Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G02289 Striga asiatica HOM05D003611 ORTHO05D004281 7.8e-311 1069.7 568 100.0
SalBow3G4181 Salvia bowleyana HOM05D003611 ORTHO05D004281 6.0e-154 548.5 535 60.7
Migut.B01791 Erythranthe guttata HOM05D003611 ORTHO05D004281 6.6e-153 545.0 534 59.4
MSTRG.20858 Avicennia marina HOM05D003611 ORTHO05D004281 4.2e-147 525.8 543 57.5
MSTRG.4840 Avicennia marina HOM05D003611 ORTHO05D004281 2.4e-139 500.0 533 56.7
Dinv32512 Davidia involucrata HOM05D003611 ORTHO05D004281 4.3e-120 436.0 537 52.5
Dinv43856 Davidia involucrata HOM05D003611 ORTHO05D004281 2.9e-116 423.3 539 51.6
Oeu018963.2 Olea europaea HOM05D003611 ORTHO05D004281 1.4e-115 421.0 640 45.0
Ciclev10018621m.g Citrus clementina HOM05D003611 ORTHO05D004281 3.6e-114 416.4 548 49.6
GSVIVG01026955001 Vitis vinifera HOM05D003611 ORTHO05D004281 1.0e-113 414.8 545 48.6
Thecc.01G353800 Theobroma cacao HOM05D003611 ORTHO05D004281 6.9e-110 402.1 545 48.6
Cfa003881 Carpinus fangiana HOM05D003611 ORTHO05D004281 7.7e-109 398.7 538 48.7
Gohir.D11G096300 Gossypium hirsutum HOM05D003611 ORTHO05D004281 8.5e-108 395.2 548 48.5
Nitab4.5_0010703g0040 Nicotiana tabacum HOM05D003611 ORTHO05D004281 1.4e-107 394.4 552 46.9
Gorai.007G102600 Gossypium raimondii HOM05D003611 ORTHO05D004281 3.2e-107 393.3 548 48.4
Potri.014G089200 Populus trichocarpa HOM05D003611 ORTHO05D004281 1.2e-106 391.3 536 49.4
CiPaw.01G065700 Carya illinoinensis HOM05D003611 ORTHO05D004281 1.6e-106 391.0 546 46.5
Sabra02G0147500 Salix brachista HOM05D003611 ORTHO05D004281 4.7e-106 389.4 539 47.7
Cc02_g38450 Coffea canephora HOM05D003611 ORTHO05D004281 3.0e-105 386.7 536 50.2
Haze_15553 Corylus avellana HOM05D003611 ORTHO05D004281 3.9e-105 386.3 559 46.5
Prupe.2G176000 Prunus persica HOM05D003611 ORTHO05D004281 3.9e-105 386.3 548 48.2
Sopen01g038800 Solanum pennellii HOM05D003611 ORTHO05D004281 3.9e-105 386.3 567 45.5
Potri.002G163000 Populus trichocarpa HOM05D003611 ORTHO05D004281 2.6e-104 383.6 540 48.5
Nitab4.5_0000915g0210 Nicotiana tabacum HOM05D003611 ORTHO05D004281 3.3e-104 383.3 553 45.0
Solyc01g095020.3 Solanum lycopersicum HOM05D003611 ORTHO05D004281 4.4e-104 382.9 567 45.3
Actinidia10062 Actinidia chinensis HOM05D003611 ORTHO05D004281 5.7e-104 382.5 536 45.1
Sopen10g005780 Solanum pennellii HOM05D003611 ORTHO05D004281 9.7e-104 381.7 542 45.6
Gohir.A11G091600 Gossypium hirsutum HOM05D003611 ORTHO05D004281 1.3e-103 381.3 549 48.5
Solyc10g012030.4 Solanum lycopersicum HOM05D003611 ORTHO05D004281 1.3e-103 381.3 537 45.6
Gohir.D11G096500 Gossypium hirsutum HOM05D003611 ORTHO05D004281 1.1e-102 378.3 549 46.3
Peaxi162Scf00020g01228 Petunia axillaris HOM05D003611 ORTHO05D004281 1.4e-102 377.9 555 45.6
Atru.chr5.552 Acer truncatum HOM05D003611 ORTHO05D004281 3.1e-102 376.7 533 46.3
Gorai.007G102800 Gossypium raimondii HOM05D003611 ORTHO05D004281 5.3e-102 375.9 551 46.3
Gohir.A11G091700 Gossypium hirsutum HOM05D003611 ORTHO05D004281 3.5e-101 373.2 542 46.9
