Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G02121 Striga asiatica HOM05D005394 ORTHO05D006909 0.0e+00 1683.3 903 100.0
MSTRG.15035 Avicennia marina HOM05D005394 ORTHO05D006909 0.0e+00 1253.0 907 76.0
Migut.E01770 Erythranthe guttata HOM05D005394 ORTHO05D006909 0.0e+00 1229.5 905 75.9
Oeu020932.1 Olea europaea HOM05D005394 ORTHO05D006909 0.0e+00 1205.7 964 69.9
Sopen10g003630 Solanum pennellii HOM05D005394 ORTHO05D006909 0.0e+00 1166.0 908 70.7
PGSC0003DMG400021243 Solanum tuberosum HOM05D005394 ORTHO05D006909 0.0e+00 1165.2 909 70.6
Solyc10g007720.4 Solanum lycopersicum HOM05D005394 ORTHO05D006909 0.0e+00 1164.4 908 70.3
unitig_46.g18287 Utricularia gibba HOM05D005394 ORTHO05D006909 0.0e+00 1161.4 906 69.6
Nitab4.5_0003104g0050 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1148.7 916 69.7
Nitab4.5_0002209g0020 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1136.3 903 70.2
Peaxi162Scf00035g02520 Petunia axillaris HOM05D005394 ORTHO05D006909 0.0e+00 1130.9 907 67.8
Cc05_g09680 Coffea canephora HOM05D005394 ORTHO05D006909 0.0e+00 1119.4 913 68.3
Dinv07076 Davidia involucrata HOM05D005394 ORTHO05D006909 0.0e+00 1093.6 869 68.8
TAR626G0164 Trochodendron aralioides HOM05D005394 ORTHO05D006909 0.0e+00 1090.5 903 65.9
Nn8g41245 Nelumbo nucifera HOM05D005394 ORTHO05D006909 0.0e+00 1077.4 901 65.8
GSVIVG01020852001 Vitis vinifera HOM05D005394 ORTHO05D006909 0.0e+00 1076.6 902 66.5
Aqoxy1G01759 Aquilegia oxysepala HOM05D005394 ORTHO05D006909 0.0e+00 1075.1 904 65.2
arahy.Tifrunner.gnm1.ann1.C2BK4Q Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1075.1 896 66.0
Prupe.3G175300 Prunus persica HOM05D005394 ORTHO05D006909 6.2e-312 1073.9 906 64.3
arahy.Tifrunner.gnm1.ann1.3I6JR3 Arachis hypogaea HOM05D005394 ORTHO05D006909 2.7e-310 1068.5 896 65.2
MD09G1149900 Malus domestica HOM05D005394 ORTHO05D006909 4.7e-310 1067.8 907 64.4
HanXRQChr16g0503181 Helianthus annuus HOM05D005394 ORTHO05D006909 1.8e-309 1065.8 903 65.4
RcHm_v2.0_Chr2g0151781 Rosa chinensis HOM05D005394 ORTHO05D006909 1.3e-307 1059.7 901 63.6
Ciclev10030699m.g Citrus clementina HOM05D005394 ORTHO05D006909 1.7e-307 1059.3 912 64.5
DCAR_009812 Daucus carota HOM05D005394 ORTHO05D006909 1.7e-307 1059.3 904 64.7
Haze_13523 Corylus avellana HOM05D005394 ORTHO05D006909 3.1e-306 1055.0 944 62.6
FAN14G2062 Fragaria x ananassa HOM05D005394 ORTHO05D006909 1.2e-305 1053.1 900 63.0
ClCG02G018460 Citrullus lanatus HOM05D005394 ORTHO05D006909 2.0e-305 1052.4 917 62.5
FvH4_6g38530 Fragaria vesca HOM05D005394 ORTHO05D006909 3.5e-305 1051.6 900 62.9
Ca_06271_v3 Cicer arietinum L. HOM05D005394 ORTHO05D006909 4.5e-305 1051.2 908 62.9
HanXRQChr09g0276121 Helianthus annuus HOM05D005394 ORTHO05D006909 7.7e-305 1050.4 903 65.0
HanXRQChr17g0559821 Helianthus annuus HOM05D005394 ORTHO05D006909 7.7e-305 1050.4 903 65.4
Medtr5g091250 Medicago truncatula HOM05D005394 ORTHO05D006909 2.9e-304 1048.5 908 62.7
FAN02G2503 Fragaria x ananassa HOM05D005394 ORTHO05D006909 5.0e-304 1047.7 900 62.6
