Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G02266 Striga asiatica HOM05D001461 ORTHO05D005534 9.5e-62 240.0 118 100.0
SGA_v2.0_scaffold95G28797 Striga asiatica HOM05D001461 ORTHO05D005534 8.3e-58 226.9 118 92.4
Migut.B01819 Erythranthe guttata HOM05D001461 ORTHO05D005534 9.2e-57 223.4 118 89.8
Migut.E01260 Erythranthe guttata HOM05D001461 ORTHO05D005534 2.7e-56 221.9 118 89.0
MSTRG.20880 Avicennia marina HOM05D001461 ORTHO05D005534 1.0e-55 219.9 118 89.0
SalBow3G1410 Salvia bowleyana HOM05D001461 ORTHO05D005534 4.7e-53 211.1 119 87.4
Lalb_Chr09g0332711 Lupinus albus HOM05D001461 ORTHO05D005534 8.0e-53 210.3 114 87.7
unitig_62.g23802 Utricularia gibba HOM05D001461 ORTHO05D005534 3.1e-52 208.4 128 79.7
Atru.chr9.2071 Acer truncatum HOM05D001461 ORTHO05D005534 4.0e-52 208.0 118 83.9
TWI18G0300 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 6.8e-52 207.2 116 82.8
TWI60G0303 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 1.5e-51 206.1 116 81.9
Dinv32542 Davidia involucrata HOM05D001461 ORTHO05D005534 3.4e-51 204.9 116 83.6
arahy.Tifrunner.gnm1.ann1.Z0SXD6 Arachis hypogaea HOM05D001461 ORTHO05D005534 5.8e-51 204.1 114 84.2
Medtr5g009740 Medicago truncatula HOM05D001461 ORTHO05D005534 5.8e-51 204.1 114 85.1
Manes.02G014100 Manihot esculenta HOM05D001461 ORTHO05D005534 9.8e-51 203.4 116 82.8
Actinidia10093 Actinidia chinensis HOM05D001461 ORTHO05D005534 1.3e-50 203.0 116 81.0
COL.COLO4_21750 Corchorus olitorius HOM05D001461 ORTHO05D005534 1.3e-50 203.0 116 81.9
CiPaw.12G086700 Carya illinoinensis HOM05D001461 ORTHO05D005534 1.7e-50 202.6 118 82.2
arahy.Tifrunner.gnm1.ann1.PFJ4ZJ Arachis hypogaea HOM05D001461 ORTHO05D005534 4.9e-50 201.1 114 83.3
FAN04G2189 Fragaria x ananassa HOM05D001461 ORTHO05D002801 4.9e-50 201.1 118 81.4
FAN08G0967 Fragaria x ananassa HOM05D001461 ORTHO05D005534 4.9e-50 201.1 118 81.4
Glyma.01G223800 Glycine max HOM05D001461 ORTHO05D005534 6.4e-50 200.7 114 80.7
Hma1.2p1_0384F.1_g140900 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 6.4e-50 200.7 116 82.8
CSS0041928 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 8.3e-50 200.3 118 78.8
Psat2g033040 Pisum sativum HOM05D001461 ORTHO05D005534 8.3e-50 200.3 114 84.2
Prupe.1G460500 Prunus persica HOM05D001461 ORTHO05D005534 1.9e-49 199.1 118 78.8
RcHm_v2.0_Chr6g0304921 Rosa chinensis HOM05D001461 ORTHO05D005534 1.9e-49 199.1 118 79.7
Thecc.03G290500 Theobroma cacao HOM05D001461 ORTHO05D005534 1.9e-49 199.1 118 78.8
MELO3C008160.2 Cucumis melo HOM05D001461 ORTHO05D005534 2.4e-49 198.7 118 81.4
CsaV3_2G033880 Cucumis sativus L. HOM05D001461 ORTHO05D005534 2.4e-49 198.7 118 81.4
FvH4_5g03750 Fragaria vesca HOM05D001461 ORTHO05D005534 2.4e-49 198.7 118 80.5
