Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G02103 Striga asiatica HOM05D005491 ORTHO05D006973 7.9e-191 670.2 330 100.0
Migut.D00894 Erythranthe guttata HOM05D005491 ORTHO05D006973 6.0e-138 494.6 329 75.4
SalBow7G0632 Salvia bowleyana HOM05D005491 ORTHO05D006973 1.1e-120 437.2 329 69.6
Dinv20356 Davidia involucrata HOM05D005491 ORTHO05D006973 4.9e-116 421.8 328 65.2
CSS0040638 Camellia sinensis var. sinensis HOM05D005491 ORTHO05D006973 9.0e-110 401.0 329 62.6
vmacro17061 Vaccinium macrocarpon HOM05D005491 ORTHO05D006973 1.9e-104 383.3 330 59.1
Nitab4.5_0002885g0050 Nicotiana tabacum HOM05D005491 ORTHO05D006973 2.5e-104 382.9 316 61.1
Nitab4.5_0001691g0110 Nicotiana tabacum HOM05D005491 ORTHO05D006973 4.8e-103 378.6 316 60.8
GSVIVG01016137001 Vitis vinifera HOM05D005491 ORTHO05D006973 6.9e-102 374.8 326 59.2
Rhsim12G0214300 Rhododendron simsii HOM05D005491 ORTHO05D006973 3.4e-101 372.5 332 58.4
Thecc.06G064400 Theobroma cacao HOM05D005491 ORTHO05D006973 3.4e-101 372.5 274 66.8
Duzib192G0032 Durio zibethinus HOM05D005491 ORTHO05D006973 4.5e-101 372.1 317 61.2
Eucgr.F04012 Eucalyptus grandis HOM05D005491 ORTHO05D006973 2.2e-100 369.8 325 58.8
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 2.5e-99 366.3 291 61.9
Oeu023761.1 Olea europaea HOM05D005491 ORTHO05D006973 3.2e-99 365.9 242 72.7
Cc04_g00370 Coffea canephora HOM05D005491 ORTHO05D006973 7.1e-99 364.8 338 59.5
Gorai.009G118600 Gossypium raimondii HOM05D005491 ORTHO05D006973 2.1e-98 363.2 273 65.2
Sc15g0000930 Simmondsia chinensis HOM05D005491 ORTHO05D006973 6.0e-98 361.7 319 59.2
Gohir.D05G114500 Gossypium hirsutum HOM05D005491 ORTHO05D006973 1.0e-97 360.9 282 64.2
Lj6C21T3 Lonicera japonica HOM05D005491 ORTHO05D006973 1.8e-97 360.1 326 58.3
Nn2g12576 Nelumbo nucifera HOM05D005491 ORTHO05D006973 1.8e-97 360.1 334 55.7
Ah.15g094670 Amaranthus hybridus HOM05D005491 ORTHO05D006973 5.1e-97 358.6 274 62.8
CAN.G790.23 Capsicum annuum HOM05D005491 ORTHO05D006973 5.1e-97 358.6 324 59.0
Potri.010G250200 Populus trichocarpa HOM05D005491 ORTHO05D006973 5.1e-97 358.6 311 58.8
PGR102G1295 Punica granatum HOM05D005491 ORTHO05D006973 5.1e-97 358.6 318 60.1
RcHm_v2.0_Chr2g0150111 Rosa chinensis HOM05D005491 ORTHO05D006973 5.1e-97 358.6 275 62.5
MD09G1158800 Malus domestica HOM05D005491 ORTHO05D006973 6.7e-97 358.2 309 59.2
Manes.16G045400 Manihot esculenta HOM05D005491 ORTHO05D006973 6.7e-97 358.2 301 62.1
Peaxi162Scf00038g02533 Petunia axillaris HOM05D005491 ORTHO05D006973 8.7e-97 357.8 312 60.3
TAR383G0879 Trochodendron aralioides HOM05D005491 ORTHO05D006973 2.5e-96 356.3 253 68.4
