Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 1.9e-160 569.3 328 100.0
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 5.4e-115 418.3 329 68.7
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 4.2e-99 365.5 329 62.0
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 9.3e-99 364.4 329 64.4
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 9.3e-99 364.4 329 64.4
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 1.6e-95 353.6 335 59.4
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 1.2e-90 337.4 332 58.1
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.6e-90 337.0 334 57.5
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 2.3e-89 333.2 329 58.4
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 5.1e-89 332.0 329 57.1
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 4.3e-88 328.9 344 58.4
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 2.8e-87 326.2 332 57.8
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 1.1e-86 324.3 331 55.0
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 1.1e-86 324.3 329 56.2
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 1.8e-86 323.6 330 54.2
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 6.9e-86 321.6 329 57.4
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 2.0e-85 320.1 326 56.4
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 4.5e-85 318.9 332 55.7
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.1e-83 314.3 328 53.0
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 1.4e-83 313.9 330 53.3
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 4.2e-83 312.4 330 59.4
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 1.2e-82 310.8 332 54.5
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 3.9e-81 305.8 267 62.5
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.1e-80 304.3 331 53.2
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 1.9e-80 303.5 326 53.4
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 9.6e-80 301.2 331 53.2
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 4.8e-79 298.9 331 52.0
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 1.1e-78 297.7 330 51.8
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 2.4e-78 296.6 330 54.5
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 5.3e-78 295.4 332 53.6
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 6.9e-78 295.0 330 51.2
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 1.2e-77 294.3 332 51.5
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 1.5e-77 293.9 330 53.6
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 3.4e-77 292.7 332 52.7
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 5.8e-77 292.0 386 47.4
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 1.7e-76 290.4 275 61.1
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 2.9e-76 289.7 331 56.2
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 2.9e-76 289.7 332 53.0
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 4.9e-76 288.9 331 57.7
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 5.5e-75 285.4 324 50.6
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 2.7e-74 283.1 332 55.7
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 3.5e-74 282.7 324 50.3
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 4.6e-74 282.3 324 50.3
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 7.9e-74 281.6 332 53.3
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 1.8e-73 280.4 332 54.5
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 2.3e-73 280.0 332 51.5
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 5.1e-73 278.9 326 51.5
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 3.3e-72 276.2 392 46.7
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 9.6e-72 274.6 333 50.2
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 2.8e-71 273.1 332 50.3
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 3.7e-71 272.7 332 51.2
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 4.8e-71 272.3 392 43.4
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 6.3e-71 271.9 331 48.0
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 1.1e-70 271.2 331 48.3
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 1.1e-70 271.2 339 54.0
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 1.8e-70 270.4 332 54.2
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 9.0e-70 268.1 337 53.7
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 1.2e-69 267.7 332 51.8
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.2e-69 267.7 332 56.3
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.5e-69 267.3 332 56.3
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 2.0e-69 266.9 332 51.5
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 4.5e-69 265.8 339 49.6
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 7.6e-69 265.0 333 50.2
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 2.2e-68 263.5 334 51.2
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 3.8e-68 262.7 337 50.4
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 1.4e-67 260.8 334 47.0
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 1.9e-67 260.4 337 52.8
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 3.2e-67 259.6 330 47.6
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 1.5e-64 250.8 332 50.3
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 2.5e-64 250.0 333 47.1
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 9.7e-64 248.1 332 47.6
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 1.4e-62 244.2 332 44.9
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 2.4e-62 243.4 328 50.0
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 3.1e-62 243.0 325 46.8
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 4.1e-62 242.7 318 47.2
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 4.1e-62 242.7 389 46.3
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 1.2e-61 241.1 319 48.9
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 1.2e-61 241.1 330 47.0
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 3.4e-61 239.6 331 53.2
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 4.5e-61 239.2 404 42.1
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 7.7e-61 238.4 331 49.2
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 1.0e-60 238.0 332 53.3
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 1.1e-59 234.6 332 46.1
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 5.5e-59 232.3 332 45.5
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 9.4e-59 231.5 303 48.2
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 1.8e-57 227.3 327 48.9
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 1.8e-57 227.3 324 44.4
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 5.1e-57 225.7 332 44.9
