Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G02270 Striga asiatica HOM05D002522 ORTHO05D002744 3.1e-87 325.1 162 100.0
SGA_v2.0_scaffold36G14409 Striga asiatica HOM05D002725 ORTHO05D003279 2.4e-39 166.0 79 98.7
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 9.4e-20 100.9 77 64.9
Migut.B01812 Erythranthe guttata HOM05D002522 ORTHO05D002744 8.8e-18 94.4 59 79.7
Oeu023794.1 Olea europaea HOM05D002522 ORTHO05D002744 3.5e-14 82.4 70 65.7
unitig_0.g333 Utricularia gibba HOM05D002522 ORTHO05D002744 3.8e-13 79.0 74 52.7
Lsat_1_v5_gn_3_138521 Lactuca sativa HOM05D002522 ORTHO05D002744 5.5e-12 75.1 90 47.8
Oeu054365.1 Olea europaea HOM05D002522 ORTHO05D002744 7.2e-12 74.7 46 78.3
CSS0042455 Camellia sinensis var. sinensis HOM05D002522 ORTHO05D002744 2.1e-11 73.2 47 72.3
Nitab4.5_0000305g0350 Nicotiana tabacum HOM05D002522 ORTHO05D002744 2.1e-11 73.2 51 60.8
Nitab4.5_0009475g0020 Nicotiana tabacum HOM05D002522 ORTHO05D002744 4.7e-11 72.0 75 45.3
Ciclev10021974m.g Citrus clementina HOM05D002522 ORTHO05D002744 1.0e-10 70.9 45 80.0
Nn1g01744 Nelumbo nucifera HOM05D002522 ORTHO05D002744 1.4e-10 70.5 46 73.9
MD01G1073100 Malus domestica HOM05D002522 ORTHO05D002744 1.8e-10 70.1 56 64.3
Manes.01G251300 Manihot esculenta HOM05D002522 ORTHO05D002744 2.3e-10 69.7 57 63.2
GSVIVG01027017001 Vitis vinifera HOM05D002522 ORTHO05D002744 2.3e-10 69.7 40 80.0
TPR.G18162 Trifolium pratense HOM05D002522 ORTHO05D002744 3.0e-10 69.3 54 64.8
Glyma.07G062300 Glycine max HOM05D002522 ORTHO05D002744 4.0e-10 68.9 38 81.6
Glyma.16G030300 Glycine max HOM05D002522 ORTHO05D002744 8.8e-10 67.8 38 78.9
Potri.014G092200 Populus trichocarpa HOM05D002522 ORTHO05D002744 8.8e-10 67.8 40 80.0
Gohir.A08G032100 Gossypium hirsutum HOM05D002522 ORTHO05D002744 1.2e-09 67.4 40 77.5
Gohir.D08G043000 Gossypium hirsutum HOM05D002522 ORTHO05D002744 1.2e-09 67.4 40 77.5
Gorai.004G041600 Gossypium raimondii HOM05D002522 ORTHO05D002744 1.2e-09 67.4 40 77.5
Nitab4.5_0003779g0130 Nicotiana tabacum HOM05D002522 ORTHO05D002744 1.2e-09 67.4 54 55.6
THA.LOC104827610 Tarenaya hassleriana HOM05D002522 ORTHO05D002744 1.2e-09 67.4 40 77.5
TAR629G3238 Trochodendron aralioides HOM05D002522 ORTHO05D002744 1.2e-09 67.4 45 68.9
Prupe.2G179500 Prunus persica HOM05D002522 ORTHO05D002744 1.5e-09 67.0 101 45.5
TWI59G0857 Tripterygium wilfordii HOM05D002522 ORTHO05D002744 1.5e-09 67.0 40 75.0
