Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G02131 Striga asiatica HOM05D004052 ORTHO05D004694 6.9e-138 494.2 293 100.0
Eucgr.L01921 Eucalyptus grandis HOM05D004052 ORTHO05D004694 9.9e-44 181.4 338 42.0
Sabra16G0248900 Salix brachista HOM05D004052 ORTHO05D004694 9.9e-44 181.4 323 44.0
Eucgr.L01015 Eucalyptus grandis HOM05D004052 ORTHO05D004694 1.7e-43 180.6 327 42.5
SGA_v2.0_scaffold130G34232 Striga asiatica HOM05D004052 ORTHO05D004694 1.4e-42 177.6 293 53.2
FAN21G2550 Fragaria x ananassa HOM05D004052 ORTHO05D004694 2.4e-42 176.8 339 41.3
Eucgr.E02731 Eucalyptus grandis HOM05D004052 ORTHO05D004694 3.2e-42 176.4 327 41.0
FAN16G0069 Fragaria x ananassa HOM05D004052 ORTHO05D004694 5.4e-42 175.6 337 41.5
FvH4_3g16600 Fragaria vesca HOM05D004052 ORTHO05D004694 9.3e-42 174.9 339 41.3
FAN11G2946 Fragaria x ananassa HOM05D004052 ORTHO05D004694 9.3e-42 174.9 339 41.3
MD05G1208600 Malus domestica HOM05D004052 ORTHO05D004694 2.1e-41 173.7 341 40.8
MSTRG.12848 Avicennia marina HOM05D004052 ORTHO05D004694 6.0e-41 172.2 341 41.6
RcHm_v2.0_Chr5g0027741 Rosa chinensis HOM05D004052 ORTHO05D004694 1.3e-40 171.0 339 40.4
Atru.chr2.1894 Acer truncatum HOM05D004052 ORTHO05D004694 1.8e-40 170.6 341 42.5
Prupe.4G148800 Prunus persica HOM05D004052 ORTHO05D004694 1.8e-40 170.6 345 40.6
GSVIVG01038086001 Vitis vinifera HOM05D004052 ORTHO05D004694 5.1e-40 169.1 327 42.5
Ca_03392_v3 Cicer arietinum L. HOM05D004052 ORTHO05D004694 8.7e-40 168.3 321 40.8
Ca_29679_v3 Cicer arietinum L. HOM05D004052 ORTHO05D004694 8.7e-40 168.3 321 40.8
Migut.H02078 Erythranthe guttata HOM05D004052 ORTHO05D004694 1.9e-39 167.2 297 44.8
Actinidia35175 Actinidia chinensis HOM05D004052 ORTHO05D004694 4.3e-39 166.0 323 48.9
ECA234G3832 Erigeron canadensis HOM05D004052 ORTHO05D004694 9.6e-39 164.9 327 40.1
CSS0033427 Camellia sinensis var. sinensis HOM05D004052 ORTHO05D004694 1.3e-38 164.5 339 46.3
Migut.M00589 Erythranthe guttata HOM05D004052 ORTHO05D004694 1.6e-38 164.1 327 43.1
Cc05_g10320 Coffea canephora HOM05D004052 ORTHO05D004694 2.8e-38 163.3 343 46.6
QL04p070259 Quercus lobata HOM05D004052 ORTHO05D004694 4.8e-38 162.5 341 40.8
Manes.15G101600 Manihot esculenta HOM05D004052 ORTHO05D004694 6.2e-38 162.2 338 38.8
Medtr2g070730 Medicago truncatula HOM05D004052 ORTHO05D004694 6.2e-38 162.2 334 45.2
Dinv13312 Davidia involucrata HOM05D004052 ORTHO05D004694 8.1e-38 161.8 325 47.7
Oeu001302.1 Olea europaea HOM05D004052 ORTHO05D004694 8.1e-38 161.8 366 38.0
PGSC0003DMG400027647 Solanum tuberosum HOM05D004052 ORTHO05D004694 8.1e-38 161.8 332 47.6
Actinidia04591 Actinidia chinensis HOM05D004052 ORTHO05D004694 1.1e-37 161.4 330 47.0
Cpa.g.sc77.96 Carica papaya HOM05D004052 ORTHO05D004694 1.4e-37 161.0 328 39.0
