Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G02258 Striga asiatica HOM05D007026 ORTHO05D008493 4.4e-150 534.6 279 100.0
MSTRG.28077 Avicennia marina HOM05D007026 ORTHO05D008493 3.7e-80 302.4 299 62.9
Migut.N01474 Erythranthe guttata HOM05D007026 ORTHO05D008493 3.3e-73 279.3 285 60.7
Migut.A00762 Erythranthe guttata HOM05D007026 ORTHO05D008493 2.6e-62 243.0 198 71.2
Cc02_g27730 Coffea canephora HOM05D007026 ORTHO05D008493 5.0e-61 238.8 203 67.5
Hma1.2p1_0293F.1_g116330 Hydrangea macrophylla HOM05D007026 ORTHO05D008493 8.5e-61 238.0 299 51.8
unitig_0.g1578 Utricularia gibba HOM05D007026 ORTHO05D008493 1.7e-56 223.8 167 70.1
Thecc.01G412700 Theobroma cacao HOM05D007026 ORTHO05D008493 8.2e-56 221.5 174 69.5
Lsat_1_v5_gn_1_108360 Lactuca sativa HOM05D007026 ORTHO05D008493 3.1e-55 219.5 291 51.5
Cfa010744 Carpinus fangiana HOM05D007026 ORTHO05D008493 4.1e-55 219.2 206 60.2
Solyc03g115460.3 Solanum lycopersicum HOM05D007026 ORTHO05D008493 5.3e-55 218.8 177 65.0
Sopen03g034460 Solanum pennellii HOM05D007026 ORTHO05D008493 5.3e-55 218.8 177 65.5
PGSC0003DMG400024551 Solanum tuberosum HOM05D007026 ORTHO05D008493 7.0e-55 218.4 206 60.7
QL04p005492 Quercus lobata HOM05D007026 ORTHO05D008493 9.1e-55 218.0 296 48.6
vmacro21182 Vaccinium macrocarpon HOM05D007026 ORTHO05D008493 9.1e-55 218.0 289 49.5
DCAR_029660 Daucus carota HOM05D007026 ORTHO05D008493 2.0e-54 216.9 193 61.1
Rhsim01G0130400 Rhododendron simsii HOM05D007026 ORTHO05D008493 4.5e-54 215.7 182 64.3
PGR044G0728 Punica granatum HOM05D007026 ORTHO05D008493 5.9e-54 215.3 186 64.0
Prupe.2G010600 Prunus persica HOM05D007026 ORTHO05D008493 7.7e-54 214.9 271 50.2
MD07G1007900 Malus domestica HOM05D007026 ORTHO05D008493 1.3e-53 214.2 197 62.4
Peaxi162Scf00428g00077 Petunia axillaris HOM05D007026 ORTHO05D008493 1.3e-53 214.2 279 50.2
TWI09G0295 Tripterygium wilfordii HOM05D007026 ORTHO05D008493 2.2e-53 213.4 307 47.6
ECA248G3415 Erigeron canadensis HOM05D007026 ORTHO05D008493 3.8e-53 212.6 245 53.5
Actinidia21558 Actinidia chinensis HOM05D007026 ORTHO05D008493 5.0e-53 212.2 161 70.8
Gohir.D08G166400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 1.1e-52 211.1 196 62.8
Gorai.004G173800 Gossypium raimondii HOM05D007026 ORTHO05D008493 1.1e-52 211.1 196 62.8
Lalb_Chr03g0033971 Lupinus albus HOM05D007026 ORTHO05D008493 1.9e-52 210.3 203 60.6
Potri.009G063700 Populus trichocarpa HOM05D007026 ORTHO05D008493 2.5e-52 209.9 178 64.6
Sabra09G0047000 Salix brachista HOM05D007026 ORTHO05D008493 2.5e-52 209.9 165 68.5
CSS0028033 Camellia sinensis var. sinensis HOM05D007026 ORTHO05D008493 3.2e-52 209.5 278 48.6
MD02G1314200 Malus domestica HOM05D007026 ORTHO05D008493 3.2e-52 209.5 187 61.0
Nitab4.5_0002881g0080 Nicotiana tabacum HOM05D007026 ORTHO05D008493 7.2e-52 208.4 251 52.6
TAR623G0027 Trochodendron aralioides HOM05D007026 ORTHO05D008493 9.4e-52 208.0 188 61.2
Lj3g0000564 Lotus japonicus HOM05D007026 ORTHO05D008493 1.2e-51 207.6 146 73.3
Manes.10G145400 Manihot esculenta HOM05D007026 ORTHO05D008493 1.6e-51 207.2 176 63.6
Medtr8g036520 Medicago truncatula HOM05D007026 ORTHO05D008493 3.6e-51 206.1 157 68.8
CsaV3_7G031200 Cucumis sativus L. HOM05D007026 ORTHO05D008493 4.7e-51 205.7 294 46.3
