Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G02171 Striga asiatica HOM05D005427 ORTHO05D006461 7.7e-115 417.2 209 100.0
SGA_v2.0_scaffold147G36350 Striga asiatica HOM05D005427 ORTHO05D006461 2.0e-110 402.5 209 95.2
SGA_v2.0_scaffold70G23436 Striga asiatica HOM05D005427 ORTHO05D006461 6.1e-80 301.2 224 70.1
Migut.F01758 Erythranthe guttata HOM05D005427 ORTHO05D006461 8.9e-63 244.2 226 58.4
GSVIVG01017423001 Vitis vinifera HOM05D005427 ORTHO05D006461 8.9e-55 217.6 225 49.8
CSS0026502 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 2.9e-53 212.6 222 50.9
Dinv36993 Davidia involucrata HOM05D005427 ORTHO05D006461 3.2e-52 209.1 219 50.2
CSS0032221 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 7.8e-51 204.5 224 47.3
CSS0024088 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 6.6e-50 201.4 224 46.9
Potri.017G091300 Populus trichocarpa HOM05D005427 ORTHO05D006461 5.6e-49 198.4 225 44.9
QL06p037683 Quercus lobata HOM05D005427 ORTHO05D006461 5.6e-49 198.4 221 47.1
Sopen09g003480 Solanum pennellii HOM05D005427 ORTHO05D006461 9.5e-49 197.6 223 47.1
Solyc09g008680.4 Solanum lycopersicum HOM05D005427 ORTHO05D006461 1.2e-48 197.2 223 46.6
Ciclev10026408m.g Citrus clementina HOM05D005427 ORTHO05D006461 2.8e-48 196.1 221 47.1
TAR628G1492 Trochodendron aralioides HOM05D001631 ORTHO05D001591 3.6e-48 195.7 222 45.5
PGSC0003DMG400012980 Solanum tuberosum HOM05D005427 ORTHO05D006461 4.7e-48 195.3 220 47.3
TWI74G0676 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 1.2e-46 190.7 221 44.8
Atru.chr3.1127 Acer truncatum HOM05D005427 ORTHO05D006461 1.5e-46 190.3 221 46.6
Atru.chr3.1136 Acer truncatum HOM05D005427 ORTHO05D006461 1.5e-46 190.3 221 46.6
Prupe.6G211100 Prunus persica HOM05D005427 ORTHO05D006461 1.5e-46 190.3 218 45.4
Dinv21205 Davidia involucrata HOM05D005427 ORTHO05D006461 2.0e-46 189.9 208 51.0
CAN.G1830.8 Capsicum annuum HOM05D005427 ORTHO05D006461 2.6e-46 189.5 223 46.6
PGR102G2470 Punica granatum HOM05D005427 ORTHO05D006461 3.4e-46 189.1 231 44.6
FvH4_1g18830 Fragaria vesca HOM05D005427 ORTHO05D006461 9.9e-46 187.6 220 43.6
RcHm_v2.0_Chr2g0109701 Rosa chinensis HOM05D005427 ORTHO05D006461 1.3e-45 187.2 218 45.9
Rhsim07G0122400 Rhododendron simsii HOM05D005427 ORTHO05D006461 1.7e-45 186.8 235 43.4
Gohir.A11G206966 Gossypium hirsutum HOM05D005427 ORTHO05D006461 3.8e-45 185.7 221 48.0
Thecc.01G082100 Theobroma cacao HOM05D005427 ORTHO05D006461 8.4e-45 184.5 221 45.2
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 1.1e-44 184.1 227 44.5
ClCG09G016510 Citrullus lanatus HOM05D005427 ORTHO05D006461 3.2e-44 182.6 211 44.5
Nn1g05775 Nelumbo nucifera HOM05D005427 ORTHO05D006461 3.2e-44 182.6 222 44.6
Aqoxy3G03178 Aquilegia oxysepala HOM05D005427 ORTHO05D006461 9.2e-44 181.0 211 46.4
COL.COLO4_11665 Corchorus olitorius HOM05D005427 ORTHO05D006461 1.2e-43 180.6 219 44.7
Gorai.007G232600 Gossypium raimondii HOM05D005427 ORTHO05D006461 2.1e-43 179.9 221 47.1
FAN23G0196 Fragaria x ananassa HOM05D005427 ORTHO05D006461 7.8e-43 177.9 230 41.3