HanXRQChr10g0305751 Helianthus annuus HOM05D004052 ORTHO05D004694 2.4e-37 160.2 330 38.8
Nitab4.5_0001662g0050 Nicotiana tabacum HOM05D004052 ORTHO05D004694 6.9e-37 158.7 337 41.2
Potri.001G377900 Populus trichocarpa HOM05D004052 ORTHO05D004694 1.2e-36 157.9 329 40.1
Gohir.A04G046520 Gossypium hirsutum HOM05D004052 ORTHO05D004694 1.5e-36 157.5 319 40.4
PSO541G0468 Papaver somniferum HOM05D004052 ORTHO05D004694 2.0e-36 157.1 335 39.1
TAR629G3304 Trochodendron aralioides HOM05D004052 ORTHO05D004694 2.0e-36 157.1 332 37.7
RhsimUnG0204400 Rhododendron simsii HOM05D004052 ORTHO05D004694 2.6e-36 156.8 331 45.9
vmacro12015 Vaccinium macrocarpon HOM05D004052 ORTHO05D004694 3.4e-36 156.4 310 45.8
Nitab4.5_0000639g0180 Nicotiana tabacum HOM05D004052 ORTHO05D004694 4.5e-36 156.0 306 47.4
Gohir.A07G155810 Gossypium hirsutum HOM05D004052 ORTHO05D004694 1.0e-35 154.8 320 45.9
Hma1.2p1_1456F.1_g284600 Hydrangea macrophylla HOM05D004052 ORTHO05D004694 1.0e-35 154.8 316 45.9
COL.COLO4_17418 Corchorus olitorius HOM05D004052 ORTHO05D004694 1.3e-35 154.5 337 46.9
CAN.G1003.5 Capsicum annuum HOM05D004052 ORTHO05D004694 2.2e-35 153.7 330 45.5
Gohir.D01G029700 Gossypium hirsutum HOM05D004052 ORTHO05D004694 2.2e-35 153.7 338 45.9
Gorai.002G038800 Gossypium raimondii HOM05D004052 ORTHO05D004694 2.2e-35 153.7 338 45.0
Phvul.005G060700 Phaseolus vulgaris HOM05D004052 ORTHO05D004694 2.9e-35 153.3 337 42.7
Gorai.009G359700 Gossypium raimondii HOM05D004052 ORTHO05D004694 4.9e-35 152.5 320 40.3
PSO675G8138 Papaver somniferum HOM05D004052 ORTHO05D004694 4.9e-35 152.5 336 39.0
Rhsim06G0184900 Rhododendron simsii HOM05D004052 ORTHO05D004694 4.9e-35 152.5 319 45.1
DCAR_019621 Daucus carota HOM05D004052 ORTHO05D004694 8.4e-35 151.8 368 37.8
HanXRQChr12g0373561 Helianthus annuus HOM05D004052 ORTHO05D004694 8.4e-35 151.8 316 39.9
Lsat_1_v5_gn_5_125041 Lactuca sativa HOM05D004052 ORTHO05D004694 8.4e-35 151.8 318 42.5
CANSAT94G0014 Cannabis sativa HOM05D004052 ORTHO05D004694 1.1e-34 151.4 334 42.2
Ciclev10020573m.g Citrus clementina HOM05D004052 ORTHO05D004694 1.1e-34 151.4 335 43.9
Duzib213G0683 Durio zibethinus HOM05D004052 ORTHO05D004694 1.9e-34 150.6 338 47.0
THA.LOC104812292 Tarenaya hassleriana HOM05D004052 ORTHO05D004694 1.9e-34 150.6 308 48.7
Gohir.A01G041900 Gossypium hirsutum HOM05D004052 ORTHO05D004694 2.5e-34 150.2 338 45.6
Thecc.07G146300 Theobroma cacao HOM05D004052 ORTHO05D004694 2.5e-34 150.2 340 46.8
vmacro09432 Vaccinium macrocarpon HOM05D004052 ORTHO05D004694 2.5e-34 150.2 332 44.9
Eucgr.E02738 Eucalyptus grandis HOM05D004052 ORTHO05D004694 4.2e-34 149.4 305 39.0
MD10G1195100 Malus domestica HOM05D004052 ORTHO05D004694 7.1e-34 148.7 332 40.4