Carub.0003s2116 Capsella rubella HOM05D005491 ORTHO05D006973 1.3e-95 354.0 319 57.4
PGSC0003DMG400009162 Solanum tuberosum HOM05D005491 ORTHO05D006973 1.6e-95 353.6 273 64.5
CARHR097080 Cardamine hirsuta HOM05D005491 ORTHO05D006973 2.8e-95 352.8 319 58.0
Ciclev10026115m.g Citrus clementina HOM05D005491 ORTHO05D006973 2.8e-95 352.8 307 58.3
AL3G35200 Arabidopsis lyrata HOM05D005491 ORTHO05D006973 8.2e-95 351.3 315 57.8
MELO3C006296.2 Cucumis melo HOM05D005491 ORTHO05D006973 1.1e-94 350.9 273 62.6
FvH4_6g37280 Fragaria vesca HOM05D005491 ORTHO05D006973 1.4e-94 350.5 276 62.0
Hund18611 Selenicereus undatus HOM05D005491 ORTHO05D006973 2.4e-94 349.7 300 57.7
CsaV3_3G010780 Cucumis sativus L. HOM05D005491 ORTHO05D006973 3.1e-94 349.4 273 61.9
BraA01t03481Z Brassica rapa HOM05D005491 ORTHO05D006973 6.9e-94 348.2 314 57.6
AT3G21200 Arabidopsis thaliana HOM05D005491 ORTHO05D006973 1.2e-93 347.4 315 57.1
BcaC09g49056 Brassica carinata HOM05D005491 ORTHO05D006973 1.2e-93 347.4 315 57.8
A05p27490 Brassica napus HOM05D005491 ORTHO05D006973 1.2e-93 347.4 289 60.2
Lsat_1_v5_gn_4_88641 Lactuca sativa HOM05D005491 ORTHO05D006973 1.2e-93 347.4 329 55.3
A01p33690 Brassica napus HOM05D005491 ORTHO05D006973 1.5e-93 347.1 325 56.3
C01p43060 Brassica napus HOM05D005491 ORTHO05D006973 2.0e-93 346.7 315 57.8
BolC1t04253H Brassica oleracea HOM05D005491 ORTHO05D006973 2.0e-93 346.7 315 57.8
CANSAT01G1753 Cannabis sativa HOM05D005491 ORTHO05D006973 2.6e-93 346.3 300 57.3
Sed0002659 Sechium edule HOM05D005491 ORTHO05D006973 3.4e-93 345.9 275 61.5
AUR62025582 Chenopodium quinoa HOM05D005491 ORTHO05D006973 4.5e-93 345.5 277 60.6
BraA05t21640Z Brassica rapa HOM05D005491 ORTHO05D006973 1.0e-92 344.4 277 62.1
Sp3g19180 Schrenkiella parvula HOM05D005491 ORTHO05D006973 1.3e-92 344.0 312 57.1
Sed0027406 Sechium edule HOM05D005491 ORTHO05D006973 1.7e-92 343.6 275 61.1
Atru.chr1.2698 Acer truncatum HOM05D005491 ORTHO05D006973 2.2e-92 343.2 332 54.5
Aa31LG8G7890 Aethionema arabicum HOM05D005491 ORTHO05D006973 2.2e-92 343.2 288 59.7
FAN02G3895 Fragaria x ananassa HOM05D005491 ORTHO05D006973 2.2e-92 343.2 288 60.1
BcaC05g28263 Brassica carinata HOM05D005491 ORTHO05D006973 2.9e-92 342.8 298 58.1
C05p42580 Brassica napus HOM05D005491 ORTHO05D006973 2.9e-92 342.8 298 58.1
MBI14_g30702_MAGBIO Magnolia biondii HOM05D005491 ORTHO05D006973 2.9e-92 342.8 405 48.1
BolC5t32978H Brassica oleracea HOM05D005491 ORTHO05D006973 1.4e-91 340.5 298 57.7
Thhalv10021146m.g Eutrema salsugineum HOM05D005491 ORTHO05D006973 1.6e-90 337.0 319 55.2
