Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G02226 Striga asiatica HOM05D004910 ORTHO05D006864 0.0e+00 3797.3 1998 100.0
SalBow4G1969 Salvia bowleyana HOM05D004910 ORTHO05D006864 0.0e+00 2541.9 2014 67.8
Migut.N01670 Erythranthe guttata HOM05D004910 ORTHO05D006864 0.0e+00 2292.7 2018 63.5
Dinv43524 Davidia involucrata HOM05D004910 ORTHO05D006864 0.0e+00 2039.6 2011 57.8
TAR629G2465 Trochodendron aralioides HOM05D004910 ORTHO05D006864 0.0e+00 2023.8 2049 56.0
Nitab4.5_0006461g0010 Nicotiana tabacum HOM05D004910 ORTHO05D006864 0.0e+00 2017.7 2016 56.6
Thecc.05G234000 Theobroma cacao HOM05D004910 ORTHO05D006864 0.0e+00 2005.7 2025 55.7
Potri.013G071800 Populus trichocarpa HOM05D004910 ORTHO05D006864 0.0e+00 2005.3 2030 55.6
Cc08_g05600 Coffea canephora HOM05D004910 ORTHO05D006864 0.0e+00 2003.8 2025 55.4
Cfa003693 Carpinus fangiana HOM05D004910 ORTHO05D006864 0.0e+00 2003.0 2028 55.7
CAN.G992.20 Capsicum annuum HOM05D004910 ORTHO05D006864 0.0e+00 1995.7 2013 56.0
Nitab4.5_0000792g0070 Nicotiana tabacum HOM05D004910 ORTHO05D006864 0.0e+00 1991.5 2025 56.1
Oeu002050.1 Olea europaea HOM05D004910 ORTHO05D006864 0.0e+00 1986.8 1667 66.6
Sopen01g032990 Solanum pennellii HOM05D004910 ORTHO05D006864 0.0e+00 1936.4 2015 55.8
Duzib177G0285 Durio zibethinus HOM05D004910 ORTHO05D006864 0.0e+00 1925.2 2028 54.4
DCAR_029567 Daucus carota HOM05D004910 ORTHO05D006864 0.0e+00 1909.8 2033 54.0
Gorai.007G249800 Gossypium raimondii HOM05D004910 ORTHO05D006864 0.0e+00 1906.0 2031 54.2
CiPaw.02G046700 Carya illinoinensis HOM05D004910 ORTHO05D006864 0.0e+00 1892.5 2023 53.4
Manes.08G157000 Manihot esculenta HOM05D004910 ORTHO05D006864 0.0e+00 1887.1 2029 54.5
Solyc01g081430.4 Solanum lycopersicum HOM05D004910 ORTHO05D006864 0.0e+00 1884.4 1960 55.7
RcHm_v2.0_Chr1g0342311 Rosa chinensis HOM05D004910 ORTHO05D006864 0.0e+00 1882.1 2018 54.6
CSS0017393 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 0.0e+00 1880.1 1912 55.8
Peaxi162Scf00907g00121 Petunia axillaris HOM05D004910 ORTHO05D006864 0.0e+00 1874.8 1996 54.8
Prupe.2G105000 Prunus persica HOM05D004910 ORTHO05D006864 0.0e+00 1872.1 2028 54.9
Haze_15792 Corylus avellana HOM05D004910 ORTHO05D006864 0.0e+00 1865.9 1967 53.8
MD07G1080500 Malus domestica HOM05D004910 ORTHO05D006864 0.0e+00 1865.1 2030 54.5
GSVIVG01019298001 Vitis vinifera HOM05D004910 ORTHO05D006864 0.0e+00 1865.1 2048 51.9
FAN10G3403 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 1861.7 2022 53.6
CANSAT25G1237 Cannabis sativa HOM05D004910 ORTHO05D006864 0.0e+00 1850.9 2022 53.1
Rhsim07G0047300 Rhododendron simsii HOM05D004910 ORTHO05D006864 0.0e+00 1847.4 1857 54.0
FvH4_7g07740 Fragaria vesca HOM05D004910 ORTHO05D006864 0.0e+00 1838.2 2022 53.6
FAN03G0816 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 1833.5 2044 53.2
FAN06G0636 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 1826.6 2042 53.1
TWI34G0933 Tripterygium wilfordii HOM05D004910 ORTHO05D006864 0.0e+00 1808.9 2042 50.8