Cpa.g.sc245.8 Carica papaya HOM05D007026 ORTHO05D008493 6.1e-51 205.3 228 54.4
THA.LOC104826673 Tarenaya hassleriana HOM05D007026 ORTHO05D008493 6.1e-51 205.3 172 61.6
Atru.chr11.2644 Acer truncatum HOM05D007026 ORTHO05D008493 8.0e-51 204.9 286 49.0
MELO3C023538.2 Cucumis melo HOM05D007026 ORTHO05D008493 2.3e-50 203.4 287 44.6
Potri.001G269000 Populus trichocarpa HOM05D007026 ORTHO05D008493 3.0e-50 203.0 186 61.8
Duzib268G1513 Durio zibethinus HOM05D007026 ORTHO05D008493 5.2e-50 202.2 163 65.6
Psat4g148320 Pisum sativum HOM05D007026 ORTHO05D008493 5.2e-50 202.2 266 49.2
Nn2g15423 Nelumbo nucifera HOM05D007026 ORTHO05D008493 6.8e-50 201.8 311 46.0
RcHm_v2.0_Chr1g0315651 Rosa chinensis HOM05D007026 ORTHO05D008493 6.8e-50 201.8 273 49.5
TAR623G1735 Trochodendron aralioides HOM05D007026 ORTHO05D008493 8.8e-50 201.4 305 47.2
arahy.Tifrunner.gnm1.ann1.VL74DI Arachis hypogaea HOM05D007026 ORTHO05D008493 1.2e-49 201.1 208 55.8
CANSAT80G1756 Cannabis sativa HOM05D007026 ORTHO05D008493 2.0e-49 200.3 232 52.2
ClCG09G004280 Citrullus lanatus HOM05D007026 ORTHO05D008493 2.6e-49 199.9 295 44.7
Haze_03229 Corylus avellana HOM05D007026 ORTHO05D008493 2.6e-49 199.9 189 60.8
FAN03G2284 Fragaria x ananassa HOM05D007026 ORTHO05D008493 3.4e-49 199.5 257 49.8
Sc11g0009270 Simmondsia chinensis HOM05D007026 ORTHO05D008493 5.7e-49 198.7 278 46.4
Ciclev10032288m.g Citrus clementina HOM05D007026 ORTHO05D008493 7.5e-49 198.4 297 47.1
HanXRQChr06g0185391 Helianthus annuus HOM05D007026 ORTHO05D008493 1.7e-48 197.2 278 46.4
FAN06G1399 Fragaria x ananassa HOM05D007026 ORTHO05D008493 3.7e-48 196.1 290 48.3
FAN10G3680 Fragaria x ananassa HOM05D007026 ORTHO05D008493 5.4e-47 192.2 290 47.9
Lj7P569T60 Lonicera japonica HOM05D007026 ORTHO05D008493 1.6e-46 190.7 171 57.3
Phvul.011G212500 Phaseolus vulgaris HOM05D007026 ORTHO05D008493 1.7e-45 187.2 219 50.7
Glyma.13G204000 Glycine max HOM05D007026 ORTHO05D008493 2.3e-45 186.8 215 52.1
VMungo1127G0427 Vigna mungo HOM05D007026 ORTHO05D008493 2.3e-45 186.8 216 51.9
Aqoxy1G00217 Aquilegia oxysepala HOM05D007026 ORTHO05D008493 1.9e-44 183.7 260 45.8
Sed0012425 Sechium edule HOM05D007026 ORTHO05D008493 1.9e-44 183.7 280 44.6
AT3G12650 Arabidopsis thaliana HOM05D007026 ORTHO05D008493 4.7e-43 179.1 169 56.8
Nitab4.5_0005198g0030 Nicotiana tabacum HOM05D007026 ORTHO05D008493 6.8e-42 175.3 150 62.0
MBI01_g27619_MAGBIO Magnolia biondii HOM05D007026 ORTHO05D008493 1.2e-41 174.5 153 56.9
AL3G24320 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 1.5e-41 174.1 170 56.5
BcaC01g04025 Brassica carinata HOM05D007026 ORTHO05D008493 1.5e-41 174.1 161 58.4
C03p45790 Brassica napus HOM05D007026 ORTHO05D008493 1.5e-41 174.1 161 58.4
BolC3t16854H Brassica oleracea HOM05D007026 ORTHO05D008493 1.5e-41 174.1 161 58.4
Carub.0003s1200 Capsella rubella HOM05D007026 ORTHO05D008493 2.0e-41 173.7 170 55.3
PSO339G4493 Papaver somniferum HOM05D007026 ORTHO05D008493 4.4e-41 172.6 294 43.2
COL.COLO4_23920 Corchorus olitorius HOM05D007026 ORTHO05D008493 1.3e-40 171.0 158 57.0
Dinv09365 Davidia involucrata HOM05D007026 ORTHO05D008493 1.3e-40 171.0 255 47.5
SHI26926 Sapria himalayana HOM05D007026 ORTHO05D008493 1.3e-40 171.0 160 60.6
Sp3g10790 Schrenkiella parvula HOM05D007026 ORTHO05D008493 1.7e-40 170.6 155 59.4