Sabra05G0154700 Salix brachista HOM05D005394 ORTHO05D006909 6.5e-304 1047.3 906 64.1
CsaV3_6G013780 Cucumis sativus L. HOM05D005394 ORTHO05D006909 8.5e-304 1047.0 903 64.3
MELO3C019674.2 Cucumis melo HOM05D005394 ORTHO05D006909 1.1e-303 1046.6 901 64.9
FAN05G5751 Fragaria x ananassa HOM05D005394 ORTHO05D006909 1.1e-303 1046.6 900 62.7
PSO675G3098 Papaver somniferum HOM05D005394 ORTHO05D006909 3.2e-303 1045.0 922 63.3
Sc06g0007690 Simmondsia chinensis HOM05D005394 ORTHO05D006909 4.2e-303 1044.6 895 62.6
FAN09G4660 Fragaria x ananassa HOM05D005394 ORTHO05D006909 7.2e-303 1043.9 900 62.4
Atru.BG.36.p Acer truncatum HOM05D005394 ORTHO05D006909 9.4e-303 1043.5 863 65.6
Psat0s1569g0040 Pisum sativum HOM05D005394 ORTHO05D006909 2.1e-302 1042.3 908 62.1
PSO541G2917 Papaver somniferum HOM05D005394 ORTHO05D006909 3.6e-302 1041.6 916 63.2
Lsat_1_v5_gn_8_142320 Lactuca sativa HOM05D005394 ORTHO05D006909 3.0e-301 1038.5 908 65.4
MBI16_g26174_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 4.4e-300 1034.6 902 61.5
THA.LOC104825567 Tarenaya hassleriana HOM05D005394 ORTHO05D006909 1.3e-299 1033.1 864 65.5
EL10Ac9g22847 Beta vulgaris HOM05D005394 ORTHO05D006909 2.8e-299 1031.9 867 63.7
TWI14G0801 Tripterygium wilfordii HOM05D005394 ORTHO05D006909 2.8e-299 1031.9 896 63.3
Gorai.011G139100 Gossypium raimondii HOM05D005394 ORTHO05D006909 4.8e-299 1031.2 896 64.8
Potri.005G203900 Populus trichocarpa HOM05D005394 ORTHO05D006909 1.4e-298 1029.6 906 63.1
QL08p044839 Quercus lobata HOM05D005394 ORTHO05D006909 7.0e-298 1027.3 908 63.4
Lalb_Chr17g0348211 Lupinus albus HOM05D005394 ORTHO05D006909 9.1e-298 1026.9 894 62.8
Gohir.D10G126100 Gossypium hirsutum HOM05D005394 ORTHO05D006909 4.5e-297 1024.6 903 64.5
Gohir.A10G140600 Gossypium hirsutum HOM05D005394 ORTHO05D006909 1.3e-296 1023.1 896 64.6
Sed0020842 Sechium edule HOM05D005394 ORTHO05D006909 1.7e-296 1022.7 898 62.5
CSS0015023 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 2.3e-296 1022.3 914 64.4
COL.COLO4_10088 Corchorus olitorius HOM05D005394 ORTHO05D006909 2.9e-296 1021.9 897 64.4
CSS0042292 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 3.8e-296 1021.5 914 64.3
Thecc.04G175300 Theobroma cacao HOM05D005394 ORTHO05D006909 5.0e-296 1021.1 913 62.9
PGR042G0197 Punica granatum HOM05D005394 ORTHO05D006909 2.5e-295 1018.8 910 63.7
Manes.01G130300 Manihot esculenta HOM05D005394 ORTHO05D006909 3.3e-295 1018.5 906 64.2
MD17G1137000 Malus domestica HOM05D005394 ORTHO05D006909 7.2e-295 1017.3 831 65.7
Sed0013102 Sechium edule HOM05D005394 ORTHO05D006909 2.1e-294 1015.8 903 63.0
CANSAT64G3008 Cannabis sativa HOM05D005394 ORTHO05D006909 1.4e-293 1013.1 905 61.8
Cfa023066 Carpinus fangiana HOM05D005394 ORTHO05D006909 1.5e-292 1009.6 907 62.2
Phvul.008G193314 Phaseolus vulgaris HOM05D005394 ORTHO05D006909 2.2e-291 1005.7 914 61.2
VMungo0647G2040 Vigna mungo HOM05D005394 ORTHO05D006909 8.3e-291 1003.8 909 60.8
Glyma.14G029500 Glycine max HOM05D005394 ORTHO05D006909 4.1e-290 1001.5 912 61.0