Thhalv10021148m.g Eutrema salsugineum HOM05D005491 ORTHO05D006973 1.6e-90 337.0 319 55.2
CiPaw.02G049600 Carya illinoinensis HOM05D005491 ORTHO05D006973 2.7e-90 336.3 318 57.2
BcaB06g26202 Brassica carinata HOM05D005491 ORTHO05D006973 7.9e-90 334.7 302 57.6
EL10Ac7g18224 Beta vulgaris HOM05D005491 ORTHO05D006973 1.3e-89 334.0 347 52.4
ClCG05G003150 Citrullus lanatus HOM05D005491 ORTHO05D006973 1.3e-89 334.0 323 53.3
FAN09G1743 Fragaria x ananassa HOM05D005491 ORTHO05D006973 1.8e-89 333.6 288 58.3
FAN14G5581 Fragaria x ananassa HOM05D005491 ORTHO05D005725 3.0e-89 332.8 288 58.7
PSO063G4509 Papaver somniferum HOM05D005491 ORTHO05D006973 1.9e-88 330.1 338 52.4
Lj6A3G42 Lonicera japonica HOM05D005491 ORTHO05D006973 2.5e-88 329.7 326 54.0
Lj3g0002967 Lotus japonicus HOM05D005491 ORTHO05D006973 5.7e-88 328.6 316 55.1
THA.LOC104817926 Tarenaya hassleriana HOM05D005491 ORTHO05D006973 5.7e-88 328.6 278 61.2
CDE02G1684 Ceratophyllum demersum HOM05D005491 ORTHO05D006973 7.4e-88 328.2 329 52.3
DCAR_007669 Daucus carota HOM05D005491 ORTHO05D006973 9.7e-88 327.8 318 53.1
Sopen03g041620 Solanum pennellii HOM05D005491 ORTHO05D006973 6.3e-87 325.1 257 63.4
arahy.Tifrunner.gnm1.ann1.5V72PU Arachis hypogaea HOM05D005491 ORTHO05D006973 1.1e-86 324.3 319 54.2
PSO782G2961 Papaver somniferum HOM05D005491 ORTHO05D006973 1.4e-86 323.9 337 51.9
BcaB04g20605 Brassica carinata HOM05D005491 ORTHO05D006973 6.9e-86 321.6 282 58.9
Solyc03g123880.3 Solanum lycopersicum HOM05D005491 ORTHO05D006973 9.0e-86 321.2 253 63.2
Lalb_Chr04g0264721 Lupinus albus HOM05D005491 ORTHO05D006973 2.6e-85 319.7 276 57.2
arahy.Tifrunner.gnm1.ann1.PDFG4L Arachis hypogaea HOM05D005491 ORTHO05D006973 7.7e-85 318.2 319 53.3
Glyma.08G222600 Glycine max HOM05D005491 ORTHO05D006973 1.0e-84 317.8 295 56.9
BcaNung05297 Brassica carinata HOM05D005491 ORTHO05D006973 3.8e-84 315.8 282 57.4
VMungo0647G0411 Vigna mungo HOM05D005491 ORTHO05D006973 5.0e-84 315.5 291 55.0
TPR.G38706 Trifolium pratense HOM05D005491 ORTHO05D006973 4.2e-83 312.4 315 51.1
Psat7g263520 Pisum sativum HOM05D005491 ORTHO05D006973 7.2e-83 311.6 285 55.4
Actinidia31136 Actinidia chinensis HOM05D005491 ORTHO05D006973 2.1e-82 310.1 337 51.0
Ca_20955_v3 Cicer arietinum L. HOM05D005491 ORTHO05D006973 2.7e-82 309.7 298 52.0
Aqoxy7G03200 Aquilegia oxysepala HOM05D005491 ORTHO05D006973 3.0e-81 306.2 326 52.1
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 5.1e-81 305.4 223 64.6
TWI18G1464 Tripterygium wilfordii HOM05D005491 ORTHO05D006973 8.8e-81 304.7 255 61.2