arahy.Tifrunner.gnm1.ann1.R2D0FR Arachis hypogaea HOM05D002522 ORTHO05D002744 2.6e-09 66.2 67 53.7
CDE04G1514 Ceratophyllum demersum HOM05D002522 ORTHO05D002744 2.6e-09 66.2 69 47.8
COL.COLO4_06366 Corchorus olitorius HOM05D002522 ORTHO05D002744 2.6e-09 66.2 40 77.5
Duzib133G1226 Durio zibethinus HOM05D002522 ORTHO05D002744 2.6e-09 66.2 40 77.5
Hma1.2p1_0783F.1_g217000 Hydrangea macrophylla HOM05D002522 ORTHO05D002744 2.6e-09 66.2 57 59.6
Thecc.01G350300 Theobroma cacao HOM05D002522 ORTHO05D002744 2.6e-09 66.2 40 77.5
CANSAT56G2736 Cannabis sativa HOM05D002522 ORTHO05D002744 3.4e-09 65.9 40 77.5
Nitab4.5_0002926g0020 Nicotiana tabacum HOM05D002522 ORTHO05D002744 3.4e-09 65.9 49 59.2
Solyc01g095270.3 Solanum lycopersicum HOM05D002522 ORTHO05D002744 3.4e-09 65.9 75 45.3
Sopen01g039060 Solanum pennellii HOM05D002522 ORTHO05D002744 3.4e-09 65.9 75 45.3
CDE10G1032 Ceratophyllum demersum HOM05D002522 ORTHO05D002744 4.4e-09 65.5 69 47.8
Gorai.004G042900 Gossypium raimondii HOM05D002522 ORTHO05D002744 4.4e-09 65.5 40 75.0
Actinidia28483 Actinidia chinensis HOM05D002522 ORTHO05D002744 5.7e-09 65.1 50 62.0
arahy.Tifrunner.gnm1.ann1.D4XZDE Arachis hypogaea HOM05D002522 ORTHO05D002744 5.7e-09 65.1 67 50.7
Gohir.A08G033400 Gossypium hirsutum HOM05D002522 ORTHO05D002744 5.7e-09 65.1 40 75.0
Lj9C594G20 Lonicera japonica HOM05D002522 ORTHO05D002744 5.7e-09 65.1 46 67.4
Lj3g0005347 Lotus japonicus HOM05D002522 ORTHO05D002744 5.7e-09 65.1 38 76.3
SalBow4G1649 Salvia bowleyana HOM05D002522 ORTHO05D002744 5.7e-09 65.1 31 93.5
SalBow5G3780 Salvia bowleyana HOM05D002522 ORTHO05D002744 5.7e-09 65.1 31 93.5
Sed0004294 Sechium edule HOM05D002522 ORTHO05D002744 5.7e-09 65.1 62 54.8
Aa31LG1G27600 Aethionema arabicum HOM05D002522 ORTHO05D002744 7.5e-09 64.7 41 70.7
PSO384G1843 Papaver somniferum HOM05D002522 ORTHO05D002744 7.5e-09 64.7 67 52.2
Atru.chr5.602 Acer truncatum HOM05D002522 ORTHO05D002744 9.8e-09 64.3 45 71.1
Cpa.g.sc184.15 Carica papaya HOM05D002522 ORTHO05D002744 9.8e-09 64.3 41 70.7
CDE10G1313 Ceratophyllum demersum HOM05D002522 ORTHO05D002744 9.8e-09 64.3 40 70.0
Phvul.010G105700 Phaseolus vulgaris HOM05D002522 ORTHO05D002744 9.8e-09 64.3 38 73.7
RcHm_v2.0_Chr1g0358261 Rosa chinensis HOM05D002522 ORTHO05D002744 9.8e-09 64.3 56 58.9
CiPaw.02G036900 Carya illinoinensis HOM05D002522 ORTHO05D002744 1.3e-08 63.9 40 75.0
Cc02_g38730 Coffea canephora HOM05D002522 ORTHO05D002744 1.3e-08 63.9 40 72.5