A03p37740 Brassica napus HOM05D007026 ORTHO05D008493 6.3e-40 168.7 207 50.2
BraA03t12929Z Brassica rapa HOM05D007026 ORTHO05D008493 6.3e-40 168.7 207 50.2
Dinv43456 Davidia involucrata HOM05D007026 ORTHO05D008493 6.3e-40 168.7 254 47.2
Actinidia20675 Actinidia chinensis HOM05D007026 ORTHO05D008493 8.3e-40 168.3 152 61.8
CARHR087160 Cardamine hirsuta HOM05D007026 ORTHO05D008493 8.3e-40 168.3 214 48.1
ATR0605G064 Amborella trichopoda HOM05D007026 ORTHO05D008493 1.8e-39 167.2 196 51.0
Thhalv10021417m.g Eutrema salsugineum HOM05D007026 ORTHO05D008493 3.1e-39 166.4 168 56.0
HPP92_022795 Vanilla planifolia HOM05D007026 ORTHO05D008493 4.1e-39 166.0 161 54.7
BcaB04g18713 Brassica carinata HOM05D007026 ORTHO05D008493 5.4e-39 165.6 205 50.7
A05p36850 Brassica napus HOM05D007026 ORTHO05D008493 9.2e-39 164.9 210 50.5
BcaB06g25527 Brassica carinata HOM05D007026 ORTHO05D008493 7.8e-38 161.8 231 45.9
BraA05t22486Z Brassica rapa HOM05D007026 ORTHO05D008493 1.3e-37 161.0 210 49.5
Aa31LG3G20 Aethionema arabicum HOM05D007026 ORTHO05D008493 1.7e-37 160.6 234 44.4
RcHm_v2.0_Chr1g0315191 Rosa chinensis HOM05D007026 ORTHO05D008493 2.9e-37 159.8 111 72.1
RcHm_v2.0_Chr1g0315371 Rosa chinensis HOM05D007026 ORTHO05D008493 8.6e-37 158.3 111 71.2
RcHm_v2.0_Chr1g0315521 Rosa chinensis HOM05D007026 ORTHO05D008493 2.5e-36 156.8 111 71.2
Gohir.A08G145400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 2.8e-35 153.3 162 55.6
RcHm_v2.0_Chr1g0315011 Rosa chinensis HOM05D007026 ORTHO05D008493 8.0e-35 151.8 111 70.3
EL10Ac2g04312 Beta vulgaris HOM05D007026 ORTHO05D008493 1.4e-34 151.0 181 47.0
FvH4_7g00860 Fragaria vesca HOM05D007026 ORTHO05D008493 1.7e-32 144.1 251 45.0
Eucgr.J01262 Eucalyptus grandis HOM05D007026 ORTHO05D008493 7.0e-31 138.7 117 59.0
PSO384G4663 Papaver somniferum HOM05D007026 ORTHO05D008493 8.6e-29 131.7 251 41.4
Zm00001eb189290 Zea mays HOM05D007026 ORTHO05D008493 1.9e-28 130.6 208 43.3
BcaC05g29251 Brassica carinata HOM05D007026 ORTHO05D008493 3.3e-28 129.8 163 50.9
BolC5t34196H Brassica oleracea HOM05D007026 ORTHO05D008493 3.6e-27 126.3 116 58.6
Os02g0718000 Oryza sativa ssp. japonica HOM05D007026 ORTHO05D008493 3.1e-26 123.2 211 41.2
BcaB08g35591 Brassica carinata HOM05D007026 ORTHO05D008493 6.0e-22 109.0 144 48.6
Nitab4.5_0004511g0060 Nicotiana tabacum HOM05D007026 ORTHO05D008493 1.1e-20 104.8 68 73.5
AUR62009374 Chenopodium quinoa HOM05D007026 ORTHO05D008493 5.6e-20 102.4 111 47.7
Pp3c2_10070 Physcomitrium patens HOM05D007026 ORTHO05D008493 2.2e-16 90.5 150 39.3
AL7G43500 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 6.0e-14 82.4 105 46.7
TPR.G17515 Trifolium pratense HOM05D007026 ORTHO05D008493 1.0e-13 81.6 229 33.6
Nitab4.5_0000052g0150 Nicotiana tabacum HOM05D007026 ORTHO05D008493 1.3e-13 81.3 86 57.0
SMO147G0317 Selaginella moellendorffii HOM05D007026 ORTHO05D008493 1.7e-13 80.9 127 37.8
Mapoly0153s0019 Marchantia polymorpha HOM05D007026 ORTHO05D008493 1.1e-10 71.6 131 35.1
C05p55310 Brassica napus HOM05D007026 ORTHO05D008493 5.8e-09 65.9 49 69.4
AUR62044089 Chenopodium quinoa HOM05D005782 ORTHO05D007436 4.1e-07 59.7 52 51.9
Aqoxy1G00218 Aquilegia oxysepala HOM05D000196 ORTHO05D000279 3.5e-06 56.6 266 24.8


User provided reference genes

Program Settings