Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G02243 Striga asiatica HOM05D006442 ORTHO05D007980 2.9e-75 285.0 133 100.0
SGA_v2.0_scaffold10G05439 Striga asiatica HOM05D006442 ORTHO05D007980 1.1e-71 273.1 133 94.7
MSTRG.28085 Avicennia marina HOM05D006442 ORTHO05D007980 2.2e-59 232.3 133 81.2
Migut.N01489 Erythranthe guttata HOM05D006442 ORTHO05D007980 9.4e-58 226.9 133 77.4
Oeu064276.1 Olea europaea HOM05D006442 ORTHO05D007980 2.7e-57 225.3 133 78.2
Cfa010728 Carpinus fangiana HOM05D006442 ORTHO05D007980 7.9e-57 223.8 133 77.4
MD07G1004900 Malus domestica HOM05D006442 ORTHO05D007980 7.9e-57 223.8 133 75.9
CSS0016496 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 3.0e-56 221.9 133 75.2
Cc02_g27340 Coffea canephora HOM05D006442 ORTHO05D007980 3.9e-56 221.5 133 75.2
CSS0031684 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 5.1e-56 221.1 130 76.2
Prupe.2G007200 Prunus persica HOM05D006442 ORTHO05D007980 5.1e-56 221.1 133 75.2
arahy.Tifrunner.gnm1.ann1.9R1925 Arachis hypogaea HOM05D006442 ORTHO05D007980 6.7e-56 220.7 130 76.2
arahy.Tifrunner.gnm1.ann1.A55RA3 Arachis hypogaea HOM05D006442 ORTHO05D007980 6.7e-56 220.7 130 76.2
Dinv43911 Davidia involucrata HOM05D006442 ORTHO05D007980 6.7e-56 220.7 133 75.2
FvH4_7g00510 Fragaria vesca HOM05D006442 ORTHO05D007980 6.7e-56 220.7 133 75.9
FAN06G2479 Fragaria x ananassa HOM05D006442 ORTHO05D007980 6.7e-56 220.7 133 75.9
FAN10G1890 Fragaria x ananassa HOM05D006442 ORTHO05D007980 6.7e-56 220.7 133 75.9
FAN03G1462 Fragaria x ananassa HOM05D006442 ORTHO05D007980 1.5e-55 219.5 133 75.2
Haze_03245 Corylus avellana HOM05D006442 ORTHO05D007980 2.5e-55 218.8 133 75.2
Cc02_g27370 Coffea canephora HOM05D006442 ORTHO05D007980 5.7e-55 217.6 133 75.2
Glyma.15G271700 Glycine max HOM05D006442 ORTHO05D007980 7.4e-55 217.2 130 74.6
RcHm_v2.0_Chr1g0314301 Rosa chinensis HOM05D006442 ORTHO05D007980 7.4e-55 217.2 133 74.4
TWI09G1159 Tripterygium wilfordii HOM05D006442 ORTHO05D007980 7.4e-55 217.2 130 75.4
Potri.001G225500 Populus trichocarpa HOM05D006442 ORTHO05D007980 1.3e-54 216.5 133 73.7
Manes.10G148300 Manihot esculenta HOM05D006442 ORTHO05D007980 4.8e-54 214.5 133 75.9
Aqoxy1G00188 Aquilegia oxysepala HOM05D006442 ORTHO05D007980 6.3e-54 214.2 133 73.7
Rhsim07G0053100 Rhododendron simsii HOM05D006442 ORTHO05D007980 8.2e-54 213.8 133 75.2
Lsat_1_v5_gn_8_7620 Lactuca sativa HOM05D006442 ORTHO05D007980 1.1e-53 213.4 130 73.1
SalBow5G2051 Salvia bowleyana HOM05D006442 ORTHO05D007980 1.1e-53 213.4 130 75.4
TPR.G12183 Trifolium pratense HOM05D006442 ORTHO05D007980 1.4e-53 213.0 130 72.3
HanXRQChr01g0018511 Helianthus annuus HOM05D006442 ORTHO05D007980 1.8e-53 212.6 130 73.1