QL04p055101 Quercus lobata HOM05D003611 ORTHO05D004281 4.5e-101 372.9 553 44.5
CiPaw.02G033900 Carya illinoinensis HOM05D003611 ORTHO05D004281 5.9e-101 372.5 534 45.5
Glyma.18G237600 Glycine max HOM05D003611 ORTHO05D004281 5.9e-101 372.5 537 46.6
Duzib138G0252 Durio zibethinus HOM05D003611 ORTHO05D004281 7.7e-101 372.1 568 46.1
Glyma.09G255400 Glycine max HOM05D003611 ORTHO05D004281 1.3e-100 371.3 536 46.3
PGR042G1491 Punica granatum HOM05D003611 ORTHO05D004281 1.3e-100 371.3 544 44.1
COL.COLO4_12765 Corchorus olitorius HOM05D003611 ORTHO05D004281 2.2e-100 370.5 538 47.2
Actinidia20152 Actinidia chinensis HOM05D003611 ORTHO05D004281 3.8e-100 369.8 534 43.3
VMungo1383G2804 Vigna mungo HOM05D003611 ORTHO05D004281 8.5e-100 368.6 533 46.5
Medtr7g078820 Medicago truncatula HOM05D003611 ORTHO05D004281 1.1e-99 368.2 537 46.4
CSS0038908 Camellia sinensis var. sinensis HOM05D003611 ORTHO05D004281 1.4e-99 367.9 536 47.6
Sabra14G0064800 Salix brachista HOM05D003611 ORTHO05D004281 3.2e-99 366.7 537 47.5
Lj7A508G38 Lonicera japonica HOM05D003611 ORTHO05D004281 1.5e-96 357.8 538 45.5
RcHm_v2.0_Chr1g0357311 Rosa chinensis HOM05D003611 ORTHO05D004281 2.0e-96 357.5 537 46.7
TWI14G0836 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 2.0e-96 357.5 534 47.4
Psat3g107120 Pisum sativum HOM05D003611 ORTHO05D004281 1.7e-95 354.4 536 47.4
Manes.05G030300 Manihot esculenta HOM05D003611 ORTHO05D004281 1.1e-94 351.7 549 46.3
FvH4_7g15120 Fragaria vesca HOM05D003611 ORTHO05D004281 1.8e-94 350.9 548 45.8
Duzib133G0517 Durio zibethinus HOM05D003611 ORTHO05D004281 5.3e-94 349.4 540 44.4
FAN10G4104 Fragaria x ananassa HOM05D003611 ORTHO05D004281 2.6e-93 347.1 560 45.4
MD07G1132600 Malus domestica HOM05D003611 ORTHO05D004281 3.5e-93 346.7 538 46.8
CSS0009973 Camellia sinensis var. sinensis HOM05D003611 ORTHO05D004281 7.7e-93 345.5 535 45.6
FAN10G1370 Fragaria x ananassa HOM05D003611 ORTHO05D004281 1.3e-92 344.7 560 45.2
TPR.G22300 Trifolium pratense HOM05D003611 ORTHO05D004281 1.3e-92 344.7 538 46.1
FAN03G1353 Fragaria x ananassa HOM05D003611 ORTHO05D004281 1.7e-92 344.4 552 45.1
Cpa.g.sc184.26 Carica papaya HOM05D003611 ORTHO05D004281 2.2e-92 344.0 568 42.3
FAN06G4234 Fragaria x ananassa HOM05D003611 ORTHO05D004281 2.9e-92 343.6 548 45.6
Lj1g0014988 Lotus japonicus HOM05D003611 ORTHO05D004281 5.0e-92 342.8 533 46.5
Ca_00818_v3 Cicer arietinum L. HOM05D003611 ORTHO05D004281 8.5e-92 342.0 534 46.4
FAN01G0094 Fragaria x ananassa HOM05D003611 ORTHO05D004281 1.1e-91 341.7 548 45.6
Eucgr.E00101 Eucalyptus grandis HOM05D003611 ORTHO05D004281 2.5e-91 340.5 543 43.8
Nn1g01656 Nelumbo nucifera HOM05D003611 ORTHO05D004281 9.4e-91 338.6 564 43.1
arahy.Tifrunner.gnm1.ann1.I9FVBP Arachis hypogaea HOM05D003611 ORTHO05D004281 1.2e-90 338.2 541 45.7
Peaxi162Scf00585g00319 Petunia axillaris HOM05D003611 ORTHO05D004281 2.7e-90 337.0 544 43.9
FAN06G0771 Fragaria x ananassa HOM05D003611 ORTHO05D004281 4.7e-90 336.3 549 45.0
MD01G1069900 Malus domestica HOM05D003611 ORTHO05D004281 1.8e-89 334.3 558 44.3