Actinidia12841 Actinidia chinensis HOM05D004052 ORTHO05D004694 9.3e-34 148.3 330 45.8
Eucgr.F03205 Eucalyptus grandis HOM05D004052 ORTHO05D004694 2.7e-33 146.7 338 45.9
MSTRG.6718 Avicennia marina HOM05D004052 ORTHO05D004694 7.9e-33 145.2 336 43.8
Glyma.13G259200 Glycine max HOM05D004052 ORTHO05D004694 1.8e-32 144.1 335 39.7
Lalb_Chr25g0285401 Lupinus albus HOM05D004052 ORTHO05D004694 2.3e-32 143.7 338 43.2
Manes.03G091016 Manihot esculenta HOM05D004052 ORTHO05D004694 2.3e-32 143.7 344 36.3
Lj3g0022433 Lotus japonicus HOM05D004052 ORTHO05D004694 8.7e-32 141.7 344 39.0
Nn3g20784 Nelumbo nucifera HOM05D004052 ORTHO05D004694 1.1e-31 141.4 339 36.6
EL10Ac4g08490 Beta vulgaris HOM05D004052 ORTHO05D004694 1.5e-31 141.0 342 37.1
Glyma.15G248900 Glycine max HOM05D004052 ORTHO05D004694 5.7e-31 139.0 338 39.6
Sopen07g029990 Solanum pennellii HOM05D004052 ORTHO05D004694 5.7e-31 139.0 331 44.4
Peaxi162Scf00111g00086 Petunia axillaris HOM05D004052 ORTHO05D004694 7.4e-31 138.7 348 40.2
CARHR017680 Cardamine hirsuta HOM05D004052 ORTHO05D004694 2.1e-30 137.1 312 44.9
AT1G78430 Arabidopsis thaliana HOM05D004052 ORTHO05D004694 2.8e-30 136.7 294 43.2
arahy.Tifrunner.gnm1.ann1.15VG0N Arachis hypogaea HOM05D004052 ORTHO05D004694 3.7e-30 136.3 342 44.2
PGR031G1077 Punica granatum HOM05D004052 ORTHO05D004694 1.1e-29 134.8 337 45.7
unitig_46.g18300 Utricularia gibba HOM05D004052 ORTHO05D004694 1.1e-29 134.8 297 37.4
Solyc07g056650.4 Solanum lycopersicum HOM05D004052 ORTHO05D004694 1.4e-29 134.4 331 43.8
Nitab4.5_0000505g0150 Nicotiana tabacum HOM05D004052 ORTHO05D004694 1.8e-29 134.0 309 45.0
CiPaw.12G045700 Carya illinoinensis HOM05D004052 ORTHO05D004694 4.0e-29 132.9 342 45.3
AL1G29350 Arabidopsis lyrata HOM05D004052 ORTHO05D004694 5.3e-29 132.5 304 43.8
arahy.Tifrunner.gnm1.ann1.SLVF1G Arachis hypogaea HOM05D004052 ORTHO05D004694 5.3e-29 132.5 342 43.6
BcaC05g25666 Brassica carinata HOM05D004052 ORTHO05D004694 5.3e-29 132.5 295 45.1
Sp1g15260 Schrenkiella parvula HOM05D004052 ORTHO05D004694 5.3e-29 132.5 317 43.5
Cfa019455 Carpinus fangiana HOM05D004052 ORTHO05D004694 6.9e-29 132.1 391 41.2
Aa31LG7G1980 Aethionema arabicum HOM05D004052 ORTHO05D004694 1.5e-28 131.0 312 43.3
MBI10_g30421_MAGBIO Magnolia biondii HOM05D004052 ORTHO05D004694 1.5e-28 131.0 338 37.0
Ca_01645_v3 Cicer arietinum L. HOM05D004052 ORTHO05D004694 2.0e-28 130.6 317 36.9
BcaC07g41402 Brassica carinata HOM05D004052 ORTHO05D004694 3.4e-28 129.8 319 44.2
Ah.04g163830 Amaranthus hybridus HOM05D004052 ORTHO05D004694 7.6e-28 128.6 329 36.2
Ah.06g187480 Amaranthus hybridus HOM05D004052 ORTHO05D004694 1.0e-27 128.3 332 35.2
