Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 1.1e-98 363.2 181 100.0
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 9.0e-96 353.6 181 95.6
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 7.1e-93 344.0 179 93.9
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 1.0e-91 340.1 178 93.3
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 2.0e-87 325.9 181 87.8
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 1.1e-85 320.1 181 87.3
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 1.9e-85 319.3 181 85.6
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 2.5e-85 318.9 179 87.7
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 5.5e-85 317.8 179 87.7
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 9.4e-85 317.0 181 86.2
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 1.2e-84 316.6 179 85.5
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 2.1e-84 315.8 181 86.2
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 3.6e-84 315.1 181 85.1
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 4.6e-84 314.7 179 86.6
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 4.6e-84 314.7 179 85.5
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 4.6e-84 314.7 179 86.6
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 7.9e-84 313.9 181 85.1
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 1.4e-83 313.2 179 85.5
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.8e-83 312.8 179 84.9
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 1.8e-83 312.8 181 85.1
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 2.3e-83 312.4 179 85.5
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 2.3e-83 312.4 181 84.5
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 3.0e-83 312.0 179 85.5
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.1e-82 310.1 179 84.4
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 2.0e-82 309.3 181 83.4
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 2.0e-82 309.3 168 91.1
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 2.5e-82 308.9 181 82.9
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 2.5e-82 308.9 179 83.2
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 3.3e-82 308.5 181 84.5
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 7.4e-82 307.4 176 84.1
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 7.4e-82 307.4 168 89.9
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 7.4e-82 307.4 176 85.2
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 7.4e-82 307.4 181 82.9
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 7.4e-82 307.4 179 84.4
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 9.7e-82 307.0 181 81.8
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 9.7e-82 307.0 176 85.2
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 9.7e-82 307.0 176 85.2
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 1.3e-81 306.6 176 84.7
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 1.3e-81 306.6 179 84.4
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 1.7e-81 306.2 181 81.8
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 1.7e-81 306.2 179 83.2
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 1.7e-81 306.2 179 83.2
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 1.7e-81 306.2 181 82.9
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 2.2e-81 305.8 181 82.3
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 3.7e-81 305.1 179 83.2
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 3.7e-81 305.1 181 81.2
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 3.7e-81 305.1 181 81.8
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 3.7e-81 305.1 176 85.2
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 4.8e-81 304.7 181 81.8
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 4.8e-81 304.7 182 81.9
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 8.2e-81 303.9 183 82.5
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 1.1e-80 303.5 181 81.2
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 1.1e-80 303.5 179 82.1
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 1.1e-80 303.5 181 81.8
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 1.4e-80 303.1 181 81.2
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 1.4e-80 303.1 181 81.2
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 1.4e-80 303.1 179 81.6
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 1.8e-80 302.8 181 81.2
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 1.8e-80 302.8 179 84.4
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 2.4e-80 302.4 179 81.0
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 3.1e-80 302.0 181 81.2
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 6.9e-80 300.8 181 80.7
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 6.9e-80 300.8 181 80.7
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 6.9e-80 300.8 176 83.5
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 6.9e-80 300.8 176 81.8
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 1.5e-79 299.7 181 81.2
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 1.5e-79 299.7 170 87.6
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 2.0e-79 299.3 168 86.9
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 2.6e-79 298.9 179 82.1
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 3.4e-79 298.5 177 81.9
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 1.3e-78 296.6 182 80.2
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 1.3e-78 296.6 181 80.1
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 2.2e-78 295.8 177 81.9
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 2.2e-78 295.8 177 81.9
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 2.2e-78 295.8 177 81.9
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 3.8e-78 295.0 180 80.6
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 5.0e-78 294.7 166 88.6
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 6.5e-78 294.3 177 81.4
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 8.5e-78 293.9 180 80.0
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 8.5e-78 293.9 177 83.6
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 1.1e-77 293.5 182 79.7
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 1.4e-77 293.1 181 79.0
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 3.2e-77 292.0 181 79.6
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 4.2e-77 291.6 166 85.5
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 9.4e-77 290.4 175 81.7