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.5e-56 224.2 304 47.0
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 2.6e-56 223.4 286 49.7
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 3.3e-56 223.0 323 44.6
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 4.8e-55 219.2 327 48.3
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 1.8e-54 217.2 324 48.5
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 6.9e-54 215.3 328 48.5
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 3.4e-53 213.0 333 42.0
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 1.3e-52 211.1 389 42.4
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 1.3e-52 211.1 336 43.8
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 5.0e-52 209.1 179 60.9
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 4.2e-51 206.1 265 45.3
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 7.2e-51 205.3 329 46.8
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 7.2e-51 205.3 263 55.1
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 1.2e-50 204.5 320 41.2
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 2.1e-50 203.8 284 42.6
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 3.0e-49 199.9 262 54.6
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 3.9e-49 199.5 333 43.2
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 5.2e-49 199.1 307 41.4
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 1.1e-48 198.0 341 39.6
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 3.3e-48 196.4 320 41.9
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 7.4e-48 195.3 301 44.5
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 7.4e-48 195.3 373 39.4
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 9.7e-48 194.9 366 41.8
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 1.7e-47 194.1 332 45.8
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 1.7e-47 194.1 332 39.2
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 2.2e-47 193.7 352 38.4
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 3.7e-47 193.0 310 47.4
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 6.3e-47 192.2 335 39.7
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 8.2e-47 191.8 307 40.1
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 1.4e-46 191.0 293 40.6
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 1.8e-46 190.7 335 45.1
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 2.4e-46 190.3 339 39.2
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 7.0e-46 188.7 330 44.5
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 9.1e-46 188.3 361 42.9
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 1.0e-44 184.9 303 42.2
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 6.5e-44 182.2 304 47.0
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 2.3e-41 173.7 291 37.5
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 8.8e-41 171.8 180 52.2
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 2.6e-40 170.2 326 38.3
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 2.6e-40 170.2 326 38.3
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 5.7e-40 169.1 278 39.6
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 4.8e-39 166.0 296 39.5
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 1.4e-38 164.5 297 39.4
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 4.5e-37 159.5 297 39.1
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 5.9e-37 159.1 329 37.4
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 4.2e-35 152.9 266 50.4
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 8.0e-34 148.7 154 55.2
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 5.2e-33 146.0 196 43.4
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 1.2e-32 144.8 294 37.8
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 4.8e-31 139.4 316 36.4
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 9.1e-30 135.2 210 40.0
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.6e-29 134.4 201 43.8
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 9.5e-27 125.2 309 35.9
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 8.8e-25 118.6 134 49.3
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 1.2e-24 118.2 146 51.4
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 1.7e-23 114.4 274 35.8
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 1.7e-23 114.4 135 48.1
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 8.3e-23 112.1 370 27.3
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 8.3e-23 112.1 152 52.6
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 8.3e-23 112.1 152 52.6
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 1.4e-22 111.3 105 58.1
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 1.4e-22 111.3 328 32.0
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 3.1e-22 110.2 233 37.8
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 3.1e-22 110.2 152 45.4
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 1.6e-21 107.8 154 45.5
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 1.7e-20 104.4 170 38.2
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 5.0e-20 102.8 370 28.9
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 1.5e-19 101.3 292 35.6
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 3.6e-18 96.7 156 44.2
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 2.0e-16 90.9 253 30.8
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 8.3e-15 85.5 208 31.2
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 1.4e-14 84.7 225 31.1
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 4.1e-14 83.2 123 43.9
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 2.0e-13 80.9 192 35.9
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 8.6e-12 75.5 141 37.6
RcHm_v2.0_Chr5g0040961 Rosa chinensis HOM05D003707 ORTHO05D004309 1.9e-11 74.3 79 50.6
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 5.6e-11 72.8 194 37.1
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 9.5e-11 72.0 327 26.3
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 1.6e-10 71.2 214 30.4
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 1.6e-10 71.2 214 30.4
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 2.8e-10 70.5 84 51.2
BcaC04g20946 Brassica carinata HOM05D003707 ORTHO05D004309 2.3e-09 67.4 211 27.5
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 4.0e-09 66.6 196 30.6
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 4.0e-09 66.6 196 30.6
Lsat_1_v5_gn_1_3000 Lactuca sativa HOM05D003707 ORTHO05D004309 6.8e-09 65.9 101 45.5
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 8.9e-09 65.5 83 45.8
BcaB02g06537 Brassica carinata HOM05D003707 ORTHO05D004309 1.9e-06 57.8 44 63.6


User provided reference genes

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