RcHm_v2.0_Chr7g0195901 Rosa chinensis HOM05D001461 ORTHO05D005534 3.2e-49 198.4 118 78.8
PGR042G3251 Punica granatum HOM05D001461 ORTHO05D005534 4.1e-49 198.0 116 78.4
ClCG11G007680 Citrullus lanatus HOM05D001461 ORTHO05D005534 5.4e-49 197.6 118 80.5
FAN13G1856 Fragaria x ananassa HOM05D001461 ORTHO05D005534 5.4e-49 197.6 118 79.7
Hma1.2p1_0397F.1_g143760 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 5.4e-49 197.6 115 80.9
Lsat_1_v5_gn_7_2481 Lactuca sativa HOM05D001461 ORTHO05D005534 7.0e-49 197.2 115 80.0
Potri.003G135100 Populus trichocarpa HOM05D001461 ORTHO05D005534 7.0e-49 197.2 116 81.9
MD15G1108200 Malus domestica HOM05D001461 ORTHO05D005534 9.2e-49 196.8 118 79.7
Duzib084G0256 Durio zibethinus HOM05D001461 ORTHO05D005534 1.2e-48 196.4 118 78.0
Glyma.11G019700 Glycine max HOM05D001461 ORTHO05D005534 1.2e-48 196.4 115 80.0
TPR.G6688 Trifolium pratense HOM05D001461 ORTHO05D005534 1.2e-48 196.4 114 81.6
FAN13G2166 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.6e-48 196.1 118 79.7
LjContig00312_ERROPOS870357g0027559 Lotus japonicus HOM05D001461 ORTHO05D005534 1.6e-48 196.1 116 81.0
CANSAT21G0685 Cannabis sativa HOM05D001461 ORTHO05D005534 2.0e-48 195.7 113 83.2
Nitab4.5_0002026g0080 Nicotiana tabacum HOM05D001461 ORTHO05D005534 2.7e-48 195.3 116 79.3
Solyc11g062280.2 Solanum lycopersicum HOM05D001461 ORTHO05D005534 2.7e-48 195.3 116 80.2
Sopen11g024260 Solanum pennellii HOM05D001461 ORTHO05D005534 2.7e-48 195.3 116 80.2
PGSC0003DMG401032495 Solanum tuberosum HOM05D001461 ORTHO05D005534 2.7e-48 195.3 116 80.2
Peaxi162Scf00029g02519 Petunia axillaris HOM05D001461 ORTHO05D005534 3.5e-48 194.9 116 79.3
GSVIVG01019462001 Vitis vinifera HOM05D001461 ORTHO05D002801 3.5e-48 194.9 116 80.2
Nn7g37350 Nelumbo nucifera HOM05D001461 ORTHO05D005534 1.0e-47 193.4 113 79.6
Phvul.002G161800 Phaseolus vulgaris HOM05D001461 ORTHO05D005534 1.0e-47 193.4 115 80.0
PGSC0003DMG400007048 Solanum tuberosum HOM05D001461 ORTHO05D005534 1.3e-47 193.0 116 78.4
EL10Ac1g00327 Beta vulgaris HOM05D001461 ORTHO05D005534 1.7e-47 192.6 118 76.3
Sed0013897 Sechium edule HOM05D001461 ORTHO05D005534 1.7e-47 192.6 118 78.0
AT5G41650 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 2.3e-47 192.2 118 78.0
HanXRQChr04g0120651 Helianthus annuus HOM05D001461 ORTHO05D005534 3.0e-47 191.8 116 75.9
LjContig00001g0001336 Lotus japonicus HOM05D001461 ORTHO05D005534 3.0e-47 191.8 118 78.0
LjContig00001g0023327 Lotus japonicus HOM05D001461 ORTHO05D005534 3.0e-47 191.8 118 78.0
Prupe.5G111900 Prunus persica HOM05D001461 ORTHO05D005534 3.9e-47 191.4 120 78.3
VMungo1215G2099 Vigna mungo HOM05D001461 ORTHO05D005534 3.9e-47 191.4 115 79.1
CAN.G375.83 Capsicum annuum HOM05D001461 ORTHO05D005534 5.0e-47 191.0 116 78.4