Ah.16g101020 Amaranthus hybridus HOM05D006442 ORTHO05D007980 3.1e-53 211.8 130 72.3
Lj3g0007274 Lotus japonicus HOM05D006442 ORTHO05D007980 4.1e-53 211.5 130 72.3
GSVIVG01032037001 Vitis vinifera HOM05D006442 ORTHO05D007980 4.1e-53 211.5 133 72.9
CAN.G1110.8 Capsicum annuum HOM05D006442 ORTHO05D007980 5.3e-53 211.1 133 70.7
DCAR_006304 Daucus carota HOM05D006442 ORTHO05D007980 6.9e-53 210.7 133 72.9
Oeu013593.2 Olea europaea HOM05D006442 ORTHO05D007980 6.9e-53 210.7 133 72.2
Ciclev10033058m.g Citrus clementina HOM05D006442 ORTHO05D007980 9.1e-53 210.3 133 72.2
PGR042G3140 Punica granatum HOM05D006442 ORTHO05D007980 9.1e-53 210.3 133 72.2
Nn2g15582 Nelumbo nucifera HOM05D006442 ORTHO05D007980 1.2e-52 209.9 129 74.4
Sabra16G0134100 Salix brachista HOM05D006442 ORTHO05D007980 1.2e-52 209.9 133 72.2
Nitab4.5_0002012g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 1.5e-52 209.5 133 71.4
Solyc10g037980.2 Solanum lycopersicum HOM05D006442 ORTHO05D007980 1.5e-52 209.5 130 72.3
PGSC0003DMG400026375 Solanum tuberosum HOM05D006442 ORTHO05D007980 1.5e-52 209.5 130 72.3
VMungo1080G0430 Vigna mungo HOM05D006442 ORTHO05D007980 1.5e-52 209.5 129 72.1
Actinidia21568 Actinidia chinensis HOM05D006442 ORTHO05D007980 2.0e-52 209.1 129 72.9
ECA248G1263 Erigeron canadensis HOM05D006442 ORTHO05D007980 2.0e-52 209.1 133 71.4
Glyma.08G151500 Glycine max HOM05D006442 ORTHO05D007980 2.0e-52 209.1 130 72.3
CiPaw.12G060500 Carya illinoinensis HOM05D006442 ORTHO05D007980 3.4e-52 208.4 132 72.7
Nn7g36056 Nelumbo nucifera HOM05D006442 ORTHO05D007980 4.5e-52 208.0 133 72.2
Peaxi162Scf00045g00327 Petunia axillaris HOM05D006442 ORTHO05D007980 4.5e-52 208.0 133 69.2
VMungo1080G0583 Vigna mungo HOM05D006442 ORTHO05D007980 4.5e-52 208.0 130 71.5
Actinidia20688 Actinidia chinensis HOM05D006442 ORTHO05D007980 5.9e-52 207.6 129 73.6
Hma1.2p1_0010F.1_g007050 Hydrangea macrophylla HOM05D006442 ORTHO05D007980 5.9e-52 207.6 130 70.8
Medtr3g027090 Medicago truncatula HOM05D006442 ORTHO05D007980 5.9e-52 207.6 130 71.5
Eucgr.G03402 Eucalyptus grandis HOM05D006442 ORTHO05D007980 7.7e-52 207.2 133 69.9
Atru.chr11.2670 Acer truncatum HOM05D006442 ORTHO05D007980 1.7e-51 206.1 130 71.5
Duzib133G0004 Durio zibethinus HOM05D006442 ORTHO05D007980 1.7e-51 206.1 132 72.0
Sopen10g011600 Solanum pennellii HOM05D006442 ORTHO05D007980 1.7e-51 206.1 130 71.5
AUR62009476 Chenopodium quinoa HOM05D006442 ORTHO05D007980 2.2e-51 205.7 129 71.3
Gohir.D09G099100 Gossypium hirsutum HOM05D006442 ORTHO05D007980 2.2e-51 205.7 132 72.7
Gorai.006G116100 Gossypium raimondii HOM05D006442 ORTHO05D007980 2.2e-51 205.7 132 72.7
Phvul.005G037200 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 2.2e-51 205.7 130 70.8
