Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G02274 Striga asiatica HOM05D003721 ORTHO05D004303 3.4e-89 331.6 169 100.0
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 6.6e-40 167.9 183 60.1
SalBow3G1665 Salvia bowleyana HOM05D003721 ORTHO05D004303 8.9e-37 157.5 190 53.7
MSTRG.20868 Avicennia marina HOM05D003721 ORTHO05D004303 1.2e-36 157.1 183 55.2
Cfa003861 Carpinus fangiana HOM05D003721 ORTHO05D004303 2.0e-36 156.4 183 55.2
Duzib133G0509 Durio zibethinus HOM05D003721 ORTHO05D004303 2.0e-36 156.4 183 55.2
vmacro13221 Vaccinium macrocarpon HOM05D003721 ORTHO05D004303 2.0e-36 156.4 190 51.1
Gohir.A12G106100 Gossypium hirsutum HOM05D003721 ORTHO05D004303 2.6e-36 156.0 183 54.6
Dinv32529 Davidia involucrata HOM05D003721 ORTHO05D004303 4.4e-36 155.2 183 54.6
Atru.chr5.592 Acer truncatum HOM05D003721 ORTHO05D004303 5.7e-36 154.8 183 54.6
Gorai.008G119300 Gossypium raimondii HOM05D003721 ORTHO05D004303 1.3e-35 153.7 183 55.7
MD07G1130300 Malus domestica HOM05D003721 ORTHO05D004303 1.3e-35 153.7 183 54.6
Prupe.2G178900 Prunus persica HOM05D003721 ORTHO05D004303 1.3e-35 153.7 183 54.1
CSS0014201 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 1.7e-35 153.3 182 53.3
CSS0038344 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 1.7e-35 153.3 182 53.3
Gohir.D12G110000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 2.8e-35 152.5 183 53.6
Dinv43871 Davidia involucrata HOM05D003721 ORTHO05D004303 4.9e-35 151.8 183 53.0
FvH4_7g15532 Fragaria vesca HOM05D003721 ORTHO05D004303 4.9e-35 151.8 183 53.6
FAN03G0785 Fragaria x ananassa HOM05D003721 ORTHO05D004303 4.9e-35 151.8 183 53.6
FAN06G3247 Fragaria x ananassa HOM05D003721 ORTHO05D004303 4.9e-35 151.8 183 53.6
FAN10G1929 Fragaria x ananassa HOM05D003721 ORTHO05D004303 4.9e-35 151.8 183 53.6
Thecc.01G351200 Theobroma cacao HOM05D003721 ORTHO05D004303 6.3e-35 151.4 183 55.2
Cpa.g.sc11.59 Carica papaya HOM05D003721 ORTHO05D004303 8.3e-35 151.0 183 53.0
COL.COLO4_06374 Corchorus olitorius HOM05D003721 ORTHO05D004303 8.3e-35 151.0 183 53.0
Duzib138G0478 Durio zibethinus HOM05D003721 ORTHO05D004303 8.3e-35 151.0 183 54.1
MD01G1072600 Malus domestica HOM05D003721 ORTHO05D004303 8.3e-35 151.0 183 54.1
Rhsim07G0009400 Rhododendron simsii HOM05D003721 ORTHO05D004303 8.3e-35 151.0 182 52.2
RcHm_v2.0_Chr1g0357861 Rosa chinensis HOM05D003721 ORTHO05D004303 8.3e-35 151.0 183 53.0
Actinidia20169 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.1e-34 150.6 182 53.3
FAN10G1794 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.4e-34 150.2 183 53.0
FAN06G4946 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.8e-34 149.8 183 53.0
Gohir.A11G093000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 2.4e-34 149.4 190 51.6
QL04p055909 Quercus lobata HOM05D003721 ORTHO05D004303 2.4e-34 149.4 183 53.0
Gorai.007G104100 Gossypium raimondii HOM05D003721 ORTHO05D004303 3.1e-34 149.1 190 52.1
GSVIVG01027009001 Vitis vinifera HOM05D003721 ORTHO05D004303 3.1e-34 149.1 183 53.0
CANSAT94G0013 Cannabis sativa HOM05D003721 ORTHO05D004303 4.1e-34 148.7 183 51.9
Migut.B01806 Erythranthe guttata HOM05D003721 ORTHO05D004303 9.2e-34 147.5 183 54.1
