Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G02174 Striga asiatica HOM05D004106 ORTHO05D004381 2.7e-98 362.1 193 100.0
MSTRG.1632 Avicennia marina HOM05D004106 ORTHO05D004381 2.6e-64 249.2 194 74.7
Migut.E01458 Erythranthe guttata HOM05D004106 ORTHO05D004381 9.7e-64 247.3 171 78.4
Oeu006863.1 Olea europaea HOM05D004106 ORTHO05D004381 2.8e-63 245.7 205 70.7
unitig_749.g13818 Utricularia gibba HOM05D004106 ORTHO05D004381 4.1e-62 241.9 193 73.1
Dinv08223 Davidia involucrata HOM05D004106 ORTHO05D004381 1.0e-60 237.3 204 71.1
Dinv08178 Davidia involucrata HOM05D004106 ORTHO05D004381 2.2e-60 236.1 204 71.6
Oeu048547.1 Olea europaea HOM05D004106 ORTHO05D004381 5.0e-60 235.0 205 69.3
Peaxi162Scf00045g02039 Petunia axillaris HOM05D004106 ORTHO05D004381 1.5e-59 233.4 192 69.8
Ciclev10009489m.g Citrus clementina HOM05D004106 ORTHO05D004381 2.5e-59 232.6 179 75.4
EL10Ac2g02497 Beta vulgaris HOM05D004106 ORTHO05D004381 4.2e-59 231.9 178 75.3
TAR626G0743 Trochodendron aralioides HOM05D004106 ORTHO05D004381 4.2e-59 231.9 179 75.4
Gohir.A07G027300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 5.5e-59 231.5 176 75.0
Gorai.001G032700 Gossypium raimondii HOM05D004106 ORTHO05D004381 5.5e-59 231.5 176 75.0
Actinidia14131 Actinidia chinensis HOM05D004106 ORTHO05D004381 9.4e-59 230.7 178 74.7
Solyc08g006780.3 Solanum lycopersicum HOM05D004106 ORTHO05D004381 9.4e-59 230.7 204 68.1
Nitab4.5_0002011g0110 Nicotiana tabacum HOM05D004106 ORTHO05D004381 1.6e-58 229.9 205 69.3
Sopen08g002730 Solanum pennellii HOM05D004106 ORTHO05D004381 1.6e-58 229.9 204 68.1
Atru.chr7.22 Acer truncatum HOM05D004106 ORTHO05D004381 2.7e-58 229.2 179 74.3
TAR383G0918 Trochodendron aralioides HOM05D004106 ORTHO05D004381 8.0e-58 227.6 179 74.3
Cc06_g14830 Coffea canephora HOM05D004106 ORTHO05D004381 1.4e-57 226.9 195 68.7
PSO339G2511 Papaver somniferum HOM05D004106 ORTHO05D004381 1.4e-57 226.9 178 72.5
PSO384G4038 Papaver somniferum HOM05D004106 ORTHO05D004381 1.4e-57 226.9 178 72.5
QL02p093501 Quercus lobata HOM05D004106 ORTHO05D004381 1.4e-57 226.9 182 72.0
Phvul.005G005700 Phaseolus vulgaris HOM05D004106 ORTHO05D004381 2.3e-57 226.1 181 72.4
PGSC0003DMG400026299 Solanum tuberosum HOM05D004106 ORTHO05D004381 2.3e-57 226.1 204 66.7
Nitab4.5_0003563g0010 Nicotiana tabacum HOM05D004106 ORTHO05D004381 3.0e-57 225.7 205 68.8
ATR0580G427 Amborella trichopoda HOM05D004106 ORTHO05D004381 3.9e-57 225.3 144 83.3
Cpa.g.sc46.167 Carica papaya HOM05D004106 ORTHO05D004381 3.9e-57 225.3 190 72.1
Glyma.06G225800 Glycine max HOM05D004106 ORTHO05D004381 6.7e-57 224.6 181 71.8
CAN.G353.7 Capsicum annuum HOM05D004106 ORTHO05D004381 1.1e-56 223.8 204 68.1
Potri.018G105600 Populus trichocarpa HOM05D004106 ORTHO05D004381 1.1e-56 223.8 177 69.5
Duzib168G0532 Durio zibethinus HOM05D004106 ORTHO05D004381 2.0e-56 223.0 176 74.4
CSS0032495 Camellia sinensis var. sinensis HOM05D004106 ORTHO05D004381 2.6e-56 222.6 148 81.1
