Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G02283 Striga asiatica HOM05D003900 ORTHO05D005009 8.3e-212 741.1 744 100.0
Migut.B01798 Erythranthe guttata HOM05D003900 ORTHO05D005009 3.0e-113 413.7 356 59.6
SalBow3G3666 Salvia bowleyana HOM05D003900 ORTHO05D005009 6.5e-108 396.0 353 55.5
Cc02_g38560 Coffea canephora HOM05D003900 ORTHO05D005009 1.8e-86 324.7 370 48.6
Dinv43863 Davidia involucrata HOM05D003900 ORTHO05D005009 2.5e-83 314.3 345 46.7
Nitab4.5_0010695g0010 Nicotiana tabacum HOM05D003900 ORTHO05D005009 3.5e-77 293.9 352 45.2
Lj7C507T1 Lonicera japonica HOM05D003900 ORTHO05D005009 5.9e-77 293.1 344 43.0
Nitab4.5_0000915g0110 Nicotiana tabacum HOM05D003900 ORTHO05D005009 7.8e-77 292.7 352 45.5
Solyc01g095110.4 Solanum lycopersicum HOM05D003900 ORTHO05D005009 1.2e-74 285.4 348 43.4
Sopen01g038900 Solanum pennellii HOM05D003900 ORTHO05D005009 1.4e-73 282.0 348 43.1
PGSC0003DMG400000195 Solanum tuberosum HOM05D003900 ORTHO05D005009 6.8e-73 279.6 349 41.5
Peaxi162Scf00020g00155 Petunia axillaris HOM05D003900 ORTHO05D005009 1.2e-72 278.9 346 42.8
QL04p055515 Quercus lobata HOM05D003900 ORTHO05D005009 2.6e-72 277.7 350 45.1
CAN.G78.130 Capsicum annuum HOM05D003900 ORTHO05D005009 7.5e-72 276.2 351 43.0
Rhsim07G0010500 Rhododendron simsii HOM05D003900 ORTHO05D005009 1.3e-71 275.4 355 42.0
Atru.chr5.581 Acer truncatum HOM05D003900 ORTHO05D005009 6.4e-71 273.1 355 42.8
Atru.chr5.563 Acer truncatum HOM05D003900 ORTHO05D005009 8.3e-71 272.7 353 42.8
CSS0000093 Camellia sinensis var. sinensis HOM05D003900 ORTHO05D005009 1.1e-70 272.3 317 45.1
CSS0016355 Camellia sinensis var. sinensis HOM05D003900 ORTHO05D005009 1.1e-70 272.3 317 45.1
MD07G1131300 Malus domestica HOM05D003900 ORTHO05D005009 3.9e-68 263.8 331 42.9
CANSAT56G3111 Cannabis sativa HOM05D003900 ORTHO05D005009 2.5e-67 261.2 345 42.9
CiPaw.01G067500 Carya illinoinensis HOM05D003900 ORTHO05D005009 2.5e-67 261.2 335 43.0
GSVIVG01026966001 Vitis vinifera HOM05D003900 ORTHO05D005009 1.2e-66 258.8 350 42.9
CiPaw.01G066800 Carya illinoinensis HOM05D003900 ORTHO05D005009 6.2e-66 256.5 343 42.0
vmacro13229 Vaccinium macrocarpon HOM05D003900 ORTHO05D005009 8.1e-66 256.1 347 40.6
RcHm_v2.0_Chr7g0228211 Rosa chinensis HOM05D003900 ORTHO05D005009 1.1e-65 255.8 348 43.4
Manes.01G252300 Manihot esculenta HOM05D003900 ORTHO05D005009 8.9e-65 252.7 341 41.9
CiPaw.01G067100 Carya illinoinensis HOM05D003900 ORTHO05D005009 1.2e-64 252.3 338 42.3
CiPaw.01G067200 Carya illinoinensis HOM05D003900 ORTHO05D005009 4.4e-64 250.4 344 41.3
Sc01g0003220 Simmondsia chinensis HOM05D003900 ORTHO05D005009 5.8e-64 250.0 350 40.9
CiPaw.01G067300 Carya illinoinensis HOM05D003900 ORTHO05D005009 7.5e-64 249.6 342 42.4
Manes.05G029400 Manihot esculenta HOM05D003900 ORTHO05D005009 2.2e-63 248.1 344 44.8
Haze_15564 Corylus avellana HOM05D003900 ORTHO05D005009 3.7e-63 247.3 340 41.8