Glyma.16G030600 Glycine max HOM05D003721 ORTHO05D004303 1.6e-33 146.7 183 51.9
Lalb_Chr17g0338961 Lupinus albus HOM05D003721 ORTHO05D004303 1.6e-33 146.7 182 52.2
CiPaw.01G068800 Carya illinoinensis HOM05D003721 ORTHO05D004303 2.0e-33 146.4 183 53.0
AUR62004419 Chenopodium quinoa HOM05D003721 ORTHO05D004303 4.5e-33 145.2 183 52.5
Ciclev10018933m.g Citrus clementina HOM05D003721 ORTHO05D004303 4.5e-33 145.2 183 52.5
Glyma.07G062500 Glycine max HOM05D003721 ORTHO05D004303 4.5e-33 145.2 183 51.4
CSS0042065 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 5.9e-33 144.8 182 52.2
Potri.002G165500 Populus trichocarpa HOM05D003721 ORTHO05D004303 5.9e-33 144.8 183 50.3
Sc23g0002500 Simmondsia chinensis HOM05D003721 ORTHO05D004303 5.9e-33 144.8 183 51.9
arahy.Tifrunner.gnm1.ann1.X01UQ7 Arachis hypogaea HOM05D003721 ORTHO05D004303 7.8e-33 144.4 190 51.1
AUR62022625 Chenopodium quinoa HOM05D003721 ORTHO05D004303 7.8e-33 144.4 183 52.5
VMungo0331G1476 Vigna mungo HOM05D003721 ORTHO05D004303 1.0e-32 144.1 183 50.3
Lj7A506T70 Lonicera japonica HOM05D003721 ORTHO05D004303 1.3e-32 143.7 179 53.6
Potri.014G091300 Populus trichocarpa HOM05D003721 ORTHO05D004303 1.3e-32 143.7 183 50.8
Glyma.09G253700 Glycine max HOM05D003721 ORTHO05D004303 2.3e-32 142.9 190 50.0
Hund16678 Selenicereus undatus HOM05D003721 ORTHO05D004303 2.3e-32 142.9 183 51.9
TPR.G29569 Trifolium pratense HOM05D003721 ORTHO05D004303 2.9e-32 142.5 190 48.9
Glyma.18G239200 Glycine max HOM05D003721 ORTHO05D004303 3.9e-32 142.1 190 49.5
Lalb_Chr04g0259321 Lupinus albus HOM05D003721 ORTHO05D004303 3.9e-32 142.1 182 52.2
Solyc01g095210.3 Solanum lycopersicum HOM05D003721 ORTHO05D004303 3.9e-32 142.1 183 49.2
Sopen01g039000 Solanum pennellii HOM05D003721 ORTHO05D004303 3.9e-32 142.1 183 49.2
Nn1g01721 Nelumbo nucifera HOM05D003721 ORTHO05D004303 5.0e-32 141.7 181 51.9
TWI59G1183 Tripterygium wilfordii HOM05D003721 ORTHO05D004303 8.6e-32 141.0 183 50.3
Peaxi162Scf00020g01717 Petunia axillaris HOM05D003721 ORTHO05D004303 1.1e-31 140.6 183 50.8
Phvul.010G105500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 1.1e-31 140.6 183 49.2
unitig_52.g17061 Utricularia gibba HOM05D003721 ORTHO05D004303 1.1e-31 140.6 183 50.8
EL10Ac1g00346 Beta vulgaris HOM05D003721 ORTHO05D004303 1.5e-31 140.2 183 51.4
Manes.07G084500 Manihot esculenta HOM05D003721 ORTHO05D004303 1.5e-31 140.2 182 51.6
Nitab4.5_0000915g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 1.5e-31 140.2 183 48.6
VMungo1383G3272 Vigna mungo HOM05D003721 ORTHO05D004303 1.5e-31 140.2 190 49.5
Cc02_g38690 Coffea canephora HOM05D003721 ORTHO05D004303 1.9e-31 139.8 183 50.3
arahy.Tifrunner.gnm1.ann1.J8U9TP Arachis hypogaea HOM05D003721 ORTHO05D004303 2.5e-31 139.4 190 48.9
Ca_07946_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 2.5e-31 139.4 190 47.9
Eucgr.D02329 Eucalyptus grandis HOM05D003721 ORTHO05D004303 2.5e-31 139.4 182 50.0
CDE02G2110 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 3.3e-31 139.0 183 49.7
Sp5g32820 Schrenkiella parvula HOM05D003721 ORTHO05D004303 3.3e-31 139.0 183 51.4
Phvul.008G057500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 4.3e-31 138.7 190 48.4