Hund02987 Selenicereus undatus HOM05D004106 ORTHO05D004381 2.6e-56 222.6 177 72.3
VMungo1080G0447 Vigna mungo HOM05D004106 ORTHO05D004381 2.6e-56 222.6 181 71.3
arahy.Tifrunner.gnm1.ann1.J1V5JT Arachis hypogaea HOM05D004106 ORTHO05D004381 3.3e-56 222.2 172 72.7
arahy.Tifrunner.gnm1.ann1.U84FQB Arachis hypogaea HOM05D004106 ORTHO05D004381 5.7e-56 221.5 171 70.2
MBI14_g09102_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 7.4e-56 221.1 162 77.8
Glyma.12G156200 Glycine max HOM05D004106 ORTHO05D004381 1.7e-55 219.9 182 71.4
Duzib150G0841 Durio zibethinus HOM05D004106 ORTHO05D004381 2.2e-55 219.5 144 81.9
Manes.14G144700 Manihot esculenta HOM05D004106 ORTHO05D004381 2.8e-55 219.2 178 72.5
TWI63G0696 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 3.7e-55 218.8 180 72.2
Prupe.1G394300 Prunus persica HOM05D004106 ORTHO05D004381 8.2e-55 217.6 145 80.0
CANSAT11G1220 Cannabis sativa HOM05D004106 ORTHO05D004381 1.1e-54 217.2 173 71.7
Manes.03G008200 Manihot esculenta HOM05D004106 ORTHO05D004381 1.1e-54 217.2 177 72.3
THA.LOC104819993 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 1.1e-54 217.2 179 70.9
BolC3t21168H Brassica oleracea HOM05D004106 ORTHO05D004381 1.4e-54 216.9 147 80.3
A08p19160 Brassica napus HOM05D004106 ORTHO05D004381 1.8e-54 216.5 149 77.9
Hund25620 Selenicereus undatus HOM05D004106 ORTHO05D004381 1.8e-54 216.5 160 75.6
COL.COLO4_18821 Corchorus olitorius HOM05D004106 ORTHO05D004381 2.4e-54 216.1 176 72.2
A09p56640 Brassica napus HOM05D004106 ORTHO05D004381 5.3e-54 214.9 147 78.2
C08p39590 Brassica napus HOM05D004106 ORTHO05D004381 5.3e-54 214.9 147 78.2
BolC8t51532H Brassica oleracea HOM05D004106 ORTHO05D004381 5.3e-54 214.9 147 78.2
BraA09t41055Z Brassica rapa HOM05D004106 ORTHO05D004381 5.3e-54 214.9 147 78.2
Ca_21133_v3 Cicer arietinum L. HOM05D004106 ORTHO05D004381 5.3e-54 214.9 172 72.1
FAN15G2986 Fragaria x ananassa HOM05D004106 ORTHO05D004381 5.3e-54 214.9 148 79.1
FAN27G3303 Fragaria x ananassa HOM05D004106 ORTHO05D004381 7.0e-54 214.5 148 79.1
THA.LOC104803919 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 7.0e-54 214.5 194 68.0
BraA08t33877Z Brassica rapa HOM05D004106 ORTHO05D004381 9.1e-54 214.2 178 70.2
Lalb_Chr07g0179881 Lupinus albus HOM05D004106 ORTHO05D004381 9.1e-54 214.2 177 68.9
CAN.G551.46 Capsicum annuum HOM05D004106 ORTHO05D004381 1.2e-53 213.8 185 66.5
HPP92_004701 Vanilla planifolia HOM05D004106 ORTHO05D004381 1.2e-53 213.8 186 68.3
Medtr0380s0040 Medicago truncatula HOM05D004106 ORTHO05D004381 1.6e-53 213.4 184 67.4
AL4G14070 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 2.0e-53 213.0 167 72.5
BcaC07g40965 Brassica carinata HOM05D004106 ORTHO05D004381 2.0e-53 213.0 146 77.4
CiPaw.15G167000 Carya illinoinensis HOM05D004106 ORTHO05D004381 2.0e-53 213.0 176 72.7
RcHm_v2.0_Chr6g0299371 Rosa chinensis HOM05D004106 ORTHO05D004381 2.0e-53 213.0 141 80.9
