORTHO05D004257 2.3e-20 103.6 279 30.5
Oeu005388.3 Olea europaea HOM05D001925 ORTHO05D004257 2.3e-20 103.6 286 28.7
Thhalv10001583m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 3.0e-20 103.2 264 31.4
PGR042G2528 Punica granatum HOM05D001925 ORTHO05D004257 3.0e-20 103.2 310 27.4
TPR.G37799 Trifolium pratense HOM05D001925 ORTHO05D004257 3.0e-20 103.2 295 28.1
BcaB01g02169 Brassica carinata HOM05D001925 ORTHO05D004257 5.1e-20 102.4 262 30.5
Nitab4.5_0008206g0010 Nicotiana tabacum HOM05D001925 ORTHO05D004257 5.1e-20 102.4 280 30.7
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 6.7e-20 102.1 287 30.7
QL04p053608 Quercus lobata HOM05D001925 ORTHO05D004257 6.7e-20 102.1 277 30.0
Sopen10g006250 Solanum pennellii HOM05D001925 ORTHO05D004257 6.7e-20 102.1 271 32.1
PGSC0003DMG400006504 Solanum tuberosum HOM05D001925 ORTHO05D004257 6.7e-20 102.1 272 31.6
Rhsim07G0013800 Rhododendron simsii HOM05D001925 ORTHO05D004257 1.1e-19 101.3 284 29.2
TAR636G0324 Trochodendron aralioides HOM05D001925 ORTHO05D004257 1.1e-19 101.3 263 30.0
Peaxi162Scf00020g00730 Petunia axillaris HOM05D001925 ORTHO05D004257 1.5e-19 100.9 300 29.7
Nitab4.5_0006018g0030 Nicotiana tabacum HOM05D001925 ORTHO05D004257 1.9e-19 100.5 248 31.5
Phvul.008G061700 Phaseolus vulgaris HOM05D001925 ORTHO05D004257 1.9e-19 100.5 296 28.0
RcHm_v2.0_Chr1g0355951 Rosa chinensis HOM05D001925 ORTHO05D004257 1.9e-19 100.5 303 29.4
Sed0006621 Sechium edule HOM05D001925 ORTHO05D004257 1.9e-19 100.5 284 30.3
CAN.G116.9 Capsicum annuum HOM05D001925 ORTHO05D004257 2.5e-19 100.1 295 29.8
MBI18_g02843_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 2.5e-19 100.1 302 28.8
Solyc10g012420.3 Solanum lycopersicum HOM05D001925 ORTHO05D004257 2.5e-19 100.1 271 32.1
CARHR248450 Cardamine hirsuta HOM05D001925 ORTHO05D004257 4.3e-19 99.4 257 33.5
CiPaw.01G062900 Carya illinoinensis HOM05D001925 ORTHO05D004257 7.4e-19 98.6 261 30.7
Psat3g108000 Pisum sativum HOM05D001925 ORTHO05D004257 7.4e-19 98.6 273 28.9
Sp4g28050 Schrenkiella parvula HOM05D001925 ORTHO05D004257 7.4e-19 98.6 255 33.3
TWI59G0730 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 7.4e-19 98.6 279 29.7
Cpa.g.sc11.19 Carica papaya HOM05D001925 ORTHO05D004257 9.7e-19 98.2 279 31.9
Sed0020685 Sechium edule HOM05D001925 ORTHO05D004257 9.7e-19 98.2 278 29.9
VMungo1383G2450 Vigna mungo HOM05D001925 ORTHO05D004257 9.7e-19 98.2 294 27.6
GSVIVG01026948001 Vitis vinifera HOM05D001925 ORTHO05D004257 9.7e-19 98.2 239 32.2
AT4G00355 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 1.3e-18 97.8 255 33.3
Potri.002G160700 Populus trichocarpa HOM05D001925 ORTHO05D004257 1.3e-18 97.8 295 29.5
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.6e-18 97.4 313 29.4
TWI23G0808 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 1.6e-18 97.4 309 28.2
Rhsim01G0159000 Rhododendron simsii HOM05D001925 ORTHO05D004257 2.2e-18 97.1 253 29.2
Sabra14G0062300 Salix brachista HOM05D001925 ORTHO05D004257 2.2e-18 97.1 287 28.2
Nn1g01562 Nelumbo nucifera HOM05D001925 ORTHO05D004257 2.8e-18 96.7 296 29.4
Potri.014G086000 Populus trichocarpa HOM05D001925 ORTHO05D004257 3.7e-18 96.3 289 28.4
Sabra02G0127500 Salix brachista HOM05D001925 ORTHO05D004257 3.7e-18 96.3 287 30.3
TAR374G1741 Trochodendron aralioides HOM05D001925 ORTHO05D004257 3.7e-18 96.3 305 27.2
CANSAT21G1319 Cannabis sativa HOM05D001925 ORTHO05D004257 4.8e-18 95.9 301 28.6