Gohir.D08G044100 Gossypium hirsutum HOM05D002522 ORTHO05D002744 1.3e-08 63.9 40 72.5
THA.LOC104802051 Tarenaya hassleriana HOM05D002522 ORTHO05D002744 1.3e-08 63.9 40 75.0
FAN06G2411 Fragaria x ananassa HOM05D002522 ORTHO05D002744 1.7e-08 63.5 79 45.6
Rhsim01G0168200 Rhododendron simsii HOM05D002522 ORTHO05D002744 1.7e-08 63.5 71 46.5
Sabra14G0066800 Salix brachista HOM05D002522 ORTHO05D002744 1.7e-08 63.5 40 75.0
Sc23g0002460 Simmondsia chinensis HOM05D002522 ORTHO05D002744 1.7e-08 63.5 43 69.8
Hma1.2p1_0384F.1_g140730 Hydrangea macrophylla HOM05D002522 ORTHO05D002744 2.2e-08 63.2 43 62.8
Mapoly0082s0009 Marchantia polymorpha HOM05D002522 ORTHO05D002744 2.2e-08 63.2 89 38.2
Medtr8g028425 Medicago truncatula HOM05D002522 ORTHO05D002744 2.2e-08 63.2 54 59.3
Sc26g0000810 Simmondsia chinensis HOM05D002522 ORTHO05D002744 2.2e-08 63.2 40 72.5
CAN.G602.8 Capsicum annuum HOM05D002522 ORTHO05D002744 2.8e-08 62.8 75 49.3
HanXRQChr03g0093431 Helianthus annuus HOM05D002522 ORTHO05D002744 2.8e-08 62.8 43 62.8
PSO135G0267 Papaver somniferum HOM05D002522 ORTHO05D002744 2.8e-08 62.8 61 52.5
QL04p059084 Quercus lobata HOM05D002522 ORTHO05D002744 2.8e-08 62.8 65 56.9
CBR_g20268 Chara braunii HOM05D002522 ORTHO05D002744 3.7e-08 62.4 77 45.5
Ca_03487_v3 Cicer arietinum L. HOM05D002522 ORTHO05D002744 3.7e-08 62.4 38 73.7
arahy.Tifrunner.gnm1.ann1.9XT8EU Arachis hypogaea HOM05D002522 ORTHO05D002744 4.9e-08 62.0 39 66.7
arahy.Tifrunner.gnm1.ann1.PM7ZWD Arachis hypogaea HOM05D002522 ORTHO05D002744 4.9e-08 62.0 39 66.7
Hund27236 Selenicereus undatus HOM05D002522 ORTHO05D002744 4.9e-08 62.0 57 59.6
Solyc05g050110.3 Solanum lycopersicum HOM05D002522 ORTHO05D002744 6.3e-08 61.6 72 48.6
Sopen05g028490 Solanum pennellii HOM05D002522 ORTHO05D002744 6.3e-08 61.6 72 48.6
PGSC0003DMG400000075 Solanum tuberosum HOM05D002522 ORTHO05D002744 6.3e-08 61.6 32 81.2
PGSC0003DMG400033873 Solanum tuberosum HOM05D002522 ORTHO05D002744 6.3e-08 61.6 72 48.6
CSS0020906 Camellia sinensis var. sinensis HOM05D002522 ORTHO05D002744 8.3e-08 61.2 59 55.9
CSS0021990 Camellia sinensis var. sinensis HOM05D002522 ORTHO05D002744 8.3e-08 61.2 59 55.9
Peaxi162Scf00403g00833 Petunia axillaris HOM05D002522 ORTHO05D002744 8.3e-08 61.2 45 66.7
Duzib138G1781 Durio zibethinus HOM05D002522 ORTHO05D002744 1.4e-07 60.5 40 72.5
VMungo0331G0494 Vigna mungo HOM05D002522 ORTHO05D002744 1.4e-07 60.5 32 81.2