Glyma.03G099800 Glycine max HOM05D004910 ORTHO05D006864 0.0e+00 1803.9 2022 51.2
FAN01G0980 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 1796.6 2119 51.3
CsaV3_3G009930 Cucumis sativus L. HOM05D004910 ORTHO05D006864 0.0e+00 1788.1 2022 52.5
Lj3g0022995 Lotus japonicus HOM05D004910 ORTHO05D006864 0.0e+00 1780.0 2026 51.6
Lalb_Chr07g0194851 Lupinus albus HOM05D004910 ORTHO05D006864 0.0e+00 1778.5 2029 52.7
Phvul.010G039700 Phaseolus vulgaris HOM05D004910 ORTHO05D006864 0.0e+00 1778.5 2030 51.0
Glyma.07G122900 Glycine max HOM05D004910 ORTHO05D006864 0.0e+00 1771.9 2021 50.9
Lj9A617T56 Lonicera japonica HOM05D004910 ORTHO05D006864 0.0e+00 1771.9 1830 53.2
Gohir.A11G225700 Gossypium hirsutum HOM05D004910 ORTHO05D006864 0.0e+00 1770.7 1898 54.5
MELO3C006215.2 Cucumis melo HOM05D004910 ORTHO05D006864 0.0e+00 1770.4 2022 51.5
Gohir.D11G236600 Gossypium hirsutum HOM05D004910 ORTHO05D006864 0.0e+00 1767.7 1893 53.9
Ca_25886_v3 Cicer arietinum L. HOM05D004910 ORTHO05D006864 0.0e+00 1764.2 2029 51.8
Medtr8g009780 Medicago truncatula HOM05D004910 ORTHO05D006864 0.0e+00 1754.6 2026 50.8
Ciclev10030475m.g Citrus clementina HOM05D004910 ORTHO05D006864 0.0e+00 1751.1 2030 50.3
Eucgr.D01069 Eucalyptus grandis HOM05D004910 ORTHO05D006864 0.0e+00 1746.5 2025 50.8
ECA234G3354 Erigeron canadensis HOM05D004910 ORTHO05D006864 0.0e+00 1741.1 2019 51.6
TPR.G17367 Trifolium pratense HOM05D004910 ORTHO05D006864 0.0e+00 1739.9 2025 50.2
MBI04_g30775_MAGBIO Magnolia biondii HOM05D004910 ORTHO05D006864 0.0e+00 1739.5 2049 50.5
Sed0008127 Sechium edule HOM05D004910 ORTHO05D006864 0.0e+00 1728.0 2023 50.7
Lsat_1_v5_gn_4_42261 Lactuca sativa HOM05D004910 ORTHO05D006864 0.0e+00 1726.1 2015 50.4
PSO782G5450 Papaver somniferum HOM05D004910 ORTHO05D006864 0.0e+00 1719.9 2033 50.3
Aqoxy3G02002 Aquilegia oxysepala HOM05D004910 ORTHO05D006864 0.0e+00 1717.2 2050 49.3
VMungo0331G1962 Vigna mungo HOM05D004910 ORTHO05D006864 0.0e+00 1711.4 2028 49.7
ClCG05G002500 Citrullus lanatus HOM05D004910 ORTHO05D006864 0.0e+00 1704.5 2018 50.0
vmacro13594 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 0.0e+00 1647.1 1966 48.0
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 0.0e+00 1645.6 2021 49.3
arahy.Tifrunner.gnm1.ann1.7UUD9R Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 1632.5 1927 49.6
THA.LOC104805731 Tarenaya hassleriana HOM05D004910 ORTHO05D006864 0.0e+00 1624.0 2020 48.3
HanXRQChr15g0492621 Helianthus annuus HOM05D004910 ORTHO05D006864 0.0e+00 1622.1 2002 48.7
QL04p053216 Quercus lobata HOM05D004910 ORTHO05D006864 0.0e+00 1618.6 1692 54.4
EL10Ac1g00665 Beta vulgaris HOM05D004910 ORTHO05D006864 0.0e+00 1579.3 2112 46.3
Hund26917 Selenicereus undatus HOM05D004910 ORTHO05D006864 0.0e+00 1548.5 2029 47.2
Ah.05g177140 Amaranthus hybridus HOM05D004910 ORTHO05D006864 0.0e+00 1458.4 2022 44.4
AL7G44770 Arabidopsis lyrata HOM05D004910 ORTHO05D006864 0.0e+00 1448.3 2019 45.4
ATR0829G021 Amborella trichopoda HOM05D004910 ORTHO05D006864 0.0e+00 1437.9 2037 45.8