Carub.0006s3688 Capsella rubella HOM05D001925 ORTHO05D004257 4.8e-18 95.9 264 31.1
Carub.0004s2868 Capsella rubella HOM05D001925 ORTHO05D004257 6.3e-18 95.5 257 30.0
FAN10G2559 Fragaria x ananassa HOM05D001925 ORTHO05D004257 8.2e-18 95.1 313 29.1
TAR629G3070 Trochodendron aralioides HOM05D001925 ORTHO05D004257 8.2e-18 95.1 304 28.6
arahy.Tifrunner.gnm1.ann1.IGP217 Arachis hypogaea HOM05D001925 ORTHO05D004257 1.1e-17 94.7 283 28.6
FvH4_7g14520 Fragaria vesca HOM05D001925 ORTHO05D004257 1.1e-17 94.7 313 29.1
FAN06G4809 Fragaria x ananassa HOM05D001925 ORTHO05D004257 1.1e-17 94.7 313 29.1
Lj1g0025308 Lotus japonicus HOM05D001925 ORTHO05D004257 1.1e-17 94.7 280 26.8
unitig_749.g13536 Utricularia gibba HOM05D001925 ORTHO05D004257 1.1e-17 94.7 264 31.8
Cc02_g38170 Coffea canephora HOM05D001925 ORTHO05D004257 1.4e-17 94.4 295 28.5
FAN10G1179 Fragaria x ananassa HOM05D001925 ORTHO05D004257 1.4e-17 94.4 313 29.1
arahy.Tifrunner.gnm1.ann1.E5DFEG Arachis hypogaea HOM05D001925 ORTHO05D004257 1.8e-17 94.0 283 28.6
Actinidia02837 Actinidia chinensis HOM05D001925 ORTHO05D004257 2.4e-17 93.6 306 27.8
Aa31LG1G27390 Aethionema arabicum HOM05D001925 ORTHO05D004257 2.4e-17 93.6 233 31.3
AL4G45210 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 2.4e-17 93.6 264 30.3
Prupe.2G172100 Prunus persica HOM05D001925 ORTHO05D004257 2.4e-17 93.6 300 29.3
FAN06G3089 Fragaria x ananassa HOM05D001925 ORTHO05D004257 5.3e-17 92.4 313 28.8
Lalb_Chr23g0275821 Lupinus albus HOM05D001925 ORTHO05D004257 5.3e-17 92.4 295 26.8
PSO017G3573 Papaver somniferum HOM05D001925 ORTHO05D004257 5.3e-17 92.4 260 30.8
Ah.05g180510 Amaranthus hybridus HOM05D001925 ORTHO05D004257 6.9e-17 92.0 275 28.0
Aqoxy7G00278 Aquilegia oxysepala HOM05D001925 ORTHO05D004257 6.9e-17 92.0 281 27.4
Eucgr.E00120 Eucalyptus grandis HOM05D001925 ORTHO05D004257 1.2e-16 91.3 266 28.6
MD01G1065100 Malus domestica HOM05D001925 ORTHO05D004257 1.2e-16 91.3 285 29.1
MD07G1135300 Malus domestica HOM05D001925 ORTHO05D004257 1.2e-16 91.3 281 30.6
A05p05970 Brassica napus HOM05D001925 ORTHO05D004257 2.6e-16 90.1 232 30.6
BraA05t19560Z Brassica rapa HOM05D001925 ORTHO05D004257 2.6e-16 90.1 232 30.6
PSO063G1799 Papaver somniferum HOM05D001925 ORTHO05D004257 2.6e-16 90.1 267 30.0
PGR031G2850 Punica granatum HOM05D001925 ORTHO05D004257 2.6e-16 90.1 280 27.9
DCAR_007445 Daucus carota HOM05D001925 ORTHO05D004257 3.4e-16 89.7 268 28.7
ECA236G3632 Erigeron canadensis HOM05D001925 ORTHO05D004257 4.5e-16 89.4 264 31.1
THA.LOC104817027 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 4.5e-16 89.4 245 30.2
CARHR141250 Cardamine hirsuta HOM05D001925 ORTHO05D004257 5.9e-16 89.0 258 29.8
FAN03G0610 Fragaria x ananassa HOM05D001925 ORTHO05D004257 7.7e-16 88.6 313 28.4
Peaxi162Scf00008g02423 Petunia axillaris HOM05D001925 ORTHO05D004257 7.7e-16 88.6 250 28.0
THA.LOC104817300 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 7.7e-16 88.6 281 27.4
AT2G45980 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 1.0e-15 88.2 242 30.6
Nn6g33385 Nelumbo nucifera HOM05D001925 ORTHO05D004257 1.0e-15 88.2 294 25.9
PSO782G1204 Papaver somniferum HOM05D001925 ORTHO05D004257 2.2e-15 87.0 245 29.0
C04p06900 Brassica napus HOM05D001925 ORTHO05D004257 3.8e-15 86.3 232 30.2
BolC4t22311H Brassica oleracea HOM05D001925 ORTHO05D004257 3.8e-15 86.3 232 30.2
Eucgr.D02304 Eucalyptus grandis HOM05D001925 ORTHO05D004257 6.5e-15 85.5 290 29.3