AL4G45430 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 5.6e-31 138.3 183 50.8
Lj1g0019249 Lotus japonicus HOM05D003721 ORTHO05D004303 5.6e-31 138.3 190 47.4
Nitab4.5_0003501g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 5.6e-31 138.3 183 48.6
PGSC0003DMG400000197 Solanum tuberosum HOM05D003721 ORTHO05D004303 7.3e-31 137.9 183 47.5
TAR629G3186 Trochodendron aralioides HOM05D003721 ORTHO05D004303 7.3e-31 137.9 183 50.3
Ah.05g180090 Amaranthus hybridus HOM05D003721 ORTHO05D004303 9.5e-31 137.5 183 50.8
MELO3C021177.2 Cucumis melo HOM05D003721 ORTHO05D004303 9.5e-31 137.5 190 47.9
HanXRQChr06g0166991 Helianthus annuus HOM05D003721 ORTHO05D004303 9.5e-31 137.5 183 49.2
DCAR_008641 Daucus carota HOM05D003721 ORTHO05D004303 1.2e-30 137.1 183 51.9
Os08g0386900 Oryza sativa ssp. japonica HOM05D003721 ORTHO05D004303 1.2e-30 137.1 183 48.6
AT3G61570 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 1.6e-30 136.7 182 48.9
CARHR141460 Cardamine hirsuta HOM05D003721 ORTHO05D004303 1.6e-30 136.7 183 50.3
Thhalv10005812m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 1.6e-30 136.7 182 48.9
Medtr7g079200 Medicago truncatula HOM05D003721 ORTHO05D004303 2.1e-30 136.3 190 48.4
AT2G46180 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 2.8e-30 136.0 183 49.7
CAN.G78.136 Capsicum annuum HOM05D003721 ORTHO05D004303 2.8e-30 136.0 183 49.7
TPR.G18168 Trifolium pratense HOM05D003721 ORTHO05D004303 2.8e-30 136.0 183 50.8
AL5G43940 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 3.6e-30 135.6 182 49.5
PSO170G3080 Papaver somniferum HOM05D003721 ORTHO05D004303 3.6e-30 135.6 183 48.6
Sabra14G0066200 Salix brachista HOM05D003721 ORTHO05D004303 3.6e-30 135.6 209 44.5
ClCG06G003380 Citrullus lanatus HOM05D003721 ORTHO05D004303 4.7e-30 135.2 190 47.9
MBI07_g11740_MAGBIO Magnolia biondii HOM05D003721 ORTHO05D004303 4.7e-30 135.2 181 50.8
PGR031G3178 Punica granatum HOM05D003721 ORTHO05D004303 4.7e-30 135.2 182 51.1
A09p53630 Brassica napus HOM05D003721 ORTHO05D004303 6.1e-30 134.8 182 51.1
BraA09t40785Z Brassica rapa HOM05D003721 ORTHO05D004303 6.1e-30 134.8 182 51.1
PSO063G0643 Papaver somniferum HOM05D003721 ORTHO05D004303 6.1e-30 134.8 183 48.6
Aa31LG1G27570 Aethionema arabicum HOM05D003721 ORTHO05D004303 8.0e-30 134.4 178 50.6
CDE08G1001 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 8.0e-30 134.4 183 49.2
CsaV3_6G000920 Cucumis sativus L. HOM05D003721 ORTHO05D004303 8.0e-30 134.4 190 47.4
Sp5g01840 Schrenkiella parvula HOM05D003721 ORTHO05D004303 8.0e-30 134.4 183 49.7
BcaC07g40669 Brassica carinata HOM05D003721 ORTHO05D004303 1.0e-29 134.0 182 50.0
BcaC07g42682 Brassica carinata HOM05D003721 ORTHO05D004303 1.0e-29 134.0 182 50.0
A07p25580 Brassica napus HOM05D003721 ORTHO05D004303 1.0e-29 134.0 182 49.5
C06p27570 Brassica napus HOM05D003721 ORTHO05D004303 1.0e-29 134.0 182 49.5
C08p36410 Brassica napus HOM05D003721 ORTHO05D004303 1.0e-29 134.0 182 50.0
BolC6t37925H Brassica oleracea HOM05D003721 ORTHO05D004303 1.0e-29 134.0 182 49.5
BolC8t51224H Brassica oleracea HOM05D003721 ORTHO05D004303 1.0e-29 134.0 182 50.0
BraA07t30199Z Brassica rapa HOM05D003721 ORTHO05D004303 1.0e-29 134.0 182 49.5
Ca_03491_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 1.4e-29 133.7 183 49.7