Gohir.A09G099700 Gossypium hirsutum HOM05D006442 ORTHO05D007980 3.8e-51 204.9 135 71.9
CANSAT01G1452 Cannabis sativa HOM05D006442 ORTHO05D007980 5.0e-51 204.5 133 72.9
AUR62023154 Chenopodium quinoa HOM05D006442 ORTHO05D007980 5.0e-51 204.5 129 70.5
TAR633G2790 Trochodendron aralioides HOM05D006442 ORTHO05D007980 5.0e-51 204.5 129 70.5
Sc14g0005190 Simmondsia chinensis HOM05D006442 ORTHO05D007980 6.5e-51 204.1 130 69.2
Phvul.005G038700 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 1.4e-50 203.0 129 71.3
QL04p004786 Quercus lobata HOM05D006442 ORTHO05D007980 3.2e-50 201.8 174 58.6
Sed0019847 Sechium edule HOM05D006442 ORTHO05D007980 5.5e-50 201.1 134 68.7
unitig_22.g5766 Utricularia gibba HOM05D006442 ORTHO05D007980 9.4e-50 200.3 131 69.5
Lalb_Chr25g0283271 Lupinus albus HOM05D006442 ORTHO05D007980 1.6e-49 199.5 130 68.5
COL.COLO4_23906 Corchorus olitorius HOM05D006442 ORTHO05D007980 2.1e-49 199.1 134 71.6
CDE07G0477 Ceratophyllum demersum HOM05D006442 ORTHO05D007980 2.7e-49 198.7 130 68.5
EL10Ac2g04436 Beta vulgaris HOM05D006442 ORTHO05D007980 3.6e-49 198.4 130 67.7
Psat5g207000 Pisum sativum HOM05D006442 ORTHO05D007980 1.0e-48 196.8 130 67.7
CAN.G1076.12 Capsicum annuum HOM05D006442 ORTHO05D007980 2.6e-47 192.2 133 67.7
Thecc.01G414800 Theobroma cacao HOM05D006442 ORTHO05D007980 4.4e-47 191.4 132 71.2
THA.LOC104823024 Tarenaya hassleriana HOM05D006442 ORTHO05D007980 6.3e-46 187.6 133 64.7
PSO384G2221 Papaver somniferum HOM05D006442 ORTHO05D007980 3.1e-45 185.3 130 65.4
PSO339G0425 Papaver somniferum HOM05D006442 ORTHO05D007980 4.1e-45 184.9 130 64.6
AUR62009477 Chenopodium quinoa HOM05D006442 ORTHO05D007980 3.5e-44 181.8 129 62.8
AUR62023155 Chenopodium quinoa HOM05D006442 ORTHO05D007980 1.3e-43 179.9 129 63.6
Atru.chr11.2672 Acer truncatum HOM05D006442 ORTHO05D007980 1.1e-42 176.8 113 72.6
BcaC06g31744 Brassica carinata HOM05D006442 ORTHO05D007980 5.5e-42 174.5 131 61.1
Sp2g07550 Schrenkiella parvula HOM05D006442 ORTHO05D007980 4.7e-41 171.4 133 59.4
BcaC02g10802 Brassica carinata HOM05D006442 ORTHO05D007980 2.3e-40 169.1 131 58.8
A06p48230 Brassica napus HOM05D006442 ORTHO05D007980 2.3e-40 169.1 131 58.8
C04p24990 Brassica napus HOM05D006442 ORTHO05D007980 2.3e-40 169.1 131 58.8
BolC4t23999H Brassica oleracea HOM05D006442 ORTHO05D007980 2.3e-40 169.1 131 58.8
BraA06t27691Z Brassica rapa HOM05D006442 ORTHO05D007980 2.3e-40 169.1 131 58.8
AL8G18110 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 3.0e-40 168.7 131 58.8
Thhalv10003289m.g Eutrema salsugineum HOM05D006442 ORTHO05D007980 3.0e-40 168.7 131 61.1
ATR0605G011 Amborella trichopoda HOM05D006442 ORTHO05D007980 3.9e-40 168.3 130 58.5