Gohir.A05G114100 Gossypium hirsutum HOM05D005491 ORTHO05D006973 1.1e-80 304.3 273 57.9
CDE05G1859 Ceratophyllum demersum HOM05D005491 ORTHO05D006973 1.5e-80 303.9 242 59.5
Medtr4g006200 Medicago truncatula HOM05D005491 ORTHO05D006973 1.5e-80 303.9 314 50.3
Phvul.008G255600 Phaseolus vulgaris HOM05D005491 ORTHO05D006973 2.0e-80 303.5 324 49.7
Sabra10G0194700 Salix brachista HOM05D005491 ORTHO05D006973 3.3e-80 302.8 413 43.6
HanXRQChr09g0277401 Helianthus annuus HOM05D005491 ORTHO05D006973 3.1e-78 296.2 313 54.6
Zm00001eb319280 Zea mays HOM05D005491 ORTHO05D006973 2.3e-73 280.0 258 54.3
ATR0580G202 Amborella trichopoda HOM05D005491 ORTHO05D006973 1.1e-72 277.7 244 57.0
SGA_v2.0_scaffold68G22804 Striga asiatica HOM05D005491 ORTHO05D006973 1.1e-67 261.2 201 66.2
COL.COLO4_31205 Corchorus olitorius HOM05D005491 ORTHO05D006973 2.5e-67 260.0 247 56.7
HPP92_013427 Vanilla planifolia HOM05D005491 ORTHO05D006973 2.0e-61 240.4 275 48.0
Zm00001eb170870 Zea mays HOM05D005491 ORTHO05D006973 2.9e-60 236.5 318 45.3
MSTRG.4527 Avicennia marina HOM05D005491 ORTHO05D006973 1.9e-59 233.8 130 84.6
Actinidia00637 Actinidia chinensis HOM05D005491 ORTHO05D006973 1.4e-57 227.6 271 47.6
ECA232G0321 Erigeron canadensis HOM05D005491 ORTHO05D006973 1.4e-57 227.6 264 47.0
Haze_10760 Corylus avellana HOM05D005491 ORTHO05D006973 8.8e-57 224.9 160 66.9
Pp3c7_5080 Physcomitrium patens HOM05D005491 ORTHO05D006973 4.8e-55 219.2 243 47.3
AagrBONN_evm.TU.Sc2ySwM_368.2001 Anthoceros agrestis HOM05D005491 ORTHO05D006973 8.3e-55 218.4 242 47.1
Mapoly0005s0279 Marchantia polymorpha HOM05D005491 ORTHO05D006973 7.2e-51 205.3 244 43.9
Cfa005563 Carpinus fangiana HOM05D005491 ORTHO05D006973 3.6e-34 149.8 167 53.9
Prupe.3G167000 Prunus persica HOM05D005491 ORTHO05D006973 3.1e-33 146.7 150 56.0
Haze_10765 Corylus avellana HOM05D005491 ORTHO05D006973 1.5e-32 144.4 144 56.2
Cpa.g.c38087 Carica papaya HOM05D005491 ORTHO05D006973 6.4e-31 139.0 114 64.0
arahy.Tifrunner.gnm1.ann1.S1MR2L Arachis hypogaea HOM05D005491 ORTHO05D006973 3.0e-28 130.2 90 65.6
Potri.008G008801 Populus trichocarpa HOM05D005491 ORTHO05D006973 1.9e-27 127.5 118 58.5
SMO146G0309 Selaginella moellendorffii HOM05D005491 ORTHO05D006973 7.3e-27 125.6 144 42.4
Glyma.14G098400 Glycine max HOM05D005491 ORTHO05D006973 2.8e-26 123.6 106 50.9
MD17G1145100 Malus domestica HOM05D005491 ORTHO05D006973 2.6e-24 117.1 132 47.0
MCO13G019 Micromonas commoda HOM05D005491 ORTHO05D006973 1.1e-22 111.7 262 30.2
Pp3c11_26760 Physcomitrium patens HOM05D005491 ORTHO05D006973 1.1e-22 111.7 146 43.2