Lalb_Chr17g0339111 Lupinus albus HOM05D003611 ORTHO05D004281 2.3e-89 334.0 546 43.4
TAR375G0370 Trochodendron aralioides HOM05D003611 ORTHO05D004281 1.5e-88 331.3 492 44.5
Phvul.008G059100 Phaseolus vulgaris HOM05D003611 ORTHO05D004281 5.7e-88 329.3 532 45.7
CANSAT56G4470 Cannabis sativa HOM05D003611 ORTHO05D004281 4.8e-87 326.2 536 44.2
MELO3C006087.2 Cucumis melo HOM05D003611 ORTHO05D004281 6.3e-87 325.9 568 41.4
ClCG05G001310 Citrullus lanatus HOM05D003611 ORTHO05D004281 1.6e-85 321.2 563 40.5
Rhsim07G0011300 Rhododendron simsii HOM05D003611 ORTHO05D004281 1.0e-84 318.5 577 41.8
Actinidia18539 Actinidia chinensis HOM05D003611 ORTHO05D004281 2.2e-84 317.4 540 45.0
Lsat_1_v5_gn_4_35681 Lactuca sativa HOM05D003611 ORTHO05D004281 6.5e-84 315.8 539 42.7
Lalb_Chr10g0096711 Lupinus albus HOM05D003611 ORTHO05D004281 3.2e-83 313.5 535 42.6
Hund16671 Selenicereus undatus HOM05D003611 ORTHO05D004281 4.2e-83 313.2 535 42.2
Sc23g0002620 Simmondsia chinensis HOM05D003611 ORTHO05D004281 7.2e-83 312.4 540 41.9
HanXRQChr17g0562341 Helianthus annuus HOM05D003611 ORTHO05D004281 9.4e-83 312.0 532 42.3
MBI11_g13553_MAGBIO Magnolia biondii HOM05D003611 ORTHO05D004281 9.4e-83 312.0 572 39.2
CsaV3_3G008680 Cucumis sativus L. HOM05D003611 ORTHO05D004281 1.6e-82 311.2 577 38.8
AUR62004403 Chenopodium quinoa HOM05D003611 ORTHO05D004281 2.1e-82 310.8 533 42.6
Aqoxy7G00231 Aquilegia oxysepala HOM05D003611 ORTHO05D004281 4.0e-81 306.6 517 43.3
Oeu015220.3 Olea europaea HOM05D003611 ORTHO05D004281 5.2e-81 306.2 408 47.3
EL10Ac1g00365 Beta vulgaris HOM05D003611 ORTHO05D004281 6.8e-81 305.8 540 42.2
Nitab4.5_0000690g0050 Nicotiana tabacum HOM05D003611 ORTHO05D004281 6.8e-81 305.8 489 43.1
Lalb_Chr04g0259241 Lupinus albus HOM05D003611 ORTHO05D004281 8.8e-81 305.4 538 43.7
arahy.Tifrunner.gnm1.ann1.9C73IW Arachis hypogaea HOM05D003611 ORTHO05D004281 7.5e-80 302.4 370 54.1
Hund27250 Selenicereus undatus HOM05D003611 ORTHO05D004281 9.8e-80 302.0 515 43.3
AUR62022609 Chenopodium quinoa HOM05D003611 ORTHO05D004281 1.7e-79 301.2 555 41.6
DCAR_008631 Daucus carota HOM05D003611 ORTHO05D004281 3.7e-79 300.1 454 45.6
Nitab4.5_0000200g0170 Nicotiana tabacum HOM05D003611 ORTHO05D004281 3.7e-79 300.1 491 42.6
Manes.01G253100 Manihot esculenta HOM05D003611 ORTHO05D004281 6.3e-79 299.3 354 52.8
DCAR_006945 Daucus carota HOM05D003611 ORTHO05D004281 8.3e-79 298.9 533 43.3
TWI59G0398 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 1.1e-78 298.5 428 47.9
THA.LOC104825859 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 1.8e-78 297.7 544 40.3
ECA234G2210 Erigeron canadensis HOM05D003611 ORTHO05D004281 9.1e-78 295.4 548 39.8
Sed0010511 Sechium edule HOM05D003611 ORTHO05D004281 2.0e-77 294.3 548 40.5
PSO478G2290 Papaver somniferum HOM05D003611 ORTHO05D004281 1.7e-76 291.2 545 38.7
AL6G52100 Arabidopsis lyrata HOM05D003611 ORTHO05D004281 9.5e-75 285.4 541 40.9
Sed0009698 Sechium edule HOM05D003611 ORTHO05D004281 1.2e-74 285.0 548 39.1