GSVIVG01023623001 Vitis vinifera HOM05D004106 ORTHO05D004381 2.0e-53 213.0 179 69.3
Eucgr.C02535 Eucalyptus grandis HOM05D004106 ORTHO05D004381 2.6e-53 212.6 178 67.4
Thhalv10026346m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 2.6e-53 212.6 147 78.9
Gohir.A05G053000 Gossypium hirsutum HOM05D004106 ORTHO05D004381 2.6e-53 212.6 173 70.5
Lj6g0027633 Lotus japonicus HOM05D004106 ORTHO05D004381 2.6e-53 212.6 180 65.6
BcaB03g12652 Brassica carinata HOM05D004106 ORTHO05D004381 3.5e-53 212.2 146 78.8
Eucgr.C02498 Eucalyptus grandis HOM05D004106 ORTHO05D004381 3.5e-53 212.2 178 66.9
FvH4_2g41160 Fragaria vesca HOM05D004106 ORTHO05D004381 3.5e-53 212.2 148 77.7
Gohir.D05G054601 Gossypium hirsutum HOM05D004106 ORTHO05D004381 3.5e-53 212.2 173 70.5
Gorai.009G056300 Gossypium raimondii HOM05D004106 ORTHO05D004381 3.5e-53 212.2 173 70.5
MBI15_g18237_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 3.5e-53 212.2 147 81.6
TWI34G1622 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 3.5e-53 212.2 178 69.7
PGR102G1248 Punica granatum HOM05D004106 ORTHO05D004381 4.5e-53 211.8 193 66.8
Carub.0004s0318 Capsella rubella HOM05D004106 ORTHO05D004381 5.9e-53 211.5 149 75.8
CARHR184720 Cardamine hirsuta HOM05D004106 ORTHO05D004381 5.9e-53 211.5 149 76.5
HanXRQChr03g0065371 Helianthus annuus HOM05D004106 ORTHO05D004381 5.9e-53 211.5 177 68.4
Sp7g28490 Schrenkiella parvula HOM05D004106 ORTHO05D004381 5.9e-53 211.5 179 70.4
Psat1g022480 Pisum sativum HOM05D004106 ORTHO05D004381 7.7e-53 211.1 153 73.9
Solyc12g009980.2 Solanum lycopersicum HOM05D004106 ORTHO05D004381 7.7e-53 211.1 177 68.9
PGSC0003DMG400007906 Solanum tuberosum HOM05D004106 ORTHO05D004381 1.0e-52 210.7 177 68.4
Aa31LG2G19880 Aethionema arabicum HOM05D004106 ORTHO05D004381 1.3e-52 210.3 197 65.5
Lj4g0010746 Lotus japonicus HOM05D004106 ORTHO05D004381 1.3e-52 210.3 178 70.8
Peaxi162Scf00062g00225 Petunia axillaris HOM05D004106 ORTHO05D004381 1.3e-52 210.3 173 70.5
SalBow1G1642 Salvia bowleyana HOM05D004106 ORTHO05D004381 1.3e-52 210.3 171 67.8
Sp4g02930 Schrenkiella parvula HOM05D004106 ORTHO05D004381 1.3e-52 210.3 160 71.9
Migut.K00317 Erythranthe guttata HOM05D004106 ORTHO05D004381 1.7e-52 209.9 189 63.5
Lalb_Chr13g0300831 Lupinus albus HOM05D004106 ORTHO05D004381 1.7e-52 209.9 171 70.2
Sopen12g004850 Solanum pennellii HOM05D004106 ORTHO05D004381 1.7e-52 209.9 165 71.5
AT2G24020 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 2.2e-52 209.5 150 76.0
vmacro06074 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 2.2e-52 209.5 146 76.7
Prupe.7G264300 Prunus persica HOM05D004106 ORTHO05D004381 5.0e-52 208.4 142 79.6
ClCG06G012460 Citrullus lanatus HOM05D004106 ORTHO05D004381 8.5e-52 207.6 171 69.6
CsaV3_1G029020 Cucumis sativus L. HOM05D004106 ORTHO05D004381 1.5e-51 206.8 171 70.2
AT4G30620 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 1.9e-51 206.5 178 68.5