Manes.02G088100 Manihot esculenta HOM05D005394 ORTHO05D006909 2.0e-289 999.2 903 62.8
Ah.01g001930 Amaranthus hybridus HOM05D005394 ORTHO05D006909 4.5e-289 998.0 908 61.0
Aa31sc829G10 Aethionema arabicum HOM05D005394 ORTHO05D006909 5.0e-288 994.6 906 61.3
CDE02G3161 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 6.6e-288 994.2 904 60.5
LjContig00049g0014840 Lotus japonicus HOM05D005394 ORTHO05D006909 3.0e-285 985.3 908 60.4
Sp5g22930 Schrenkiella parvula HOM05D005394 ORTHO05D006909 1.5e-284 983.0 901 61.3
CiPaw.03G191600 Carya illinoinensis HOM05D005394 ORTHO05D006909 7.5e-284 980.7 906 61.7
Duzib212G0967 Durio zibethinus HOM05D005394 ORTHO05D006909 4.1e-282 974.9 896 62.8
A07p34470 Brassica napus HOM05D005394 ORTHO05D006909 7.0e-282 974.2 908 60.8
BcaC08g46216 Brassica carinata HOM05D005394 ORTHO05D006909 1.6e-281 973.0 907 60.7
Potri.002G058300 Populus trichocarpa HOM05D005394 ORTHO05D006909 2.0e-281 972.6 899 60.7
C06p42040 Brassica napus HOM05D005394 ORTHO05D006909 3.5e-281 971.8 902 60.5
Glyma.02G286300 Glycine max HOM05D005394 ORTHO05D006909 6.0e-281 971.1 909 59.6
AL2G26730 Arabidopsis lyrata HOM05D005394 ORTHO05D006909 1.0e-280 970.3 900 60.4
BolC6t39222H Brassica oleracea HOM05D005394 ORTHO05D006909 3.0e-280 968.8 901 60.5
BolC6t38908H Brassica oleracea HOM05D005394 ORTHO05D006909 7.3e-279 964.1 899 61.0
BcaC08g46016 Brassica carinata HOM05D005394 ORTHO05D006909 1.2e-276 956.8 899 60.4
C06p38110 Brassica napus HOM05D005394 ORTHO05D006909 1.2e-276 956.8 899 60.4
CARHR060570 Cardamine hirsuta HOM05D005394 ORTHO05D006909 1.2e-276 956.8 910 59.1
Carub.0002s1442 Capsella rubella HOM05D005394 ORTHO05D006909 2.0e-276 956.1 901 59.9
AT1G67930 Arabidopsis thaliana HOM05D005394 ORTHO05D006909 8.3e-275 950.7 901 59.5
Sabra02G0047500 Salix brachista HOM05D005394 ORTHO05D006909 2.1e-273 946.0 904 59.0
BcaB03g15386 Brassica carinata HOM05D005394 ORTHO05D006909 2.3e-272 942.6 832 62.1
BraA07t31074Z Brassica rapa HOM05D005394 ORTHO05D006909 2.6e-268 929.1 806 62.8
HPP92_002195 Vanilla planifolia HOM05D005394 ORTHO05D006909 2.6e-268 929.1 903 56.4
AUR62015139 Chenopodium quinoa HOM05D005394 ORTHO05D006909 9.9e-268 927.2 724 67.7
Eucgr.A02013 Eucalyptus grandis HOM05D005394 ORTHO05D006909 1.6e-265 919.8 741 65.3
AUR62017599 Chenopodium quinoa HOM05D005394 ORTHO05D006909 3.5e-265 918.7 724 67.3
ECA233G4606 Erigeron canadensis HOM05D005394 ORTHO05D006909 3.0e-264 915.6 834 62.8
ATR0605G001 Amborella trichopoda HOM05D005394 ORTHO05D006909 4.3e-263 911.8 903 57.0
SEGI_12117 Sequoiadendron giganteum HOM05D005394 ORTHO05D006909 9.5e-263 910.6 899 54.7
SHI02103 Sapria himalayana HOM05D005394 ORTHO05D006909 3.4e-260 902.1 901 54.7
Lj1A601G23 Lonicera japonica HOM05D005394 ORTHO05D006909 7.6e-260 901.0 670 70.6
vmacro00998 Vaccinium macrocarpon HOM05D005394 ORTHO05D006909 6.0e-257 891.3 1021 54.8
BcaB03g15148 Brassica carinata HOM05D005394 ORTHO05D006909 8.7e-256 887.5 741 62.6
Mapoly0082s0010 Marchantia polymorpha HOM05D005394 ORTHO05D006909 1.2e-252 877.1 869 53.0