CiPaw.01G067400 Carya illinoinensis HOM05D003900 ORTHO05D005009 4.9e-63 246.9 342 40.6
CiPaw.01G066600 Carya illinoinensis HOM05D003900 ORTHO05D005009 5.4e-62 243.4 308 43.5
TWI23G0979 Tripterygium wilfordii HOM05D003900 ORTHO05D005009 5.4e-62 243.4 317 42.6
Gorai.008G119500 Gossypium raimondii HOM05D003900 ORTHO05D005009 9.2e-62 242.7 343 41.1
TAR629G0263 Trochodendron aralioides HOM05D003900 ORTHO05D005009 1.2e-61 242.3 346 41.3
RcHm_v2.0_Chr1g0357681 Rosa chinensis HOM05D003900 ORTHO05D005009 1.6e-61 241.9 340 41.8
Thecc.01G352500 Theobroma cacao HOM05D003900 ORTHO05D005009 4.6e-61 240.4 339 41.0
Gohir.D12G110200 Gossypium hirsutum HOM05D003900 ORTHO05D005009 6.0e-61 240.0 343 40.2
Gohir.A12G106900 Gossypium hirsutum HOM05D003900 ORTHO05D005009 7.8e-61 239.6 343 40.5
HanXRQChr04g0120801 Helianthus annuus HOM05D003900 ORTHO05D005009 1.7e-60 238.4 355 38.6
Oeu015216.1 Olea europaea HOM05D003900 ORTHO05D005009 1.7e-60 238.4 237 59.5
Prupe.2G177500 Prunus persica HOM05D003900 ORTHO05D005009 2.5e-59 234.6 344 40.4
Duzib138G1643 Durio zibethinus HOM05D003900 ORTHO05D005009 3.3e-59 234.2 357 38.1
Ah.15g096610 Amaranthus hybridus HOM05D003900 ORTHO05D005009 1.2e-58 232.3 353 40.8
Sabra14G0065500 Salix brachista HOM05D003900 ORTHO05D005009 3.6e-58 230.7 352 38.1
EL10Ac1g00355 Beta vulgaris HOM05D003900 ORTHO05D005009 4.7e-58 230.3 321 39.3
Lsat_1_v5_gn_7_2720 Lactuca sativa HOM05D003900 ORTHO05D005009 6.2e-58 229.9 353 37.7
Potri.014G090400 Populus trichocarpa HOM05D003900 ORTHO05D005009 1.1e-57 229.2 343 38.8
AUR62004412 Chenopodium quinoa HOM05D003900 ORTHO05D005009 7.6e-56 223.0 360 36.4
FAN04G0755 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.7e-55 221.9 339 38.6
MD01G1071400 Malus domestica HOM05D003900 ORTHO05D005009 1.7e-55 221.9 220 47.7
Lj4g0005982 Lotus japonicus HOM05D003900 ORTHO05D005009 2.9e-55 221.1 314 40.1
FvH4_5g32150 Fragaria vesca HOM05D003900 ORTHO05D005009 3.7e-55 220.7 327 39.4
FvH4_5g03011 Fragaria vesca HOM05D003900 ORTHO05D005009 3.2e-54 217.6 339 38.3
FvH4_7g15360 Fragaria vesca HOM05D003900 ORTHO05D005009 3.2e-54 217.6 274 42.3
PGR142G0969 Punica granatum HOM05D003900 ORTHO05D005009 4.1e-54 217.2 349 37.0
THA.LOC104817316 Tarenaya hassleriana HOM05D003900 ORTHO05D005009 4.1e-54 217.2 343 37.6
MBI11_g19575_MAGBIO Magnolia biondii HOM05D003900 ORTHO05D005009 7.1e-54 216.5 350 39.4
CARHR171850 Cardamine hirsuta HOM05D003900 ORTHO05D005009 1.2e-53 215.7 341 38.4
FAN03G2211 Fragaria x ananassa HOM05D003900 ORTHO05D005009 2.1e-53 214.9 331 37.8
BcaB02g07375 Brassica carinata HOM05D003900 ORTHO05D005009 3.5e-53 214.2 340 38.5
AT3G61520 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 4.6e-53 213.8 341 38.1
BcaC08g45129 Brassica carinata HOM05D003900 ORTHO05D005009 4.6e-53 213.8 340 38.8
FAN10G3614 Fragaria x ananassa HOM05D003900 ORTHO05D005009 7.8e-53 213.0 307 39.4
AT5G28370 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 3.9e-52 210.7 341 37.8