Gohir.A12G232000 Gossypium hirsutum HOM05D001461 ORTHO05D005534 5.0e-47 191.0 116 77.6
Gohir.D12G235300 Gossypium hirsutum HOM05D001461 ORTHO05D005534 5.0e-47 191.0 116 77.6
Gorai.008G251500 Gossypium raimondii HOM05D001461 ORTHO05D005534 5.0e-47 191.0 116 77.6
Cc03_g08310 Coffea canephora HOM05D001461 ORTHO05D005534 8.6e-47 190.3 118 79.7
MBI07_g06330_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 8.6e-47 190.3 115 79.1
Carub.0002s0062 Capsella rubella HOM05D001461 ORTHO05D005534 1.1e-46 189.9 119 76.5
Thecc.02G012600 Theobroma cacao HOM05D001461 ORTHO05D005534 1.5e-46 189.5 114 78.1
FAN18G4081 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.5e-46 188.7 115 76.5
MBI15_g19879_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 3.3e-46 188.3 115 78.3
AL2G10830 Arabidopsis lyrata HOM05D001461 ORTHO05D005534 4.3e-46 188.0 119 75.6
BcaC04g22537 Brassica carinata HOM05D001461 ORTHO05D005534 4.3e-46 188.0 119 76.5
C09p18050 Brassica napus HOM05D001461 ORTHO05D005534 4.3e-46 188.0 119 76.5
BolC9t54702H Brassica oleracea HOM05D001461 ORTHO05D005534 4.3e-46 188.0 119 76.5
CARHR212880 Cardamine hirsuta HOM05D001461 ORTHO05D005534 4.3e-46 188.0 116 76.7
Thhalv10023764m.g Eutrema salsugineum HOM05D001461 ORTHO05D005534 4.3e-46 188.0 119 76.5
Sabra03G0097400 Salix brachista HOM05D001461 ORTHO05D005534 4.3e-46 188.0 127 73.2
BcaB07g31442 Brassica carinata HOM05D001461 ORTHO05D005534 7.3e-46 187.2 119 75.6
BcaB07g31521 Brassica carinata HOM05D001461 ORTHO05D005534 7.3e-46 187.2 119 75.6
Aa31LG2G1220 Aethionema arabicum HOM05D001461 ORTHO05D002801 9.5e-46 186.8 119 75.6
CARHR046740 Cardamine hirsuta HOM05D001461 ORTHO05D005534 9.5e-46 186.8 117 76.1
ECA236G4284 Erigeron canadensis HOM05D001461 ORTHO05D005534 9.5e-46 186.8 116 75.9
DCAR_025235 Daucus carota HOM05D001461 ORTHO05D005534 1.2e-45 186.4 114 75.4
ECA233G4373 Erigeron canadensis HOM05D001461 ORTHO05D005534 1.2e-45 186.4 115 78.3
Thhalv10027655m.g Eutrema salsugineum HOM05D001461 ORTHO05D002801 1.2e-45 186.4 117 76.1
A09p14930 Brassica napus HOM05D001461 ORTHO05D005534 1.6e-45 186.0 119 74.8
BraA09t37138Z Brassica rapa HOM05D001461 ORTHO05D005534 1.6e-45 186.0 119 74.8
A09p14170 Brassica napus HOM05D001461 ORTHO05D005534 2.1e-45 185.7 119 74.8
BraA09t37065Z Brassica rapa HOM05D001461 ORTHO05D005534 2.1e-45 185.7 119 74.8
Eucgr.E00823 Eucalyptus grandis HOM05D001461 ORTHO05D005534 2.8e-45 185.3 116 74.1
AT1G64185 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 3.6e-45 184.9 119 74.8
C09p17080 Brassica napus HOM05D001461 ORTHO05D005534 6.2e-45 184.1 119 73.9
BolC9t54606H Brassica oleracea HOM05D001461 ORTHO05D005534 6.2e-45 184.1 119 73.9