CAN.G2018.3 Capsicum annuum HOM05D005394 ORTHO05D006909 1.5e-252 876.7 644 71.1
Zm00001eb286850 Zea mays HOM05D005394 ORTHO05D006909 3.5e-249 865.5 902 56.2
Thhalv10018283m.g Eutrema salsugineum HOM05D005394 ORTHO05D006909 1.5e-244 850.1 696 63.6
Pp3c14_13420 Physcomitrium patens HOM05D005394 ORTHO05D006909 2.3e-240 836.3 859 51.8
Pp3c10_16550 Physcomitrium patens HOM05D005394 ORTHO05D006909 1.5e-239 833.6 859 51.9
SMO266G0070 Selaginella moellendorffii HOM05D005394 ORTHO05D006909 4.8e-230 802.0 863 50.3
CBR_g53704 Chara braunii HOM05D005394 ORTHO05D006909 1.7e-219 766.9 868 48.3
Actinidia25071 Actinidia chinensis HOM05D005394 ORTHO05D006909 8.2e-206 721.5 930 50.2
Rhsim12G0008000 Rhododendron simsii HOM05D005394 ORTHO05D006909 1.4e-205 720.7 898 52.3
Cpa.g.sc2.203 Carica papaya HOM05D005394 ORTHO05D006909 1.3e-195 687.6 426 81.2
Oeu033979.1 Olea europaea HOM05D005394 ORTHO05D006909 7.3e-170 602.1 470 69.4
Actinidia12539 Actinidia chinensis HOM05D005394 ORTHO05D006909 3.9e-155 553.1 445 67.2
CDE09G0652 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 4.8e-121 439.9 305 70.2
MBI10_g36389_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 1.9e-117 427.9 279 75.6
Cre17.g721900 Chlamydomonas reinhardtii HOM05D005394 ORTHO05D006909 1.1e-114 418.7 832 33.4
Atru.chr6.2063 Acer truncatum HOM05D005394 ORTHO05D006909 9.0e-112 409.1 393 58.0
PRCOL_00001583 Prasinoderma coloniale HOM05D005394 ORTHO05D006909 1.4e-109 401.7 862 31.7
MBI10_g36386_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 5.5e-101 373.2 360 55.3
Cpa.g.sc2.200 Carica papaya HOM05D005394 ORTHO05D006909 3.1e-96 357.5 381 59.3
MCO08G047 Micromonas commoda HOM05D005394 ORTHO05D006909 1.0e-91 342.4 906 29.4
Actinidia12538 Actinidia chinensis HOM05D005394 ORTHO05D006909 9.1e-80 302.8 294 58.2
CSS0027861 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.7e-62 245.4 382 44.5
DCAR_032393 Daucus carota HOM05D005394 ORTHO05D011132 3.9e-54 217.6 140 75.7
Haze_13526 Corylus avellana HOM05D005394 ORTHO05D006909 2.0e-50 205.3 226 54.4
HanXRQChr14g0428721 Helianthus annuus HOM05D005394 ORTHO05D006909 4.6e-47 194.1 127 76.4
BcaB01g03482 Brassica carinata HOM05D005394 ORTHO05D006909 2.6e-42 178.3 131 66.4
CSS0006481 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.0e-38 166.4 141 66.0
unitig_748.g8066 Utricularia gibba HOM05D005394 ORTHO05D006909 2.8e-36 158.3 121 72.7
CSS0047075 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.8e-35 155.6 149 55.0
CSS0003150 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 2.3e-35 155.2 149 55.7
CSS0027532 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 2.0e-26 125.6 150 50.7
BcaB01g03481 Brassica carinata HOM05D005394 ORTHO05D006909 8.7e-14 83.6 71 63.4
unitig_37.g12849 Utricularia gibba HOM05D005394 ORTHO05D418089 2.1e-12 79.0 83 60.2
Actinidia12535 Actinidia chinensis HOM05D005394 ORTHO05D055987 2.6e-10 72.0 77 50.6


User provided reference genes

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