AT5G28460 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 3.9e-52 210.7 341 37.8
Nn1g01685 Nelumbo nucifera HOM05D003900 ORTHO05D005009 5.1e-52 210.3 287 37.3
C06p27530 Brassica napus HOM05D003900 ORTHO05D005009 6.6e-52 209.9 340 38.2
BolC6t37920H Brassica oleracea HOM05D003900 ORTHO05D005009 8.6e-52 209.5 340 37.9
Carub.0005s2821 Capsella rubella HOM05D003900 ORTHO05D005009 1.1e-51 209.1 341 38.1
AUR62022618 Chenopodium quinoa HOM05D003900 ORTHO05D005009 1.9e-51 208.4 322 37.6
A07p25540 Brassica napus HOM05D003900 ORTHO05D005009 3.3e-51 207.6 340 38.2
DCAR_025213 Daucus carota HOM05D003900 ORTHO05D005009 4.3e-51 207.2 354 37.3
AL5G43880 Arabidopsis lyrata HOM05D003900 ORTHO05D005009 2.8e-50 204.5 341 37.5
Sp4g28170 Schrenkiella parvula HOM05D003900 ORTHO05D005009 2.8e-50 204.5 342 37.1
Thhalv10022571m.g Eutrema salsugineum HOM05D003900 ORTHO05D005009 6.2e-50 203.4 341 36.7
VMungo0251G1173 Vigna mungo HOM05D003900 ORTHO05D005009 6.2e-50 203.4 344 36.0
COL.COLO4_12777 Corchorus olitorius HOM05D003900 ORTHO05D005009 1.1e-49 202.6 276 40.6
FAN06G2614 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.4e-49 202.2 268 41.0
BraA07t30195Z Brassica rapa HOM05D003900 ORTHO05D005009 1.8e-49 201.8 343 37.0
Aa31LG1G27520 Aethionema arabicum HOM05D003900 ORTHO05D005009 3.1e-49 201.1 342 37.1
Thhalv10001319m.g Eutrema salsugineum HOM05D003900 ORTHO05D005009 5.2e-49 200.3 343 37.3
Aa31LG10G15460 Aethionema arabicum HOM05D003900 ORTHO05D005009 1.5e-48 198.7 344 36.3
Actinidia20162 Actinidia chinensis HOM05D003900 ORTHO05D005009 5.8e-48 196.8 197 44.7
Duzib133G1046 Durio zibethinus HOM05D003900 ORTHO05D005009 5.8e-48 196.8 353 34.3
CsaV3_7G025780 Cucumis sativus L. HOM05D003900 ORTHO05D005009 7.6e-48 196.4 204 46.1
Phvul.002G326200 Phaseolus vulgaris HOM05D003900 ORTHO05D005009 7.6e-48 196.4 269 39.4
FAN01G0431 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.7e-47 195.3 224 42.4
FAN06G4981 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.7e-47 195.3 328 37.2
TPR.G2949 Trifolium pratense HOM05D003900 ORTHO05D005009 6.4e-47 193.4 215 42.8
Eucgr.E00097 Eucalyptus grandis HOM05D003900 ORTHO05D005009 1.4e-46 192.2 338 37.0
Dinv32521 Davidia involucrata HOM05D003900 ORTHO05D005009 3.2e-46 191.0 188 45.2
arahy.Tifrunner.gnm1.ann1.U9H0N8 Arachis hypogaea HOM05D003900 ORTHO05D005009 5.4e-46 190.3 319 37.3
Lalb_Chr04g0259301 Lupinus albus HOM05D003900 ORTHO05D005009 5.4e-46 190.3 332 35.5
RcHm_v2.0_Chr3g0468501 Rosa chinensis HOM05D003900 ORTHO05D005009 5.4e-46 190.3 346 37.6
arahy.Tifrunner.gnm1.ann1.K45FBX Arachis hypogaea HOM05D003900 ORTHO05D005009 2.1e-45 188.3 319 37.3
MELO3C029134.2 Cucumis melo HOM05D003900 ORTHO05D005009 2.1e-45 188.3 204 45.1
FAN06G0440 Fragaria x ananassa HOM05D003900 ORTHO05D005009 4.6e-45 187.2 210 43.3
ClCG09G009150 Citrullus lanatus HOM05D003900 ORTHO05D005009 1.7e-44 185.3 204 43.1