CiPaw.08G147100 Carya illinoinensis HOM05D005427 ORTHO05D006461 2.3e-42 176.4 222 41.4
Lj3g0020172 Lotus japonicus HOM05D005427 ORTHO05D006461 3.0e-42 176.0 230 42.6
Lalb_Chr04g0263231 Lupinus albus HOM05D005427 ORTHO05D006461 3.9e-42 175.6 214 46.3
Manes.13G105100 Manihot esculenta HOM05D005427 ORTHO05D006461 3.9e-42 175.6 214 42.5
Sed0018601 Sechium edule HOM05D005427 ORTHO05D006461 8.7e-42 174.5 212 41.5
CsaV3_7G007450 Cucumis sativus L. HOM05D005427 ORTHO05D006461 1.1e-41 174.1 215 42.3
ECA233G5189 Erigeron canadensis HOM05D005427 ORTHO05D006461 1.1e-41 174.1 214 44.4
MELO3C018556.2 Cucumis melo HOM05D005427 ORTHO05D006461 1.9e-41 173.3 215 42.3
TAR376G0349 Trochodendron aralioides HOM05D005427 ORTHO05D006461 4.3e-41 172.2 215 41.4
Cfa001616 Carpinus fangiana HOM05D005427 ORTHO05D006461 9.6e-41 171.0 231 41.6
THA.LOC104819282 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 1.6e-40 170.2 219 41.1
HanXRQChr12g0368771 Helianthus annuus HOM05D005427 ORTHO05D006461 1.8e-39 166.8 207 44.0
RcHm_v2.0_Chr5g0054161 Rosa chinensis HOM05D005427 ORTHO05D006461 2.4e-39 166.4 218 43.1
DCAR_006436 Daucus carota HOM05D005427 ORTHO05D006461 3.1e-39 166.0 202 47.5
Phvul.003G285200 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 3.1e-39 166.0 221 41.6
Gohir.D11G216500 Gossypium hirsutum HOM05D005427 ORTHO05D006461 6.9e-39 164.9 207 46.9
FAN19G1732 Fragaria x ananassa HOM05D005427 ORTHO05D006461 9.0e-39 164.5 249 37.8
vmacro07282 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 9.0e-39 164.5 210 45.7
Eucgr.H02348 Eucalyptus grandis HOM05D005427 ORTHO05D006461 1.2e-38 164.1 229 39.7
Nitab4.5_0004281g0090 Nicotiana tabacum HOM05D005427 ORTHO05D006461 1.2e-38 164.1 220 43.2
Ah.01g015840 Amaranthus hybridus HOM05D005427 ORTHO05D006461 1.5e-38 163.7 203 43.8
AUR62041740 Chenopodium quinoa HOM05D005427 ORTHO05D006461 2.0e-38 163.3 201 46.8
AT3G49645 Arabidopsis thaliana HOM05D005427 ORTHO05D006461 2.6e-38 162.9 223 43.0
CANSAT01G2304 Cannabis sativa HOM05D005427 ORTHO05D006461 7.6e-38 161.4 221 40.7
Phvul.003G285800 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 1.3e-37 160.6 219 41.1
Carub.0005s1599 Capsella rubella HOM05D005427 ORTHO05D006461 1.7e-37 160.2 214 41.1
AL7G47510 Arabidopsis lyrata HOM05D005427 ORTHO05D006461 2.2e-37 159.8 227 41.4
Sc06g0009050 Simmondsia chinensis HOM05D005427 ORTHO05D006461 4.9e-37 158.7 185 44.9
Glyma.08G273000 Glycine max HOM05D005427 ORTHO05D006461 8.4e-37 157.9 223 41.7
AUR62019836 Chenopodium quinoa HOM05D005427 ORTHO05D006461 1.9e-36 156.8 199 43.7
AUR62024067 Chenopodium quinoa HOM05D005427 ORTHO05D006461 1.9e-36 156.8 201 43.8
Thhalv10019696m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 1.9e-36 156.8 220 42.3
EL10Ac9g20957 Beta vulgaris HOM05D005427 ORTHO05D006461 2.4e-36 156.4 199 44.2
Thhalv10010700m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 3.2e-36 156.0 219 42.0
Hund15020 Selenicereus undatus HOM05D005427 ORTHO05D006461 5.4e-36 155.2 202 42.1
TPR.G15264 Trifolium pratense HOM05D005427 ORTHO05D006461 7.1e-36 154.8 233 39.9