VMungo1080G1119 Vigna mungo HOM05D004052 ORTHO05D004694 1.0e-27 128.3 337 40.1
Peaxi162Scf00000g00572 Petunia axillaris HOM05D004052 ORTHO05D004694 1.7e-27 127.5 305 45.2
Aqoxy7G03971 Aquilegia oxysepala HOM05D004052 ORTHO05D004694 2.2e-27 127.1 345 33.9
Duzib268G0054 Durio zibethinus HOM05D004052 ORTHO05D004694 2.2e-27 127.1 339 44.0
Nn4g26569 Nelumbo nucifera HOM05D004052 ORTHO05D004694 2.9e-27 126.7 344 35.2
BolC5t30258H Brassica oleracea HOM05D004052 ORTHO05D004694 3.8e-27 126.3 295 44.1
AUR62037969 Chenopodium quinoa HOM05D004052 ORTHO05D004694 3.8e-27 126.3 341 39.0
SGA_v2.0_scaffold73G24348 Striga asiatica HOM05D004052 ORTHO05D004694 3.8e-27 126.3 340 44.1
AL2G38800 Arabidopsis lyrata HOM05D004052 ORTHO05D004694 8.4e-27 125.2 289 43.9
Dinv26667 Davidia involucrata HOM05D004052 ORTHO05D004694 1.1e-26 124.8 292 40.4
Nitab4.5_0002495g0040 Nicotiana tabacum HOM05D004052 ORTHO05D004694 1.1e-26 124.8 330 43.3
Haze_08491 Corylus avellana HOM05D004052 ORTHO05D004694 1.4e-26 124.4 392 37.2
A06p13030 Brassica napus HOM05D004052 ORTHO05D004694 1.9e-26 124.0 291 37.8
Hund02320 Selenicereus undatus HOM05D004052 ORTHO05D004694 1.9e-26 124.0 334 41.3
BcaC07g41439 Brassica carinata HOM05D004052 ORTHO05D004694 2.5e-26 123.6 302 45.0
BolC8t51952H Brassica oleracea HOM05D004052 ORTHO05D004694 5.5e-26 122.5 305 44.6
BraA06t24462Z Brassica rapa HOM05D004052 ORTHO05D004694 9.3e-26 121.7 291 45.4
PGSC0003DMG400007841 Solanum tuberosum HOM05D004052 ORTHO05D004694 9.3e-26 121.7 309 44.0
TPR.G22987 Trifolium pratense HOM05D004052 ORTHO05D004694 9.3e-26 121.7 333 43.2
Thhalv10019440m.g Eutrema salsugineum HOM05D004052 ORTHO05D004694 1.2e-25 121.3 292 46.9
C05p15490 Brassica napus HOM05D004052 ORTHO05D004694 1.6e-25 120.9 294 43.9
AT1G17140 Arabidopsis thaliana HOM05D004052 ORTHO05D004694 2.1e-25 120.6 314 43.6
Sc03g0007700 Simmondsia chinensis HOM05D004052 ORTHO05D004694 2.1e-25 120.6 297 43.4
C08p44040 Brassica napus HOM05D004052 ORTHO05D004694 3.5e-25 119.8 304 44.1
Lj1A816T35 Lonicera japonica HOM05D004052 ORTHO05D004694 4.6e-25 119.4 328 44.2
Psat1g001080 Pisum sativum HOM05D004052 ORTHO05D004694 7.9e-25 118.6 321 42.1
A09p60580 Brassica napus HOM05D004052 ORTHO05D004694 1.0e-24 118.2 302 43.0
A07p27520 Brassica napus HOM05D004052 ORTHO05D004694 1.8e-24 117.5 287 36.9
C06p30460 Brassica napus HOM05D004052 ORTHO05D004694 1.8e-24 117.5 287 39.7
BraA07t30394Z Brassica rapa HOM05D004052 ORTHO05D004694 2.3e-24 117.1 285 37.2
BolC6t38209H Brassica oleracea HOM05D004052 ORTHO05D004694 5.1e-24 115.9 287 36.9
BraA09t41428Z Brassica rapa HOM05D004052 ORTHO05D004694 6.7e-24 115.5 297 43.8
unitig_747.g21598 Utricularia gibba HOM05D004052 ORTHO05D004694 6.7e-24 115.5 294 42.9