MD08G1056000 Malus domestica HOM05D004106 ORTHO05D004381 1.9e-51 206.5 146 77.4
AL7G21520 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 2.5e-51 206.1 178 69.1
Os02g0180200 Oryza sativa ssp. japonica HOM05D004106 ORTHO05D004381 2.5e-51 206.1 149 75.2
HanXRQChr09g0244601 Helianthus annuus HOM05D004106 ORTHO05D004381 3.2e-51 205.7 175 66.9
Medtr4g130730 Medicago truncatula HOM05D004106 ORTHO05D004381 9.4e-51 204.1 177 66.7
Lsat_1_v5_gn_7_50001 Lactuca sativa HOM05D004106 ORTHO05D004381 1.2e-50 203.8 177 66.1
Sed0000106 Sechium edule HOM05D004106 ORTHO05D004381 1.2e-50 203.8 166 68.7
CDE05G2988 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 1.6e-50 203.4 159 69.2
TPR.G24849 Trifolium pratense HOM05D004106 ORTHO05D004381 2.1e-50 203.0 171 66.1
Carub.0007s0995 Capsella rubella HOM05D004106 ORTHO05D004381 3.6e-50 202.2 178 68.5
CDE02G1701 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 3.6e-50 202.2 146 73.3
C03p88620 Brassica napus HOM05D004106 ORTHO05D004381 4.7e-50 201.8 156 73.7
Thhalv10000343m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 4.7e-50 201.8 140 76.4
TPR.G3593 Trifolium pratense HOM05D004106 ORTHO05D004381 4.7e-50 201.8 176 64.2
TWI32G0932 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 4.7e-50 201.8 167 73.1
ECA240G3283 Erigeron canadensis HOM05D004106 ORTHO05D004381 6.1e-50 201.4 177 66.1
AUR62024802 Chenopodium quinoa HOM05D004106 ORTHO05D004381 1.0e-49 200.7 118 89.0
AUR62032418 Chenopodium quinoa HOM05D004106 ORTHO05D004381 1.0e-49 200.7 118 89.0
Actinidia23107 Actinidia chinensis HOM05D004106 ORTHO05D004381 2.3e-49 199.5 113 93.8
BcaC01g01145 Brassica carinata HOM05D004106 ORTHO05D004381 4.0e-49 198.7 157 70.7
Zm00001eb206700 Zea mays HOM05D004106 ORTHO05D004381 6.8e-49 198.0 192 63.0
Aqoxy7G02301 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 8.8e-49 197.6 126 84.1
Cfa013048 Carpinus fangiana HOM05D004106 ORTHO05D004381 2.6e-48 196.1 110 93.6
Psat4g009640 Pisum sativum HOM05D004106 ORTHO05D004381 3.4e-48 195.7 179 64.2
Ah.10g025490 Amaranthus hybridus HOM05D004106 ORTHO05D004381 7.5e-48 194.5 186 65.1
vmacro05152 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 1.7e-47 193.4 208 57.2
Haze_21409 Corylus avellana HOM05D004106 ORTHO05D004381 2.8e-47 192.6 110 91.8
Aqoxy7G02464 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 4.8e-47 191.8 147 72.1
Lalb_Chr12g0198731 Lupinus albus HOM05D004106 ORTHO05D004381 1.4e-46 190.3 113 87.6
MD15G1041000 Malus domestica HOM05D004106 ORTHO05D004381 5.3e-46 188.3 149 70.5
Sabra18G0090100 Salix brachista HOM05D004106 ORTHO05D004381 2.7e-45 186.0 178 60.7
Aa31LG7G12810 Aethionema arabicum HOM05D004106 ORTHO05D004381 2.2e-44 183.0 193 56.0
CANSAT54G0776 Cannabis sativa HOM05D004106 ORTHO05D004381 1.1e-43 180.6 150 65.3
Mapoly0031s0030 Marchantia polymorpha HOM05D004106 ORTHO05D004381 1.1e-43 180.6 147 64.6
Pp3c2_35530 Physcomitrium patens HOM05D004106 ORTHO05D004381 1.9e-43 179.9 180 57.8