Medtr8g098755 Medicago truncatula HOM05D003900 ORTHO05D005009 3.0e-44 184.5 197 43.1
Psat7g005640 Pisum sativum HOM05D003900 ORTHO05D005009 3.0e-44 184.5 194 43.8
Glyma.16G031800 Glycine max HOM05D003900 ORTHO05D005009 5.1e-44 183.7 318 35.5
Ciclev10019067m.g Citrus clementina HOM05D003900 ORTHO05D005009 5.6e-43 180.3 343 33.8
Sed0017189 Sechium edule HOM05D003900 ORTHO05D005009 6.2e-42 176.8 204 42.6
Cfa003873 Carpinus fangiana HOM05D003900 ORTHO05D005009 1.2e-40 172.6 362 34.8
ATR0721G158 Amborella trichopoda HOM05D003900 ORTHO05D005009 2.6e-40 171.4 278 37.8
PSO266G0010 Papaver somniferum HOM05D003900 ORTHO05D005009 1.3e-39 169.1 243 33.3
PSO384G0446 Papaver somniferum HOM05D003900 ORTHO05D005009 2.9e-39 167.9 233 34.3
FAN10G1060 Fragaria x ananassa HOM05D003900 ORTHO05D005009 3.9e-36 157.5 307 33.6
RcHm_v2.0_Chr5g0017031 Rosa chinensis HOM05D003900 ORTHO05D005009 7.4e-35 153.3 156 46.8
CDE10G0308 Ceratophyllum demersum HOM05D003834 ORTHO05D004483 3.6e-34 151.0 283 32.9
ECA236G1505 Erigeron canadensis HOM05D003900 ORTHO05D005009 3.6e-34 151.0 207 34.3
Aqoxy7G01955 Aquilegia oxysepala HOM05D003900 ORTHO05D005009 1.5e-32 145.6 411 29.0
HPP92_011504 Vanilla planifolia HOM05D003900 ORTHO05D005009 4.9e-31 140.6 301 33.2
MBI11_g19576_MAGBIO Magnolia biondii HOM05D003900 ORTHO05D005009 8.4e-31 139.8 283 35.0
Ca_17228_v3 Cicer arietinum L. HOM05D000113 ORTHO05D005009 2.5e-27 128.3 197 34.5
CARHR141390 Cardamine hirsuta HOM05D003900 ORTHO05D005009 1.1e-25 122.9 254 32.7
FAN18G4460 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.1e-25 122.9 224 33.9
CAN.G853.45 Capsicum annuum HOM05D003900 ORTHO05D005009 1.4e-22 112.5 153 40.5
VMungo0251G0997 Vigna mungo HOM05D003900 ORTHO05D005009 3.0e-20 104.8 178 34.3
Medtr3g088810 Medicago truncatula HOM05D003900 ORTHO05D005009 5.1e-20 104.0 134 37.3
RcHm_v2.0_Chr7g0228291 Rosa chinensis HOM05D003900 ORTHO05D005009 1.5e-19 102.4 85 56.5
CAN.G874.71 Capsicum annuum HOM05D003900 ORTHO05D005009 2.5e-19 101.7 116 38.8
FAN18G1403 Fragaria x ananassa HOM05D003900 ORTHO05D005009 3.3e-19 101.3 102 47.1
CAN.G430.2 Capsicum annuum HOM05D003900 ORTHO05D005009 6.3e-18 97.1 115 46.1
Aqoxy4G00899 Aquilegia oxysepala HOM05D003900 ORTHO05D005009 1.3e-15 89.4 180 28.9
SEGI_36951 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 1.9e-14 85.5 148 30.4
SEGI_36720 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 5.5e-14 84.0 238 26.9
CAN.G1005.1 Capsicum annuum HOM05D003900 ORTHO05D005009 9.3e-14 83.2 107 43.0
SEGI_03438 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 9.3e-14 83.2 88 42.0
SEGI_22559 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 6.7e-12 77.0 85 42.4
SEGI_18390 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 1.5e-11 75.9 212 27.8
BcaB03g12377 Brassica carinata HOM05D000891 ORTHO05D000761 2.5e-11 75.1 278 24.8
C03p79970 Brassica napus HOM05D000891 ORTHO05D000761 9.7e-11 73.2 279 25.1