Oeu020015.2 Olea europaea HOM05D004052 ORTHO05D004694 8.7e-24 115.2 289 40.8
THA.LOC104808079 Tarenaya hassleriana HOM05D004052 ORTHO05D004694 1.9e-23 114.0 297 45.8
Aa31LG4G2530 Aethionema arabicum HOM05D004052 ORTHO05D004694 1.3e-22 111.3 287 34.5
CARHR071950 Cardamine hirsuta HOM05D004052 ORTHO05D004694 1.3e-22 111.3 293 44.0
TPR.G26614 Trifolium pratense HOM05D004052 ORTHO05D004694 1.3e-22 111.3 332 42.2
Carub.0002s2533 Capsella rubella HOM05D004052 ORTHO05D004694 2.2e-22 110.5 294 45.9
CDE02G2317 Ceratophyllum demersum HOM05D004052 ORTHO05D004694 3.7e-22 109.8 319 38.2
Lj8P142T42 Lonicera japonica HOM05D004052 ORTHO05D004694 4.8e-22 109.4 194 52.1
Sopen12g006690 Solanum pennellii HOM05D004052 ORTHO05D004694 4.1e-21 106.3 308 42.2
BcaB03g13016 Brassica carinata HOM05D004052 ORTHO05D004694 1.2e-20 104.8 294 44.9
Solyc12g011360.2 Solanum lycopersicum HOM05D004052 ORTHO05D004694 5.9e-20 102.4 308 42.2
TAR627G0253 Trochodendron aralioides HOM05D004052 ORTHO05D004694 5.9e-20 102.4 274 33.2
BcaB02g07171 Brassica carinata HOM05D004052 ORTHO05D004694 1.3e-19 101.3 293 42.3
Medtr8g008740 Medicago truncatula HOM05D000280 ORTHO05D000632 5.5e-18 95.9 98 59.2
Carub.0001s1687 Capsella rubella HOM05D004052 ORTHO05D004694 1.2e-17 94.7 308 40.6
Oeu006133.1 Olea europaea HOM05D004052 ORTHO05D004694 1.6e-17 94.4 327 33.0
FAN25G3263 Fragaria x ananassa HOM05D004052 ORTHO05D004694 2.7e-17 93.6 109 57.8
Thhalv10008080m.g Eutrema salsugineum HOM05D004052 ORTHO05D004694 8.8e-16 88.6 312 40.1
BcaC07g38832 Brassica carinata HOM05D004052 ORTHO05D004694 2.2e-14 84.0 293 40.3
BolC8t49398H Brassica oleracea HOM05D004052 ORTHO05D004694 2.2e-14 84.0 293 40.3
MD14G1047200 Malus domestica HOM05D004052 ORTHO05D004694 2.8e-14 83.6 174 37.9
C08p17720 Brassica napus HOM05D004052 ORTHO05D004694 8.2e-14 82.0 290 40.0
BcaB07g34049 Brassica carinata HOM05D004052 ORTHO05D004694 1.1e-10 71.6 295 39.0
HPP92_020289 Vanilla planifolia HOM05D004052 ORTHO05D004694 1.2e-09 68.2 343 28.0
CDE10G0657 Ceratophyllum demersum HOM05D004052 ORTHO05D004694 7.9e-09 65.5 271 27.3
ATR0730G143 Amborella trichopoda HOM05D004052 ORTHO05D004694 2.3e-08 63.9 97 49.5
Oeu009879.2 Olea europaea HOM05D004052 ORTHO05D004694 2.0e-07 60.8 208 31.2
A08p31110 Brassica napus HOM05D004052 ORTHO05D004694 4.4e-07 59.7 293 38.6
BraA08t35037Z Brassica rapa HOM05D004052 ORTHO05D004694 4.4e-07 59.7 293 38.6
Zm00001eb152670 Zea mays HOM05D004052 ORTHO05D004694 9.7e-07 58.5 353 31.2
Zm00001eb370640 Zea mays HOM05D004052 ORTHO05D004694 1.7e-06 57.8 349 33.5
Lj5g0006568 Lotus japonicus HOM05D000666 ORTHO05D001727 4.8e-06 56.2 306 27.1


User provided reference genes

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