Sp6g00840 Schrenkiella parvula HOM05D003611 ORTHO05D004281 2.1e-74 284.3 528 39.2
TWI23G0144 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 2.1e-74 284.3 334 53.0
Carub.0006s3636 Capsella rubella HOM05D003611 ORTHO05D004281 2.8e-74 283.9 544 40.3
THA.LOC104801395 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 1.4e-73 281.6 542 40.2
PSO782G0890 Papaver somniferum HOM05D003611 ORTHO05D004281 3.0e-73 280.4 546 37.9
vmacro13239 Vaccinium macrocarpon HOM05D003611 ORTHO05D004281 2.0e-72 277.7 624 36.9
THA.LOC104817035 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 2.4e-70 270.8 556 38.8
Thhalv10028394m.g Eutrema salsugineum HOM05D003611 ORTHO05D004281 4.1e-70 270.0 539 38.0
CARHR249020 Cardamine hirsuta HOM05D003611 ORTHO05D004281 7.0e-70 269.2 534 40.3
BcaC01g06854 Brassica carinata HOM05D003611 ORTHO05D004281 1.2e-69 268.5 583 36.4
Aa31LG5G730 Aethionema arabicum HOM05D003611 ORTHO05D004281 1.6e-69 268.1 563 36.9
Lalb_Chr17g0339131 Lupinus albus HOM05D003611 ORTHO05D004281 1.7e-68 264.6 328 51.8
BolC3t16170H Brassica oleracea HOM05D003611 ORTHO05D004281 2.3e-68 264.2 549 37.9
A03p31960 Brassica napus HOM05D003611 ORTHO05D004281 1.5e-67 261.5 540 39.4
BraA03t12368Z Brassica rapa HOM05D003611 ORTHO05D004281 3.3e-67 260.4 540 39.3
C03p38980 Brassica napus HOM05D003611 ORTHO05D004281 9.5e-67 258.8 583 35.8
AT4G01290 Arabidopsis thaliana HOM05D003611 ORTHO05D004281 1.6e-66 258.1 542 39.9
Ah.05g180220 Amaranthus hybridus HOM05D003611 ORTHO05D004281 3.1e-65 253.8 384 45.6
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 5.2e-65 253.1 541 37.3
BcaB01g02151 Brassica carinata HOM05D003611 ORTHO05D004281 2.6e-64 250.8 520 38.8
BcaB01g02283 Brassica carinata HOM05D003611 ORTHO05D004281 9.8e-64 248.8 541 38.6
Sc01g0003270 Simmondsia chinensis HOM05D003611 ORTHO05D004281 6.4e-63 246.1 444 41.7
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 1.9e-62 244.6 542 38.2
BcaC04g24140 Brassica carinata HOM05D003611 ORTHO05D004281 4.1e-62 243.4 582 37.5
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 4.1e-62 243.4 582 37.5
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 4.1e-62 243.4 582 37.5
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 1.2e-61 241.9 516 36.0
BcaB05g23959 Brassica carinata HOM05D003611 ORTHO05D004281 1.2e-61 241.9 542 36.3
CDE11G0274 Ceratophyllum demersum HOM05D003611 ORTHO05D004281 2.6e-56 224.2 565 34.7
Lalb_Chr04g0259211 Lupinus albus HOM05D003611 ORTHO05D004281 5.8e-56 223.0 231 56.3
CDE09G0589 Ceratophyllum demersum HOM05D003611 ORTHO05D004281 1.9e-54 218.0 554 33.4
HPP92_002731 Vanilla planifolia HOM05D003611 ORTHO05D004281 2.4e-54 217.6 540 37.2
unitig_8.g3336 Utricularia gibba HOM05D003611 ORTHO05D004281 3.9e-52 210.3 548 36.1
Zm00001eb374330 Zea mays HOM05D003611 ORTHO05D004281 5.2e-49 199.9 523 34.6
ATR0661G469 Amborella trichopoda HOM05D003611 ORTHO05D004281 8.9e-49 199.1 509 34.6
Hma1.2p1_0623F.1_g191000 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 8.6e-44 182.6 191 55.0