Haze_10762 Corylus avellana HOM05D005491 ORTHO05D006973 4.6e-21 106.3 142 47.2
RcHm_v2.0_Chr3g0481151 Rosa chinensis HOM05D000090 ORTHO05D000083 1.0e-20 105.1 75 61.3
SEGI_08052 Sequoiadendron giganteum HOM05D005491 ORTHO05D006973 3.9e-20 103.2 106 47.2
Medtr3g006055 Medicago truncatula HOM05D005491 ORTHO05D006973 5.1e-20 102.8 169 36.1
Cpa.g.c36201.2 Carica papaya HOM05D005491 ORTHO05D006973 5.6e-19 99.4 74 63.5
Cre03.g156600 Chlamydomonas reinhardtii HOM05D005491 ORTHO05D006973 4.7e-18 96.3 245 28.6
Medtr4g005800 Medicago truncatula HOM05D005491 ORTHO05D006973 8.9e-17 92.0 107 41.1
Gorai.002G157400 Gossypium raimondii HOM05D005491 ORTHO05D006973 1.7e-15 87.8 65 69.2
Gohir.D01G126833 Gossypium hirsutum HOM05D005491 ORTHO05D006973 2.2e-15 87.4 65 67.7
Gohir.D06G077900 Gossypium hirsutum HOM05D005491 ORTHO05D006973 2.2e-15 87.4 65 69.2
PRCOL_00005430 Prasinoderma coloniale HOM05D005491 ORTHO05D006973 6.4e-15 85.9 234 30.3
Gorai.003G079200 Gossypium raimondii HOM05D005491 ORTHO05D006973 3.2e-14 83.6 65 64.6
SEGI_00240 Sequoiadendron giganteum HOM05D005491 ORTHO05D006973 4.1e-14 83.2 118 43.2
Gorai.013G054800 Gossypium raimondii HOM05D005491 ORTHO05D006973 2.1e-13 80.9 65 63.1
Nn6g35127 Nelumbo nucifera HOM05D005491 ORTHO05D006973 1.3e-12 78.2 117 45.3
Gorai.012G122800 Gossypium raimondii HOM05D005491 ORTHO05D006973 1.7e-12 77.8 50 72.0
CBR_g22384 Chara braunii HOM05D005491 ORTHO05D006973 3.3e-11 73.6 189 30.2
AUR62032699 Chenopodium quinoa HOM05D006013 ORTHO05D007383 4.7e-10 69.7 244 28.7
AUR62032048 Chenopodium quinoa HOM05D006013 ORTHO05D007383 8.1e-10 68.9 260 28.1
Pp3c3_4160 Physcomitrium patens HOM05D006013 ORTHO05D007383 1.8e-09 67.8 245 28.6
Aqoxy2G00451 Aquilegia oxysepala HOM05D006013 ORTHO05D007383 8.9e-09 65.5 326 27.3
TWI60G0250 Tripterygium wilfordii HOM05D006013 ORTHO05D007383 2.0e-08 64.3 318 26.1
EL10Ac3g06825 Beta vulgaris HOM05D006013 ORTHO05D007383 3.4e-08 63.5 243 27.6
Cre02.g098250 Chlamydomonas reinhardtii HOM05D006013 ORTHO05D007383 3.4e-08 63.5 258 26.7
Sabra13G0051400 Salix brachista HOM05D006013 ORTHO05D007383 3.4e-08 63.5 250 27.2
TAR623G1171 Trochodendron aralioides HOM05D006013 ORTHO05D007383 5.8e-08 62.8 243 28.0
Eucgr.K01500 Eucalyptus grandis HOM05D006013 ORTHO05D007383 1.3e-07 61.6 229 26.6
CBR_g45943 Chara braunii HOM05D006013 ORTHO05D007383 2.2e-07 60.8 214 26.2
Manes.09G140900 Manihot esculenta HOM05D006013 ORTHO05D007383 2.9e-07 60.5 238 26.9
TPR.G5910 Trifolium pratense HOM05D006013 ORTHO05D007383 8.4e-07 58.9 245 25.7


User provided reference genes

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