Pp3c1_1160 Physcomitrium patens HOM05D004106 ORTHO05D004381 2.5e-43 179.5 145 66.2
SMO364G0386 Selaginella moellendorffii HOM05D004106 ORTHO05D004381 2.5e-43 179.5 108 82.4
Pp3c11_2360 Physcomitrium patens HOM05D004106 ORTHO05D004381 2.7e-42 176.0 145 62.8
Haze_19171 Corylus avellana HOM05D004106 ORTHO05D004381 3.6e-42 175.6 108 86.1
Thecc.09G028700 Theobroma cacao HOM05D004106 ORTHO05D004381 5.2e-41 171.8 145 70.3
FAN20G0773 Fragaria x ananassa HOM05D004106 ORTHO05D004381 4.4e-40 168.7 148 66.2
Nitab4.5_0002891g0090 Nicotiana tabacum HOM05D004106 ORTHO05D004381 4.4e-40 168.7 182 57.7
MELO3C010214.2 Cucumis melo HOM05D004106 ORTHO05D004381 9.8e-40 167.5 150 65.3
Nitab4.5_0008875g0050 Nicotiana tabacum HOM05D004106 ORTHO05D004381 1.3e-39 167.2 190 56.3
Hma1.2p1_2680F.1_g326820 Hydrangea macrophylla HOM05D004106 ORTHO05D004381 3.7e-39 165.6 152 64.5
Nn8g39925 Nelumbo nucifera HOM05D004106 ORTHO05D004381 6.3e-39 164.9 180 60.0
CBR_g54183 Chara braunii HOM05D004106 ORTHO05D004381 1.7e-36 156.8 110 70.9
Rhsim07G0165600 Rhododendron simsii HOM05D004106 ORTHO05D004381 2.3e-36 156.4 351 37.0
CBR_g728 Chara braunii HOM05D004106 ORTHO05D004381 5.0e-36 155.2 110 71.8
Sc09g0010670 Simmondsia chinensis HOM05D004106 ORTHO05D004381 4.7e-34 148.7 135 67.4
Zm00001eb234060 Zea mays HOM05D004106 ORTHO05D004381 1.0e-33 147.5 192 52.6
AagrBONN_evm.TU.Sc2ySwM_228.5744 Anthoceros agrestis HOM05D004106 ORTHO05D004381 1.5e-32 143.7 129 62.0
Actinidia38669 Actinidia chinensis HOM05D004106 ORTHO05D004381 5.4e-30 135.2 138 60.1
PRCOL_00004350 Prasinoderma coloniale HOM05D004106 ORTHO05D004381 8.6e-28 127.9 109 58.7
Cre10.g458550 Chlamydomonas reinhardtii HOM05D004106 ORTHO05D004381 2.3e-25 119.8 141 48.9
Gohir.D07G031300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 2.2e-23 113.2 108 62.0
BraA02t07117Z Brassica rapa HOM05D004106 ORTHO05D004381 2.4e-22 109.8 91 65.9
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 3.2e-22 109.4 99 63.6
A02p20860 Brassica napus HOM05D004106 ORTHO05D004381 2.7e-21 106.3 86 66.3
C02p32810 Brassica napus HOM05D004106 ORTHO05D004381 7.8e-21 104.8 87 67.8
QL02p018811 Quercus lobata HOM05D004106 ORTHO05D004381 3.9e-20 102.4 95 67.4
BcaC03g15698 Brassica carinata HOM05D004106 ORTHO05D004381 5.0e-20 102.1 87 66.7
BolC2t09418H Brassica oleracea HOM05D004106 ORTHO05D004381 5.0e-20 102.1 87 66.7
Peaxi162Scf00387g00211 Petunia axillaris HOM05D004106 ORTHO05D004381 3.2e-14 82.8 88 54.5
BcaB01g01386 Brassica carinata HOM05D004106 ORTHO05D005755 7.1e-14 81.6 49 83.7
CARHR238490 Cardamine hirsuta HOM05D004106 ORTHO05D004381 7.1e-14 81.6 47 85.1
SEGI_18679 Sequoiadendron giganteum HOM05D004106 ORTHO05D004381 7.1e-14 81.6 44 95.5
Lsat_1_v5_gn_7_47460 Lactuca sativa HOM05D004106 ORTHO05D002137 2.6e-08 63.2 38 81.6


User provided reference genes

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