Os06g0105900 Oryza sativa ssp. japonica HOM05D003611 ORTHO05D004281 5.2e-41 173.3 527 33.8
GSVIVG01028853001 Vitis vinifera HOM05D003611 ORTHO05D004281 1.1e-33 149.1 509 30.1
Dinv35257 Davidia involucrata HOM05D003611 ORTHO05D004281 3.4e-32 144.1 341 38.7
Cfa016292 Carpinus fangiana HOM05D003611 ORTHO05D004281 1.6e-29 135.2 418 32.1
unitig_22.g6726 Utricularia gibba HOM05D003611 ORTHO05D004281 2.7e-29 134.4 193 50.3
QL09p012690 Quercus lobata HOM05D003611 ORTHO05D004281 4.6e-29 133.7 517 28.4
Hma1.2p1_0627F.1_g191700 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 3.6e-26 124.0 290 34.5
Haze_00050 Corylus avellana HOM05D003611 ORTHO05D004281 2.4e-22 111.3 207 38.6
Atru.chr1.351 Acer truncatum HOM05D003611 ORTHO05D004281 5.4e-22 110.2 281 34.2
Oeu054339.1 Olea europaea HOM05D003611 ORTHO05D004281 6.2e-18 96.7 159 43.4
TAR374G1053 Trochodendron aralioides HOM05D003611 ORTHO05D004281 1.1e-17 95.9 304 31.2
Thecc.03G184800 Theobroma cacao HOM05D003611 ORTHO05D011897 5.3e-17 93.6 295 31.5
Duzib205G1157 Durio zibethinus HOM05D003611 ORTHO05D011897 5.8e-16 90.1 285 31.9
Hma1.2p1_2961F.1_g330880 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 1.3e-15 89.0 275 34.2
Pp3c19_15630 Physcomitrium patens HOM05D025697 ORTHO05D004281 1.4e-14 85.5 444 26.4
TWI23G0357 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 3.2e-14 84.3 340 28.8
SEGI_14695 Sequoiadendron giganteum HOM05D003611 ORTHO05D004281 4.6e-13 80.5 389 29.3
Rhsim03G0191400 Rhododendron simsii HOM05D003611 ORTHO05D038142 1.3e-12 79.0 239 33.5
Gohir.A11G012500 Gossypium hirsutum HOM05D003611 ORTHO05D011897 2.3e-12 78.2 592 26.4
Actinidia02823 Actinidia chinensis HOM05D003611 ORTHO05D004281 3.9e-12 77.4 79 54.4
Mapoly0012s0024 Marchantia polymorpha HOM05D003611 ORTHO05D021332 3.9e-12 77.4 669 23.3
Prupe.2G301400 Prunus persica HOM05D010729 ORTHO05D011897 3.9e-12 77.4 376 28.7
Gorai.007G013100 Gossypium raimondii HOM05D003611 ORTHO05D011897 1.1e-11 75.9 569 26.0
Gohir.D11G011700 Gossypium hirsutum HOM05D003611 ORTHO05D011897 1.5e-11 75.5 604 26.5
Pp3c18_8750 Physcomitrium patens HOM05D025697 ORTHO05D004281 5.7e-11 73.6 456 26.1
Hund11716 Selenicereus undatus HOM05D003611 ORTHO05D026482 2.1e-10 71.6 345 26.7
AUR62021117 Chenopodium quinoa HOM05D034504 ORTHO05D026482 3.7e-10 70.9 209 31.6
AUR62031425 Chenopodium quinoa HOM05D034504 ORTHO05D026482 4.1e-09 67.4 218 30.3
BcaC03g16054 Brassica carinata HOM05D003611 ORTHO05D004281 2.6e-08 64.7 73 50.7
Ciclev10006595m.g Citrus clementina HOM05D003611 ORTHO05D004281 5.8e-08 63.5 303 26.4
Lalb_Chr04g0259231 Lupinus albus HOM05D003611 ORTHO05D004281 1.1e-06 59.3 101 41.6
MD01G1208800 Malus domestica HOM05D010729 ORTHO05D011897 1.4e-06 58.9 326 27.0
Ah.07g206550 Amaranthus hybridus HOM05D034504 ORTHO05D026482 4.2e-06 57.4 268 27.6
Potri.004G073400 Populus trichocarpa HOM05D003611 ORTHO05D004281 4.2e-06 57.4 301 30.9


User provided reference genes

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