Cpa.g.sc3.369 Carica papaya HOM05D005427 ORTHO05D006461 9.3e-36 154.5 219 41.6
Hund13132 Selenicereus undatus HOM05D005427 ORTHO05D006461 2.1e-35 153.3 200 41.5
PSO761G0697 Papaver somniferum HOM05D005427 ORTHO05D006461 4.6e-35 152.1 220 36.8
Sp5g12450 Schrenkiella parvula HOM05D005427 ORTHO05D006461 3.9e-34 149.1 219 39.3
THA.LOC104799739 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 3.9e-34 149.1 227 37.4
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 5.1e-34 148.7 224 37.1
AUR62012052 Chenopodium quinoa HOM05D005427 ORTHO05D006461 5.1e-34 148.7 200 43.5
Duzib264G0001 Durio zibethinus HOM05D005427 ORTHO05D006461 1.1e-33 147.5 179 44.1
Peaxi162Scf00500g00116 Petunia axillaris HOM05D005427 ORTHO05D006461 3.3e-33 146.0 206 41.7
vmacro05473 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 7.3e-33 144.8 256 35.9
BraA07t29893Z Brassica rapa HOM05D005427 ORTHO05D006461 9.6e-33 144.4 219 38.4
CARHR158680 Cardamine hirsuta HOM05D005427 ORTHO05D006461 1.6e-32 143.7 217 39.6
Peaxi162Scf01051g00142 Petunia axillaris HOM05D005427 ORTHO05D006461 2.1e-32 143.3 223 42.2
BcaB01g00686 Brassica carinata HOM05D005427 ORTHO05D006461 2.8e-32 142.9 216 38.4
Psat4g120800 Pisum sativum HOM05D005427 ORTHO05D006461 3.6e-32 142.5 244 37.3
Aa31LG4G18120 Aethionema arabicum HOM05D005427 ORTHO05D006461 6.2e-32 141.7 220 35.0
A06p28350 Brassica napus HOM05D005427 ORTHO05D006461 1.1e-31 141.0 218 37.6
BraA06t25777Z Brassica rapa HOM05D005427 ORTHO05D006461 1.1e-31 141.0 218 37.6
BcaC01g02424 Brassica carinata HOM05D005427 ORTHO05D006461 1.4e-31 140.6 218 37.6
C03p65440 Brassica napus HOM05D005427 ORTHO05D006461 1.4e-31 140.6 218 37.6
BolC3t18796H Brassica oleracea HOM05D005427 ORTHO05D006461 1.4e-31 140.6 218 37.6
Ah.01g003640 Amaranthus hybridus HOM05D000109 ORTHO05D000520 1.8e-31 140.2 200 39.0
AL5G29490 Arabidopsis lyrata HOM05D007023 ORTHO05D008684 3.1e-31 139.4 209 39.7
Hma1.2p1_0561F.1_g178960 Hydrangea macrophylla HOM05D005427 ORTHO05D006461 5.3e-31 138.7 113 60.2
Hund00873 Selenicereus undatus HOM05D005427 ORTHO05D006461 5.3e-31 138.7 189 41.3
BcaC07g39428 Brassica carinata HOM05D005427 ORTHO05D006461 2.0e-30 136.7 214 36.9
Glyma.20G162400 Glycine max HOM05D005427 ORTHO05D006461 4.5e-30 135.6 208 38.5
Zm00001eb210960 Zea mays HOM05D005427 ORTHO05D006461 1.3e-29 134.0 218 35.3
A07p22100 Brassica napus HOM05D005427 ORTHO05D006461 4.9e-29 132.1 239 35.1
PSO210G5957 Papaver somniferum HOM05D005427 ORTHO05D006461 8.4e-29 131.3 206 35.9
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 4.2e-28 129.0 239 36.0
Os10g0360900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 5.4e-28 128.6 217 32.3
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 7.1e-28 128.3 242 35.5
MD01G1046300 Malus domestica HOM05D005427 ORTHO05D006461 7.1e-28 128.3 179 40.2
Haze_16903 Corylus avellana HOM05D005427 ORTHO05D006461 1.8e-26 123.6 229 37.1
Lsat_1_v5_gn_8_18901 Lactuca sativa HOM05D005427 ORTHO05D006461 2.3e-26 123.2 222 36.5
Zm00001eb064010 Zea mays HOM05D005427 ORTHO05D006461 2.3e-26 123.2 239 33.1