PSO478G2649 Papaver somniferum HOM05D001925 ORTHO05D004257 8.5e-15 85.1 243 31.3
SGA_v2.0_scaffold55G19707 Striga asiatica HOM05D001925 ORTHO05D004257 8.5e-15 85.1 220 30.5
BcaC01g06884 Brassica carinata HOM05D001925 ORTHO05D004257 1.9e-14 84.0 262 28.2
THA.LOC104802035 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 4.2e-14 82.8 245 28.6
C04p71970 Brassica napus HOM05D001925 ORTHO05D004257 9.4e-14 81.6 231 31.2
CiPaw.02G032000 Carya illinoinensis HOM05D001925 ORTHO05D004257 9.4e-14 81.6 281 25.3
CDE08G0634 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 2.7e-13 80.1 311 26.4
C03p39260 Brassica napus HOM05D001925 ORTHO05D004257 3.6e-13 79.7 262 27.5
Medtr2g027720 Medicago truncatula HOM05D001925 ORTHO05D004257 1.4e-12 77.8 234 27.8
A03p32220 Brassica napus HOM05D001925 ORTHO05D004257 1.8e-12 77.4 254 27.6
BraA03t12392Z Brassica rapa HOM05D001925 ORTHO05D004257 1.8e-12 77.4 254 27.6
BolC3t16197H Brassica oleracea HOM05D001925 ORTHO05D004257 2.3e-12 77.0 262 27.9
HanXRQChr13g0426611 Helianthus annuus HOM05D001925 ORTHO05D004257 3.0e-12 76.6 215 30.7
A04p34180 Brassica napus HOM05D001925 ORTHO05D004257 6.7e-12 75.5 245 31.4
BraA04t18879Z Brassica rapa HOM05D001925 ORTHO05D004257 6.7e-12 75.5 245 31.4
CDE05G2831 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 1.1e-11 74.7 124 30.6
ATR0680G064 Amborella trichopoda HOM05D001925 ORTHO05D004257 1.5e-11 74.3 305 28.2
arahy.Tifrunner.gnm1.ann1.2X3TQS Arachis hypogaea HOM05D001925 ORTHO05D004257 2.5e-11 73.6 259 28.2
HPP92_025783 Vanilla planifolia HOM05D001925 ORTHO05D004257 4.3e-11 72.8 250 28.8
Zm00001eb318800 Zea mays HOM05D001925 ORTHO05D004257 1.7e-10 70.9 245 29.8
BolC4t28695H Brassica oleracea HOM05D001925 ORTHO05D004257 4.8e-10 69.3 233 30.0
Lj6A572T61 Lonicera japonica HOM05D001925 ORTHO05D004257 4.8e-10 69.3 107 34.6
Hund27265 Selenicereus undatus HOM05D001925 ORTHO05D004257 4.8e-10 69.3 228 25.4
Zm00001eb103050 Zea mays HOM05D001925 ORTHO05D004257 1.1e-09 68.2 238 29.4
Os04g0165300 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 1.8e-09 67.4 245 26.9
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 3.1e-09 66.6 146 32.2
Zm00001eb191080 Zea mays HOM05D001925 ORTHO05D004257 4.1e-09 66.2 268 25.4
Os02g0821900 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 5.3e-09 65.9 252 22.2
Lsat_1_v5_gn_7_4301 Lactuca sativa HOM05D001925 ORTHO05D004257 6.9e-09 65.5 231 28.6
AUR62004372 Chenopodium quinoa HOM05D001925 ORTHO05D004257 9.1e-09 65.1 214 25.7
AUR62022581 Chenopodium quinoa HOM05D001925 ORTHO05D004257 9.1e-09 65.1 241 27.4
DCAR_025195 Daucus carota HOM05D001925 ORTHO05D004257 9.1e-09 65.1 259 26.3
EL10Ac1g00401 Beta vulgaris HOM05D001925 ORTHO05D004257 1.2e-08 64.7 251 25.1
Lalb_Chr11g0072911 Lupinus albus HOM05D001925 ORTHO05D004257 5.9e-08 62.4 156 29.5
HPP92_014720 Vanilla planifolia HOM05D001925 ORTHO05D004257 1.3e-07 61.2 272 25.0
MBI17_g35262_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 1.9e-06 57.4 73 39.7
MBI17_g42624_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 2.5e-06 57.0 124 29.8
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 3.2e-06 56.6 44 47.7
Zm00001eb305930 Zea mays HOM05D001925 ORTHO05D004257 3.2e-06 56.6 224 25.0
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 5.5e-06 55.8 279 25.4


User provided reference genes

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