FvH4_7g15580 Fragaria vesca HOM05D002522 ORTHO05D002744 1.8e-07 60.1 79 44.3
FAN03G0161 Fragaria x ananassa HOM05D002522 ORTHO05D002744 1.8e-07 60.1 79 44.3
FAN06G4053 Fragaria x ananassa HOM05D002522 ORTHO05D002744 1.8e-07 60.1 79 44.3
Hund16679 Selenicereus undatus HOM05D002522 ORTHO05D002744 1.8e-07 60.1 54 57.4
ATR1131G064 Amborella trichopoda HOM05D002522 ORTHO05D002744 2.4e-07 59.7 51 52.9
FAN01G2644 Fragaria x ananassa HOM05D002522 ORTHO05D002744 2.4e-07 59.7 79 44.3
FAN10G0527 Fragaria x ananassa HOM05D002522 ORTHO05D002744 2.4e-07 59.7 79 44.3
FAN10G4069 Fragaria x ananassa HOM05D002522 ORTHO05D002744 2.4e-07 59.7 79 44.3
Eucgr.E00085 Eucalyptus grandis HOM05D002522 ORTHO05D002744 3.1e-07 59.3 30 86.7
Nn7g37324 Nelumbo nucifera HOM05D002522 ORTHO05D002744 3.1e-07 59.3 48 62.5
Psat4g157240 Pisum sativum HOM05D002522 ORTHO05D002744 4.1e-07 58.9 46 65.2
unitig_699.g19805 Utricularia gibba HOM05D002522 ORTHO05D002744 4.1e-07 58.9 37 75.7
CAN.G78.140 Capsicum annuum HOM05D002522 ORTHO05D002744 5.4e-07 58.5 30 80.0
Peaxi162Scf01254g00026 Petunia axillaris HOM05D002522 ORTHO05D002744 7.0e-07 58.2 32 75.0
Lalb_Chr04g0261811 Lupinus albus HOM05D002522 ORTHO05D002744 1.2e-06 57.4 36 72.2
Phvul.006G108800 Phaseolus vulgaris HOM05D002522 ORTHO05D002744 1.6e-06 57.0 37 64.9
PGR042G3909 Punica granatum HOM05D002522 ORTHO05D002744 2.0e-06 56.6 60 53.3
AL4G45480 Arabidopsis lyrata HOM05D002522 ORTHO05D002744 2.7e-06 56.2 38 63.2
EL10Ac1g00339 Beta vulgaris HOM05D002522 ORTHO05D002744 2.7e-06 56.2 30 83.3
A05p01590 Brassica napus HOM05D002522 ORTHO05D002744 2.7e-06 56.2 39 61.5
DCAR_008643 Daucus carota HOM05D002522 ORTHO05D002744 3.5e-06 55.8 44 65.9
AT2G46220 Arabidopsis thaliana HOM05D002522 ORTHO05D002744 4.5e-06 55.5 85 37.6
BcaC02g12507 Brassica carinata HOM05D002522 ORTHO05D002744 4.5e-06 55.5 65 49.2
C04p01810 Brassica napus HOM05D002522 ORTHO05D002744 4.5e-06 55.5 65 49.2
Thhalv10001605m.g Eutrema salsugineum HOM05D002522 ORTHO05D002744 4.5e-06 55.5 38 60.5
Pp3c1_3310 Physcomitrium patens HOM05D002522 ORTHO05D002744 4.5e-06 55.5 52 48.1
SEGI_21370 Sequoiadendron giganteum HOM05D002522 ORTHO05D002744 4.5e-06 55.5 57 49.1
Lalb_Chr15g0076101 Lupinus albus HOM05D002522 ORTHO05D002744 7.7e-06 54.7 45 55.6
Sp4g28260 Schrenkiella parvula HOM05D002522 ORTHO05D002744 7.7e-06 54.7 54 50.0


User provided reference genes

Program Settings