Zm00001eb376190 Zea mays HOM05D001461 ORTHO05D005534 1.8e-44 182.6 119 73.1
Zm00001eb376220 Zea mays HOM05D001461 ORTHO05D005534 1.8e-44 182.6 119 73.1
Zm00001eb376310 Zea mays HOM05D001461 ORTHO05D005534 1.8e-44 182.6 119 73.1
Zm00001eb376910 Zea mays HOM05D001461 ORTHO05D005534 1.8e-44 182.6 119 73.1
Zm00001eb376940 Zea mays HOM05D001461 ORTHO05D005534 1.8e-44 182.6 119 73.1
ATR0580G205 Amborella trichopoda HOM05D001461 ORTHO05D005534 2.3e-44 182.2 114 77.2
AUR62004435 Chenopodium quinoa HOM05D001461 ORTHO05D005534 2.3e-44 182.2 118 71.2
AUR62023513 Chenopodium quinoa HOM05D001461 ORTHO05D005534 2.3e-44 182.2 118 71.2
Zm00001eb376350 Zea mays HOM05D001461 ORTHO05D005534 5.2e-44 181.0 119 72.3
Zm00001eb376260 Zea mays HOM05D001461 ORTHO05D005534 8.9e-44 180.3 119 72.3
Aqoxy6G01758 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 1.2e-43 179.9 114 76.3
Os06g0158700 Oryza sativa ssp. japonica HOM05D001461 ORTHO05D005534 2.0e-43 179.1 118 71.2
PSO384G4702 Papaver somniferum HOM05D001461 ORTHO05D005534 2.0e-43 179.1 121 71.1
Aqoxy6G01756 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 7.5e-43 177.2 114 75.4
Sed0026937 Sechium edule HOM05D001461 ORTHO05D005534 7.5e-43 177.2 118 73.7
Lj4g0014781 Lotus japonicus HOM05D001461 ORTHO05D005534 1.7e-42 176.0 116 76.7
Sc01g0003060 Simmondsia chinensis HOM05D001461 ORTHO05D005534 1.7e-42 176.0 116 74.1
SEGI_29517 Sequoiadendron giganteum HOM05D001461 ORTHO05D005534 2.2e-42 175.6 116 69.0
Rhsim07G0008500 Rhododendron simsii HOM05D001461 ORTHO05D005534 2.9e-42 175.3 166 56.6
Sc01g0010020 Simmondsia chinensis HOM05D001461 ORTHO05D005534 4.9e-42 174.5 117 70.9
Migut.E01261 Erythranthe guttata HOM05D001461 ORTHO05D005534 3.2e-41 171.8 99 85.9
Lsat_1_v5_gn_5_108040 Lactuca sativa HOM05D001461 ORTHO05D005534 3.2e-41 171.8 114 73.7
CSS0015159 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 5.4e-41 171.0 100 82.0
CSS0025412 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 5.4e-41 171.0 100 82.0
BcaC04g22646 Brassica carinata HOM05D001461 ORTHO05D005534 6.0e-40 167.5 135 64.4
Carub.0007s3383 Capsella rubella HOM05D001461 ORTHO05D005534 1.3e-39 166.4 118 68.6
Nitab4.5_0000492g0140 Nicotiana tabacum HOM05D001461 ORTHO05D005534 1.1e-38 163.3 98 80.6
HPP92_002836 Vanilla planifolia HOM05D001461 ORTHO05D005534 1.9e-38 162.5 100 75.0
FvH4_5g27350 Fragaria vesca HOM05D001461 ORTHO05D005534 2.5e-38 162.2 97 79.4
FAN28G0268 Fragaria x ananassa HOM05D001461 ORTHO05D005534 4.3e-38 161.4 97 78.4
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 7.3e-38 160.6 101 75.2
TPR.G32972 Trifolium pratense HOM05D001461 ORTHO05D005534 7.3e-38 160.6 96 78.1
Lj4g0009029 Lotus japonicus HOM05D001461 ORTHO05D005534 8.1e-37 157.1 118 67.8