BolC3t20249H Brassica oleracea HOM05D000891 ORTHO05D000761 9.7e-11 73.2 279 25.1
CAN.G460.4 Capsicum annuum HOM05D003900 ORTHO05D005009 2.2e-10 72.0 93 35.5
BcaC01g00449 Brassica carinata HOM05D000891 ORTHO05D000761 3.7e-10 71.2 279 24.7
SEGI_08205 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 3.7e-10 71.2 90 40.0
BraA08t34190Z Brassica rapa HOM05D000891 ORTHO05D000761 4.8e-10 70.9 278 25.2
A08p22340 Brassica napus HOM05D000891 ORTHO05D000761 1.1e-09 69.7 278 25.2
CARHR245040 Cardamine hirsuta HOM05D000891 ORTHO05D000761 9.1e-09 66.6 279 22.6
SEGI_28461 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 9.1e-09 66.6 88 36.4
Aa31LG6G13480 Aethionema arabicum HOM05D000891 ORTHO05D000761 1.5e-08 65.9 202 22.8
CAN.G609.3 Capsicum annuum HOM05D003900 ORTHO05D005009 2.0e-08 65.5 254 24.8
A09p11950 Brassica napus HOM05D000891 ORTHO05D000761 3.4e-08 64.7 273 22.0
AL7G14330 Arabidopsis lyrata HOM05D000891 ORTHO05D000761 4.5e-08 64.3 206 21.8
Sp3g31980 Schrenkiella parvula HOM05D000891 ORTHO05D000761 1.0e-07 63.2 295 23.4
C09p14070 Brassica napus HOM05D000891 ORTHO05D000761 1.3e-07 62.8 273 22.3
BraA09t36840Z Brassica rapa HOM05D000891 ORTHO05D000761 1.3e-07 62.8 273 22.0
Thhalv10027579m.g Eutrema salsugineum HOM05D000891 ORTHO05D000761 2.2e-07 62.0 279 20.8
Sed0016136 Sechium edule HOM05D006694 ORTHO05D008240 2.2e-07 62.0 156 25.0
CAN.G1005.2 Capsicum annuum HOM05D003900 ORTHO05D005009 2.9e-07 61.6 47 55.3
CARHR141380 Cardamine hirsuta HOM05D003900 ORTHO05D005009 2.9e-07 61.6 72 43.1
Medtr2g078690 Medicago truncatula HOM05D000424 ORTHO05D000355 2.9e-07 61.6 233 21.9
SEGI_07366 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 3.8e-07 61.2 78 37.2
SEGI_34583 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 3.8e-07 61.2 78 37.2
AT4G36680 Arabidopsis thaliana HOM05D000891 ORTHO05D000761 5.0e-07 60.8 206 21.4
SEGI_07919 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 6.5e-07 60.5 71 39.4
Lsat_1_v5_gn_2_76721 Lactuca sativa HOM05D000891 ORTHO05D000761 1.4e-06 59.3 272 23.5
Zm00001eb280170 Zea mays HOM05D003900 ORTHO05D005009 1.4e-06 59.3 100 31.0
Thhalv10009487m.g Eutrema salsugineum HOM05D006888 ORTHO05D008371 3.2e-06 58.2 122 23.0
SEGI_14951 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 4.2e-06 57.8 86 33.7
Phvul.008G105900 Phaseolus vulgaris HOM05D006694 ORTHO05D008240 5.5e-06 57.4 100 33.0
THA.LOC104818747 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 5.5e-06 57.4 237 26.6
CAN.G1443.12 Capsicum annuum HOM05D000162 ORTHO05D000090 9.4e-06 56.6 114 28.1
Ca_27341_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 9.4e-06 56.6 179 30.7
Ca_30865_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 9.4e-06 56.6 179 30.7
Thhalv10000737m.g Eutrema salsugineum HOM05D006888 ORTHO05D008371 9.4e-06 56.6 122 22.1


User provided reference genes

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