Sed0001790 Sechium edule HOM05D003721 ORTHO05D004303 1.4e-29 133.7 190 47.4
Zm00001eb042060 Zea mays HOM05D003721 ORTHO05D004303 1.8e-29 133.3 183 48.1
BcaC08g45136 Brassica carinata HOM05D003721 ORTHO05D004303 3.1e-29 132.5 182 48.9
ECA240G1536 Erigeron canadensis HOM05D003721 ORTHO05D004303 3.1e-29 132.5 183 49.2
Carub.0004s2886 Capsella rubella HOM05D003721 ORTHO05D004303 4.0e-29 132.1 183 49.2
BcaB02g07370 Brassica carinata HOM05D003721 ORTHO05D004303 1.2e-28 130.6 179 49.2
Medtr8g028445 Medicago truncatula HOM05D003721 ORTHO05D004303 1.5e-28 130.2 183 47.5
Thhalv10001332m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 3.4e-28 129.0 184 47.3
ATR1093G009 Amborella trichopoda HOM05D003721 ORTHO05D004303 9.8e-28 127.5 183 45.9
HPP92_023080 Vanilla planifolia HOM05D003721 ORTHO05D004303 9.8e-28 127.5 184 45.7
Gohir.D11G097866 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.7e-27 126.7 161 51.6
Sed0002636 Sechium edule HOM05D003721 ORTHO05D004303 4.9e-27 125.2 190 45.3
arahy.Tifrunner.gnm1.ann1.M56506 Arachis hypogaea HOM05D003721 ORTHO05D004303 1.1e-26 124.0 183 46.4
arahy.Tifrunner.gnm1.ann1.QXLJ4L Arachis hypogaea HOM05D003721 ORTHO05D004303 5.4e-26 121.7 183 45.9
Psat3g105680 Pisum sativum HOM05D003721 ORTHO05D004303 1.2e-25 120.6 161 47.2
Haze_15580 Corylus avellana HOM05D003721 ORTHO05D004303 1.6e-25 120.2 132 55.3
Haze_15575 Corylus avellana HOM05D003721 ORTHO05D004303 4.6e-25 118.6 132 54.5
SEGI_16602 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 3.3e-23 112.5 183 43.2
Aqoxy5G04062 Aquilegia oxysepala HOM05D003721 ORTHO05D004303 6.2e-22 108.2 183 45.4
BcaC07g40653 Brassica carinata HOM05D003721 ORTHO05D004303 3.1e-21 105.9 180 41.1
BcaC07g40657 Brassica carinata HOM05D003721 ORTHO05D004303 3.1e-21 105.9 178 42.7
THA.LOC104817323 Tarenaya hassleriana HOM05D003721 ORTHO05D004303 8.9e-21 104.4 184 41.3
BcaC07g42673 Brassica carinata HOM05D003721 ORTHO05D004303 4.1e-18 95.5 182 38.5
Pp3c3_18730 Physcomitrium patens HOM05D003721 ORTHO05D004303 2.1e-17 93.2 184 39.7
Mapoly0053s0042 Marchantia polymorpha HOM05D003721 ORTHO05D004303 3.5e-17 92.4 181 40.9
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 3.0e-16 89.4 111 50.5
Pp3c12_14500 Physcomitrium patens HOM05D003721 ORTHO05D004303 1.9e-15 86.7 182 38.5
QL01p002178 Quercus lobata HOM05D003721 ORTHO05D004303 7.3e-15 84.7 166 42.2
TPR.G35781 Trifolium pratense HOM05D003721 ORTHO05D004303 8.9e-13 77.8 113 43.4
AagrBONN_evm.TU.Sc2ySwM_369.3 Anthoceros agrestis HOM05D003721 ORTHO05D004303 1.2e-09 67.4 170 33.5
BcaC08g45231 Brassica carinata HOM05D003721 ORTHO05D004303 1.0e-08 64.3 42 71.4
arahy.Tifrunner.gnm1.ann1.LL4IHI Arachis hypogaea HOM05D003721 ORTHO05D004303 1.7e-08 63.5 43 69.8
Lsat_1_v5_gn_3_138600 Lactuca sativa HOM05D003721 ORTHO05D004303 1.5e-07 60.5 184 32.6
Actinidia10078 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.9e-07 60.1 56 57.1
Sabra02G0146000 Salix brachista HOM05D003721 ORTHO05D004303 5.6e-07 58.5 43 60.5
Oeu010635.1 Olea europaea HOM05D003721 ORTHO05D004303 8.1e-06 54.7 183 30.6


User provided reference genes

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