SMO364G0470 Selaginella moellendorffii HOM05D001461 ORTHO05D005534 5.2e-36 154.5 115 60.9
Nitab4.5_0004629g0090 Nicotiana tabacum HOM05D001461 ORTHO05D005534 4.4e-35 151.4 120 65.8
Pp3c1_2350 Physcomitrium patens HOM05D001461 ORTHO05D005534 9.9e-35 150.2 111 61.3
AagrBONN_evm.TU.Sc2ySwM_344.4522 Anthoceros agrestis HOM05D001461 ORTHO05D005534 1.7e-34 149.4 114 61.4
Hund27230 Selenicereus undatus HOM05D001461 ORTHO05D005534 1.4e-33 146.4 100 74.0
Mapoly0143s0026 Marchantia polymorpha HOM05D001461 ORTHO05D005534 6.6e-31 137.5 115 53.9
Ah.07g196880 Amaranthus hybridus HOM05D001461 ORTHO05D005534 3.3e-30 135.2 101 66.3
MD08G1128900 Malus domestica HOM05D001461 ORTHO05D005534 1.6e-29 132.9 97 69.1
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 7.1e-25 117.5 64 84.4
arahy.Tifrunner.gnm1.ann1.F4HMTZ Arachis hypogaea HOM05D001461 ORTHO05D005534 1.1e-22 110.2 56 91.1
Lj9C594G4 Lonicera japonica HOM05D001461 ORTHO05D005534 3.3e-22 108.6 66 74.2
vmacro13208 Vaccinium macrocarpon HOM05D001461 ORTHO05D005534 3.3e-22 108.6 61 82.0
Zm00001eb376320 Zea mays HOM05D001461 ORTHO05D005534 5.6e-22 107.8 122 46.7
arahy.Tifrunner.gnm1.ann1.NAT0LD Arachis hypogaea HOM05D001461 ORTHO05D005534 7.3e-22 107.5 56 89.3
FAN13G0962 Fragaria x ananassa HOM05D001461 ORTHO05D005534 9.6e-22 107.1 64 76.6
Ciclev10022889m.g Citrus clementina HOM05D001461 ORTHO05D005534 2.8e-21 105.5 64 79.7
RcHm_v2.0_Chr5g0061641 Rosa chinensis HOM05D001461 ORTHO05D005534 2.8e-21 105.5 59 83.1
Glyma.06G264500 Glycine max HOM05D001461 ORTHO05D005534 8.1e-21 104.0 63 76.2
Glyma.05G213500 Glycine max HOM05D001461 ORTHO05D005534 3.1e-20 102.1 61 78.7
Zm00001eb376250 Zea mays HOM05D001461 ORTHO05D005534 9.0e-20 100.5 64 73.4
Oeu063667.1 Olea europaea HOM05D001461 ORTHO05D005534 9.9e-19 97.1 55 81.8
MD08G1130100 Malus domestica HOM05D001461 ORTHO05D005534 1.3e-18 96.7 160 40.6
arahy.Tifrunner.gnm1.ann1.2LVS12 Arachis hypogaea HOM05D001461 ORTHO05D005534 1.7e-18 96.3 53 83.0
QL02p032078 Quercus lobata HOM05D001461 ORTHO05D005534 2.2e-18 95.9 54 83.3
PRCOL_00003773 Prasinoderma coloniale HOM05D001461 ORTHO05D005534 8.4e-18 94.0 137 38.7
MCO07G452 Micromonas commoda HOM05D001461 ORTHO05D005534 1.1e-17 93.6 132 39.4
Actinidia28489 Actinidia chinensis HOM05D001461 ORTHO05D005534 1.9e-17 92.8 107 50.5
Cfa012281 Carpinus fangiana HOM05D001461 ORTHO05D005534 7.1e-17 90.9 53 81.1
MD14G1117200 Malus domestica HOM05D001461 ORTHO05D005534 3.5e-16 88.6 53 75.5
Solyc07g061860.3 Solanum lycopersicum HOM05D001461 ORTHO05D051078 4.5e-11 71.6 72 51.4
Glyma.08G020100 Glycine max HOM05D001461 ORTHO05D005534 1.3e-10 70.1 52 67.3
Sopen07g030150 Solanum pennellii HOM05D018748 ORTHO05D009630 9.3e-09 63.9 35 85.7


User provided reference genes

Program Settings