BraA06t24896Z Brassica rapa HOM05D007023 ORTHO05D008684 3.0e-26 122.9 205 35.1
Medtr8g067265 Medicago truncatula HOM05D005427 ORTHO05D006461 3.0e-26 122.9 219 34.7
Phvul.002G065300 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 3.0e-26 122.9 176 38.6
HPP92_024834 Vanilla planifolia HOM05D005427 ORTHO05D006461 5.1e-26 122.1 228 29.8
HPP92_026626 Vanilla planifolia HOM05D005427 ORTHO05D006461 5.1e-26 122.1 228 29.8
C08p24660 Brassica napus HOM05D007023 ORTHO05D008684 3.3e-25 119.4 200 36.5
BolC8t50081H Brassica oleracea HOM05D007023 ORTHO05D008684 3.3e-25 119.4 200 36.5
FAN27G1155 Fragaria x ananassa HOM05D005427 ORTHO05D006461 3.3e-25 119.4 219 34.2
TWI77G0140 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 3.3e-25 119.4 116 47.4
BcaB02g09598 Brassica carinata HOM05D005427 ORTHO05D006461 1.1e-23 114.4 208 37.5
FAN26G2664 Fragaria x ananassa HOM05D005427 ORTHO05D006461 4.0e-23 112.5 218 33.0
Sabra17G0080400 Salix brachista HOM05D005427 ORTHO05D006461 6.9e-23 111.7 195 34.9
A06p18060 Brassica napus HOM05D007023 ORTHO05D008684 3.4e-22 109.4 190 35.3
Os07g0264900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 5.8e-22 108.6 180 35.0
Pp3c24_9930 Physcomitrium patens HOM05D005427 ORTHO05D006461 5.8e-22 108.6 223 31.8
Cc09_g03000 Coffea canephora HOM05D005427 ORTHO05D006461 1.0e-21 107.8 131 48.9
SalBow7G4264 Salvia bowleyana HOM05D005427 ORTHO05D006461 3.8e-21 105.9 110 50.0
EL10Ac6g13479 Beta vulgaris HOM05D005427 ORTHO05D006461 8.4e-21 104.8 169 36.7
VMungo1309G2225 Vigna mungo HOM05D005427 ORTHO05D006461 1.9e-20 103.6 121 46.3
AagrBONN_evm.TU.Sc2ySwM_228.2937 Anthoceros agrestis HOM05D005427 ORTHO05D006461 4.2e-20 102.4 207 30.9
SMO367G1008 Selaginella moellendorffii HOM05D005427 ORTHO05D006461 2.1e-19 100.1 166 35.5
Nitab4.5_0006709g0040 Nicotiana tabacum HOM05D005427 ORTHO05D006461 1.8e-18 97.1 83 51.8
MSTRG.375 Avicennia marina HOM05D005427 ORTHO05D006461 7.4e-17 91.7 82 54.9
Cc09_g02990 Coffea canephora HOM05D005427 ORTHO05D006461 6.2e-16 88.6 95 44.2
CSS0003252 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 1.5e-14 84.0 70 60.0
Rhsim10G0082400 Rhododendron simsii HOM05D005427 ORTHO05D006461 2.2e-13 80.1 67 56.7
Ah.16g109230 Amaranthus hybridus HOM05D005427 ORTHO05D006461 1.1e-12 77.8 105 39.0
Carub.0005s0959 Capsella rubella HOM05D005427 ORTHO05D006461 1.1e-12 77.8 65 58.5
MD00G1139600 Malus domestica HOM05D005427 ORTHO05D006461 3.2e-12 76.3 57 63.2
MD04G1240700 Malus domestica HOM05D005427 ORTHO05D006461 3.2e-12 76.3 57 63.2
MBI16_g26727_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 1.3e-10 70.9 66 50.0
Actinidia11934 Actinidia chinensis HOM05D005427 ORTHO05D006461 6.7e-10 68.6 95 46.3
SEGI_00262 Sequoiadendron giganteum HOM05D005427 ORTHO05D006461 6.7e-10 68.6 63 52.4
AagrBONN_evm.TU.Sc2ySwM_344.3300 Anthoceros agrestis HOM05D005427 ORTHO05D006461 2.6e-06 56.6 62 43.5
Mapoly0085s0034 Marchantia polymorpha HOM05D005427 ORTHO05D006461 4.5e-06 55.8 208 25.5


User provided reference genes

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