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 1.6e-76 289.7 174 82.2
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.6e-76 289.7 174 82.2
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 2.1e-76 289.3 181 79.6
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 2.1e-76 289.3 169 84.0
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 2.7e-76 288.9 174 80.5
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 2.7e-76 288.9 178 80.3
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 6.1e-76 287.7 180 79.4
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 1.4e-75 286.6 181 78.5
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 1.4e-75 286.6 201 73.1
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.4e-75 286.6 179 77.7
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.4e-75 286.6 179 77.7
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 1.4e-75 286.6 180 79.4
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 3.9e-75 285.0 179 80.4
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 5.1e-75 284.6 168 83.3
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 6.7e-75 284.3 178 79.2
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 8.8e-75 283.9 168 82.7
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 8.8e-75 283.9 175 81.1
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 1.1e-74 283.5 180 78.9
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 1.1e-74 283.5 181 77.3
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 4.4e-74 281.6 169 82.2
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 4.4e-74 281.6 178 78.1
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 5.7e-74 281.2 180 78.3
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 7.4e-74 280.8 174 79.3
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 9.7e-74 280.4 183 77.0
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 9.7e-74 280.4 183 77.0
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 1.3e-73 280.0 174 79.3
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 2.8e-73 278.9 170 81.2
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 4.8e-73 278.1 178 77.5
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 1.4e-72 276.6 181 76.2
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 5.3e-72 274.6 200 71.0
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 7.7e-71 270.8 168 81.0
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 7.7e-71 270.8 181 76.8
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 7.7e-71 270.8 168 80.4
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 1.7e-70 269.6 178 75.8
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 5.0e-70 268.1 181 75.7
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 5.5e-69 264.6 178 75.3
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 7.2e-69 264.2 161 81.4
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 9.4e-69 263.8 180 74.4
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 2.0e-66 256.1 182 71.4
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 3.3e-66 255.4 167 72.5
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 4.8e-65 251.5 179 70.4
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 1.2e-63 246.9 165 71.5
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 3.5e-63 245.4 148 83.1
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 7.7e-63 244.2 150 82.0
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 1.9e-61 239.6 258 52.7
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 4.2e-61 238.4 169 67.5
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 5.5e-61 238.0 176 64.8
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 8.8e-59 230.7 181 68.0
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 3.7e-57 225.3 166 65.7
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 8.3e-49 197.6 168 58.9
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 5.4e-48 194.9 128 75.8
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 4.4e-42 175.3 172 57.6
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 5.9e-39 164.9 102 82.4
TAR383G0062 Trochodendron aralioides HOM05D004383 ORTHO05D005050 3.4e-34 149.1 102 75.5
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 4.9e-33 145.2 116 67.2
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 3.0e-30 136.0 79 84.8
MCO09G762 Micromonas commoda HOM05D004383 ORTHO05D005050 1.2e-28 130.6 179 39.1
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 1.2e-28 130.6 175 40.0
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 2.2e-25 119.8 67 80.6
arahy.Tifrunner.gnm1.ann1.76P32W Arachis hypogaea HOM05D004383 ORTHO05D005050 3.7e-25 119.0 75 78.7
arahy.Tifrunner.gnm1.ann1.90HH72 Arachis hypogaea HOM05D004383 ORTHO05D005050 3.7e-25 119.0 75 78.7
Oeu048647.1 Olea europaea HOM05D004383 ORTHO05D005050 7.8e-23 111.3 62 88.7
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.2e-20 104.0 57 82.5
Cfa024789 Carpinus fangiana HOM05D004383 ORTHO05D005050 4.0e-19 99.0 165 35.8
DCAR_031730 Daucus carota HOM05D004383 ORTHO05D005050 5.2e-19 98.6 100 55.0
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 2.0e-18 96.7 209 38.3
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 7.5e-18 94.7 54 85.2
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 3.7e-17 92.4 84 57.1
Cre07.g351700 Chlamydomonas reinhardtii HOM05D004383 ORTHO05D005050 2.4e-16 89.7 169 33.1
Lalb_Chr15g0080471 Lupinus albus HOM05D004383 ORTHO05D005050 1.8e-11 73.6 90 47.8
C03p33160 Brassica napus HOM05D004383 ORTHO05D005050 3.4e-10 69.3 38 84.2
BolC3t15641H Brassica oleracea HOM05D004383 ORTHO05D005050 3.4e-10 69.3 38 84.2
Atru.chr7.2578 Acer truncatum HOM05D004610 ORTHO05D001148 4.4e-10 68.9 52 67.3
Atru.chr7.2585 Acer truncatum HOM05D004383 ORTHO05D005050 7.6e-10 68.2 45 71.1
arahy.Tifrunner.gnm1.ann1.54XXT5 Arachis hypogaea HOM05D004383 ORTHO05D005050 4.9e-09 65.5 60 61.7
Lalb_Chr10g0093521 Lupinus albus HOM05D004383 ORTHO05D005050 1.1e-08 64.3 38 84.2
Lalb_Chr15g0078021 Lupinus albus HOM05D004383 ORTHO05D005050 1.1e-08 64.3 88 46.6
BcaB07g33518 Brassica carinata HOM05D001184 ORTHO05D005050 2.4e-08 63.2 43 74.4
MD10G1133700 Malus domestica HOM05D004383 ORTHO05D005050 3.5e-07 59.3 63 54.0
Lalb_Chr01g0013281 Lupinus albus HOM05D004383 ORTHO05D005050 1.3e-06 57.4 50 62.0
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 1.3e-06 57.4 30 80.0
MD10G1176800 Malus domestica HOM05D004383 ORTHO05D005050 1.7e-06 57.0 42 66.7
MD03G1162600 Malus domestica HOM05D004383 ORTHO05D005050 8.7e-06 54.7 43 65.1


User provided reference genes

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