Aa31LG9G17970 Aethionema arabicum HOM05D004910 ORTHO05D006864 0.0e+00 1406.7 2103 42.9
AUR62038026 Chenopodium quinoa HOM05D004910 ORTHO05D006864 0.0e+00 1339.3 1762 46.9
Sc26g0002020 Simmondsia chinensis HOM05D004910 ORTHO05D006864 0.0e+00 1298.1 1690 47.3
CARHR216720 Cardamine hirsuta HOM05D004910 ORTHO05D006864 0.0e+00 1272.7 1714 46.8
Zm00001eb025470 Zea mays HOM05D004910 ORTHO05D006864 0.0e+00 1265.8 1822 41.5
CDE12G0362 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 0.0e+00 1251.5 1638 43.8
PGR083G1400 Punica granatum HOM05D004910 ORTHO05D006864 0.0e+00 1218.4 1388 49.2
AUR62014509 Chenopodium quinoa HOM05D004910 ORTHO05D006864 0.0e+00 1208.4 1715 45.1
arahy.Tifrunner.gnm1.ann1.X9S6DI Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 1153.3 1582 46.7
Mapoly0032s0018 Marchantia polymorpha HOM05D004910 ORTHO05D006864 1.8e-298 1030.4 2147 36.7
Atru.chr2.1651 Acer truncatum HOM05D004910 ORTHO05D006864 9.4e-287 991.5 971 54.7
Atru.chr2.1650 Acer truncatum HOM05D004910 ORTHO05D006864 1.7e-272 944.1 1027 53.9
Pp3c7_26820 Physcomitrium patens HOM05D004910 ORTHO05D006864 4.2e-271 939.5 2101 33.9
Psat4g216280 Pisum sativum HOM05D004910 ORTHO05D006864 1.7e-267 927.5 1337 42.3
arahy.Tifrunner.gnm1.ann1.L1X5S4 Arachis hypogaea HOM05D004910 ORTHO05D006864 1.3e-264 917.9 1147 47.8
AagrBONN_evm.TU.Sc2ySwM_362.1947 Anthoceros agrestis HOM05D004910 ORTHO05D006864 1.9e-258 897.5 1783 34.8
Cpa.g.sc73.58 Carica papaya HOM05D004910 ORTHO05D006864 2.3e-256 890.6 1037 47.9
PSO063G6831 Papaver somniferum HOM05D004910 ORTHO05D006864 1.4e-253 881.3 1123 48.2
SEGI_03249 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 2.7e-241 840.5 1379 37.9
PSO063G2935 Papaver somniferum HOM05D004910 ORTHO05D006864 1.5e-207 728.4 783 51.3
Actinidia21201 Actinidia chinensis HOM05D004910 ORTHO05D006864 8.2e-198 696.0 875 45.4
SMO347G0286 Selaginella moellendorffii HOM05D004910 ORTHO05D006864 6.7e-184 649.8 1458 31.4
Os04g0218600 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 5.2e-176 623.6 853 43.3
Hma1.2p1_0353F.1_g133240 Hydrangea macrophylla HOM05D004910 ORTHO05D006864 6.3e-158 563.5 412 68.4
CBR_g49462 Chara braunii HOM05D004910 ORTHO05D006864 5.4e-157 560.5 2231 26.6
unitig_578.g16705 Utricularia gibba HOM05D004910 ORTHO05D006864 1.8e-144 518.8 461 59.2
QL04p053202 Quercus lobata HOM05D004910 ORTHO05D006864 2.4e-120 438.7 347 64.8
CSS0010640 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 1.9e-106 392.5 342 62.0
Psat4g215960 Pisum sativum HOM05D004910 ORTHO05D006864 1.8e-104 386.0 344 58.7
PGR083G0666 Punica granatum HOM05D004910 ORTHO05D006864 1.8e-104 386.0 563 48.0
Actinidia21200 Actinidia chinensis HOM05D004910 ORTHO05D006864 1.6e-92 346.3 348 56.0
Actinidia31737 Actinidia chinensis HOM05D004910 ORTHO05D006864 1.7e-73 283.1 334 50.6
CDE12G0963 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 3.1e-64 252.3 379 52.0
Cpa.g.sc73.57 Carica papaya HOM05D004910 ORTHO05D006864 9.4e-61 240.7 347 49.6
Psat4g216320 Pisum sativum HOM05D004910 ORTHO05D006864 1.1e-56 227.3 310 60.0
