Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 6.9e-159 563.9 284 100.0
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 1.5e-100 370.2 286 67.1
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 2.5e-92 342.8 286 62.2
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 1.2e-91 340.5 278 64.7
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 6.2e-91 338.2 273 64.8
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 6.8e-90 334.7 278 62.9
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 8.9e-90 334.3 286 62.2
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 3.4e-89 332.4 277 63.2
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 5.8e-89 331.6 277 62.5
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 7.5e-89 331.3 267 64.0
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 9.8e-89 330.9 269 62.1
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 9.8e-89 330.9 269 62.1
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 9.8e-89 330.9 259 65.3
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 9.8e-89 330.9 269 62.5
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 1.7e-88 330.1 277 62.1
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 2.2e-88 329.7 255 64.3
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 2.9e-88 329.3 275 60.7
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 3.7e-88 328.9 275 62.2
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 3.7e-88 328.9 257 64.2
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 6.4e-88 328.2 275 61.8
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 6.4e-88 328.2 258 63.6
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 6.4e-88 328.2 255 65.1
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 8.3e-88 327.8 270 62.6
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 8.3e-88 327.8 270 62.6
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 1.1e-87 327.4 269 61.3
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 1.1e-87 327.4 273 60.4
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.4e-87 327.0 281 62.3
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 1.9e-87 326.6 253 64.4
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 2.4e-87 326.2 280 62.1
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 4.1e-87 325.5 286 60.8
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 5.4e-87 325.1 279 59.1
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 7.0e-87 324.7 307 58.3
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 7.0e-87 324.7 267 63.7
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 7.0e-87 324.7 268 63.4
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 9.2e-87 324.3 257 63.8
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.6e-86 323.6 275 61.5
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 1.6e-86 323.6 268 63.4
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 2.0e-86 323.2 269 60.6
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 2.7e-86 322.8 269 60.6
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 3.5e-86 322.4 285 61.4
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 3.5e-86 322.4 286 60.5
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 3.5e-86 322.4 270 62.6
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 4.6e-86 322.0 275 59.3
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 4.6e-86 322.0 281 60.5
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 6.0e-86 321.6 268 61.6
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 6.0e-86 321.6 269 61.0
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 6.0e-86 321.6 277 61.4
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 7.8e-86 321.2 275 61.1
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 7.8e-86 321.2 268 63.1
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 7.8e-86 321.2 281 61.2
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 1.0e-85 320.9 269 62.5
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 1.0e-85 320.9 275 60.4
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 1.0e-85 320.9 268 62.3
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 1.0e-85 320.9 259 61.8
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 1.0e-85 320.9 275 61.1
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.0e-85 320.9 281 60.5
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 1.7e-85 320.1 280 59.6
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 2.3e-85 319.7 275 59.6
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 2.3e-85 319.7 286 60.1
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 5.0e-85 318.5 274 59.5
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 6.6e-85 318.2 258 64.3
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 8.6e-85 317.8 277 59.6
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 1.5e-84 317.0 273 62.3
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 1.5e-84 317.0 273 62.3
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 1.9e-84 316.6 259 62.2
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 1.9e-84 316.6 269 60.6
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 2.5e-84 316.2 259 61.8
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 3.3e-84 315.8 274 59.9
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 4.3e-84 315.5 274 60.2
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 1.6e-83 313.5 281 58.4
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 1.8e-82 310.1 269 59.1
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 1.8e-82 310.1 268 61.2
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 1.8e-82 310.1 271 60.1
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 3.1e-82 309.3 259 61.4
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 4.0e-82 308.9 276 59.1
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 4.0e-82 308.9 271 59.8
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 4.0e-82 308.9 261 60.9
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 6.8e-82 308.1 274 58.4
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 8.9e-82 307.8 254 63.0
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 8.9e-82 307.8 290 56.6
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 2.0e-81 306.6 269 59.1
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 2.0e-81 306.6 261 59.4
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 9.8e-81 304.3 275 59.3
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 9.8e-81 304.3 271 58.3
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 1.7e-80 303.5 273 57.5