AT5G42850 Arabidopsis thaliana HOM05D006442 ORTHO05D007980 6.7e-40 167.5 131 58.8
Carub.0008s0607 Capsella rubella HOM05D006442 ORTHO05D007980 3.3e-39 165.2 131 57.3
Ca_27853_v3 Cicer arietinum L. HOM05D006442 ORTHO05D007980 9.7e-39 163.7 224 41.1
HPP92_018950 Vanilla planifolia HOM05D006442 ORTHO05D007980 3.7e-38 161.8 131 58.8
CARHR181310 Cardamine hirsuta HOM05D006442 ORTHO05D007980 1.1e-37 160.2 133 56.4
SEGI_10267 Sequoiadendron giganteum HOM05D006442 ORTHO05D007980 1.4e-37 159.8 129 53.5
Mapoly0028s0130 Marchantia polymorpha HOM05D006442 ORTHO05D007980 5.3e-37 157.9 130 54.6
Glyma.08G152300 Glycine max HOM05D006442 ORTHO05D007980 1.6e-36 156.4 130 56.2
Aa31LG8G5740 Aethionema arabicum HOM05D000097 ORTHO05D000041 1.7e-35 152.9 132 56.1
vmacro13638 Vaccinium macrocarpon HOM05D006442 ORTHO05D007980 5.0e-35 151.4 156 50.6
AagrBONN_evm.TU.Sc2ySwM_117.1593 Anthoceros agrestis HOM05D006442 ORTHO05D007980 1.2e-33 146.7 129 51.9
Os06g0320000 Oryza sativa ssp. japonica HOM05D006442 ORTHO05D007980 4.7e-33 144.8 136 49.3
Zm00001eb381670 Zea mays HOM05D006442 ORTHO05D007980 1.4e-32 143.3 133 50.4
Pp3c1_3150 Physcomitrium patens HOM05D006442 ORTHO05D007980 2.3e-32 142.5 132 50.0
SMO244G0064 Selaginella moellendorffii HOM05D006442 ORTHO05D007980 4.0e-32 141.7 130 50.0
CsaV3_3G032370 Cucumis sativus L. HOM05D006442 ORTHO05D007980 1.6e-28 129.8 85 71.8
MBI01_g15755_MAGBIO Magnolia biondii HOM05D006442 ORTHO05D007980 2.0e-28 129.4 85 67.1
CAN.G37.7 Capsicum annuum HOM05D006442 ORTHO05D007980 1.3e-27 126.7 102 53.9
Nitab4.5_0004606g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 3.8e-27 125.2 83 67.5
CBR_g40140 Chara braunii HOM05D006442 ORTHO05D007980 8.8e-24 114.0 117 52.1
MD02G1317000 Malus domestica HOM05D006442 ORTHO05D007980 1.7e-22 109.8 67 74.6
ClCG10G012580 Citrullus lanatus HOM05D002156 ORTHO05D002328 1.4e-21 106.7 73 68.5
MD01G1062200 Malus domestica HOM05D006442 ORTHO05D007980 2.9e-19 99.0 72 65.3
CAN.G290.22 Capsicum annuum HOM05D006442 ORTHO05D007980 2.2e-14 82.8 56 58.9
Aa31LG8G5750 Aethionema arabicum HOM05D006442 ORTHO05D007980 3.7e-14 82.0 124 38.7
CsaV3_3G032380 Cucumis sativus L. HOM05D002156 ORTHO05D002328 1.1e-13 80.5 48 72.9
MELO3C023952.2 Cucumis melo HOM05D002156 ORTHO05D002328 5.4e-13 78.2 48 68.8
AL8G12830 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 1.0e-11 73.9 54 59.3
MD00G1052400 Malus domestica HOM05D006442 ORTHO05D007980 1.5e-10 70.1 46 65.2
Cre07.g315100 Chlamydomonas reinhardtii HOM05D006442 ORTHO05D007980 7.3e-10 67.8 70 47.1
AL5G40550 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 6.1e-09 64.7 48 58.3


User provided reference genes

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