Cpa.g.sc73.59 Carica papaya HOM05D004910 ORTHO05D006864 1.8e-56 226.5 262 49.6
AUR62014510 Chenopodium quinoa HOM05D004910 ORTHO05D006864 1.8e-51 209.9 226 50.9
AagrBONN_evm.TU.Sc2ySwM_117.2552 Anthoceros agrestis HOM05D004910 ORTHO05D006864 2.3e-51 209.5 216 50.5
AUR62038025 Chenopodium quinoa HOM05D004910 ORTHO05D006864 9.8e-50 204.1 243 48.6
arahy.Tifrunner.gnm1.ann1.2JI1W5 Arachis hypogaea HOM05D004910 ORTHO05D006864 5.9e-47 194.9 218 48.6
vmacro13596 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 5.0e-38 165.2 161 62.1
CSS0011325 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 1.5e-37 163.7 134 59.7
Rhsim07G0047400 Rhododendron simsii HOM05D004910 ORTHO05D006864 1.2e-36 160.6 161 62.7
Lj9A617T57 Lonicera japonica HOM05D004910 ORTHO05D006864 1.7e-33 150.2 144 64.6
PGSC0003DMG400031109 Solanum tuberosum HOM05D004910 ORTHO05D006864 1.6e-31 143.7 233 46.8
Os10g0581000 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 3.5e-31 142.5 338 45.3
Prupe.2G100700 Prunus persica HOM05D004910 ORTHO05D006864 5.4e-24 118.6 198 39.9
CSS0036242 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 3.5e-23 115.9 96 64.6
CSS0010022 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 4.6e-23 115.5 96 64.6
Os04g0218701 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 2.5e-21 109.8 372 43.0
FvH4_1g21580 Fragaria vesca HOM05D004910 ORTHO05D045425 4.7e-20 105.5 137 46.0
RcHm_v2.0_Chr4g0408121 Rosa chinensis HOM05D004910 ORTHO05D006864 1.4e-19 104.0 85 61.2
Psat6g100000 Pisum sativum HOM05D004910 ORTHO05D030483 4.0e-19 102.4 225 34.2
SEGI_03420 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 2.6e-18 99.8 178 45.5
Gohir.A11G225602 Gossypium hirsutum HOM05D004910 ORTHO05D006864 1.4e-16 94.0 91 53.8
RcHm_v2.0_Chr4g0407941 Rosa chinensis HOM05D004910 ORTHO05D019205 1.1e-13 84.3 65 58.5
Solyc01g081420.3 Solanum lycopersicum HOM05D004910 ORTHO05D006864 4.7e-12 79.0 55 70.9
Psat0s999g0120 Pisum sativum HOM05D004910 ORTHO05D030483 4.0e-11 75.9 144 35.4
SEGI_03241 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 4.0e-11 75.9 55 67.3
Cpa.g.sc73.62 Carica papaya HOM05D004910 ORTHO05D006864 6.8e-11 75.1 64 56.2
Peaxi162Scf00907g00123 Petunia axillaris HOM05D004910 ORTHO05D006864 2.0e-10 73.6 54 68.5
vmacro13595 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 4.1e-08 65.9 48 75.0
Gohir.D06G038650 Gossypium hirsutum HOM05D004910 ORTHO05D030909 9.2e-08 64.7 55 60.0
FAN23G3082 Fragaria x ananassa HOM05D004910 ORTHO05D045425 1.6e-07 63.9 65 53.8
Lsat_1_v5_gn_5_2020 Lactuca sativa HOM05D004873 ORTHO05D026408 1.6e-07 63.9 51 54.9
Lsat_1_v5_gn_6_33360 Lactuca sativa HOM05D004873 ORTHO05D026408 1.6e-07 63.9 51 54.9
Actinidia21202 Actinidia chinensis HOM05D004910 ORTHO05D030909 7.8e-07 61.6 49 69.4
Haze_15793 Corylus avellana HOM05D004910 ORTHO05D006864 1.3e-06 60.8 39 71.8
FAN03G1104 Fragaria x ananassa HOM05D004910 ORTHO05D019205 6.6e-06 58.5 48 56.2


User provided reference genes

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