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 6.4e-80 301.6 271 58.3
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 2.4e-79 299.7 275 57.8
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 5.4e-79 298.5 280 55.0
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 1.2e-78 297.4 285 55.8
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 1.6e-78 297.0 269 57.6
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 1.6e-78 297.0 268 56.7
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 7.8e-78 294.7 260 60.0
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 7.8e-78 294.7 260 60.0
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 5.1e-77 292.0 275 57.5
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 2.5e-76 289.7 269 56.5
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 3.3e-76 289.3 265 57.4
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 4.3e-76 288.9 279 57.0
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 7.3e-76 288.1 257 58.8
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 9.5e-76 287.7 259 56.0
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 1.6e-75 287.0 255 57.6
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 2.1e-75 286.6 259 56.0
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 3.6e-75 285.8 259 56.0
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 3.6e-75 285.8 273 54.2
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 4.7e-75 285.4 259 56.0
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 4.7e-75 285.4 259 56.0
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 1.4e-74 283.9 259 56.0
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 1.4e-74 283.9 255 56.5
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 1.4e-74 283.9 267 54.3
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 2.3e-74 283.1 274 53.3
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 2.3e-74 283.1 272 53.7
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 3.1e-74 282.7 272 53.7
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 3.1e-74 282.7 255 55.7
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 4.0e-74 282.3 255 56.1
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 4.0e-74 282.3 255 56.1
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 1.5e-73 280.4 255 55.7
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 3.4e-73 279.3 274 53.6
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 5.8e-73 278.5 223 62.3
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 2.2e-72 276.6 265 55.8
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 3.7e-72 275.8 263 56.7
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 4.9e-72 275.4 270 54.8
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 1.1e-71 274.2 272 54.8
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 1.4e-71 273.9 274 53.6
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 2.6e-65 253.1 214 59.8
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 7.6e-65 251.5 271 52.0
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 1.3e-64 250.8 278 51.8
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 2.2e-64 250.0 157 73.2
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 2.2e-64 250.0 257 51.0
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 9.3e-63 244.6 223 58.3
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 2.1e-62 243.4 156 75.0
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 7.3e-60 235.0 162 70.4
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 1.6e-59 233.8 257 48.6
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 2.1e-59 233.4 272 49.3
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 6.9e-58 228.4 267 50.6
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 6.0e-54 215.3 236 53.0
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 9.6e-52 208.0 217 52.1
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 6.2e-51 205.3 277 44.8
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 2.2e-48 196.8 184 55.4
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 3.5e-46 189.5 259 42.9
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 7.4e-44 181.8 120 71.7
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 4.8e-43 179.1 177 54.8
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 1.4e-42 177.6 278 41.7
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 3.1e-42 176.4 278 42.4
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 4.1e-34 149.4 229 42.8
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 5.3e-34 149.1 279 33.7
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 5.3e-34 149.1 174 45.4
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 1.2e-33 147.9 90 77.8
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 2.3e-29 133.7 152 47.4
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 2.3e-29 133.7 201 40.8
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 3.9e-29 132.9 144 49.3
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 1.1e-26 124.8 90 68.9
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 1.2e-25 121.3 257 31.9
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 1.6e-22 110.9 135 47.4
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 1.4e-21 107.8 89 57.3
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 2.0e-20 104.0 66 71.2
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 8.2e-19 98.6 246 26.4
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.4e-18 97.1 81 64.2
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 3.1e-18 96.7 81 64.2
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 9.1e-18 95.1 76 69.7
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 1.2e-17 94.7 122 41.0
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 5.9e-17 92.4 126 43.7
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 6.5e-16 89.0 74 60.8
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.1e-15 88.2 74 60.8
Cre03.g193550 Chlamydomonas reinhardtii HOM05D004213 ORTHO05D005091 4.7e-14 82.8 142 33.1
Cfa024785 Carpinus fangiana HOM05D004213 ORTHO05D122664 5.7e-12 75.9 138 34.1
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.8e-11 73.6 47 76.6
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 3.7e-11 73.2 69 56.5
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 1.5e-07 61.2 56 69.6
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 1.9e-07 60.8 51 66.7
Ah.13g065600 Amaranthus hybridus HOM05D000001 ORTHO05D010162 2.7e-06 57.0 38 71.1


User provided reference genes

Program Settings