Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G02090 Striga asiatica HOM05D002144 ORTHO05D002170 1.8e-55 219.2 126 100.0
Oeu059028.1 Olea europaea HOM05D002144 ORTHO05D002170 1.1e-28 130.2 142 62.0
Oeu008518.1 Olea europaea HOM05D002144 ORTHO05D002170 1.5e-28 129.8 141 61.0
MSTRG.9537 Avicennia marina HOM05D002144 ORTHO05D002170 1.8e-26 122.9 138 65.9
Cc04_g00930 Coffea canephora HOM05D002144 ORTHO05D002170 1.7e-24 116.3 145 57.2
Dinv37840 Davidia involucrata HOM05D002144 ORTHO05D002170 2.9e-24 115.5 129 48.1
CiPaw.01G214500 Carya illinoinensis HOM05D002144 ORTHO05D002170 4.9e-24 114.8 125 62.4
Actinidia24441 Actinidia chinensis HOM05D002144 ORTHO05D002170 1.4e-23 113.2 138 55.1
MSTRG.9534 Avicennia marina HOM05D002144 ORTHO05D002170 1.4e-23 113.2 138 58.0
Migut.D00918 Erythranthe guttata HOM05D002144 ORTHO05D002170 7.1e-23 110.9 130 63.1
MSTRG.10926 Avicennia marina HOM05D002144 ORTHO05D002170 9.3e-23 110.5 140 60.0
MD17G1150200 Malus domestica HOM05D002144 ORTHO05D002170 2.1e-22 109.4 128 55.5
Gohir.A05G138200 Gossypium hirsutum HOM05D002144 ORTHO05D002170 6.0e-22 107.8 131 46.6
Ca_04812_v3 Cicer arietinum L. HOM05D002144 ORTHO05D002170 7.8e-22 107.5 126 55.6
MD09G1176600 Malus domestica HOM05D002144 ORTHO05D002170 1.3e-21 106.7 130 55.4
GSVIVG01016701001 Vitis vinifera HOM05D002144 ORTHO05D002170 1.3e-21 106.7 130 46.9
Nn8g38544 Nelumbo nucifera HOM05D002144 ORTHO05D002170 1.7e-21 106.3 129 51.9
Lsat_1_v5_gn_4_91600 Lactuca sativa HOM05D002144 ORTHO05D002170 2.3e-21 105.9 132 53.0
Lj3g0016932 Lotus japonicus HOM05D002144 ORTHO05D002170 3.9e-21 105.1 127 61.4
Duzib192G0893 Durio zibethinus HOM05D002144 ORTHO05D002170 5.1e-21 104.8 131 53.4
Duzib235G0612 Durio zibethinus HOM05D002144 ORTHO05D002170 8.7e-21 104.0 132 49.2
Hma1.2p1_0229F.1_g096900 Hydrangea macrophylla HOM05D002144 ORTHO05D002170 1.9e-20 102.8 133 53.4
QL05p002979 Quercus lobata HOM05D002144 ORTHO05D002170 2.5e-20 102.4 132 52.3
SalBow7G2197 Salvia bowleyana HOM05D002144 ORTHO05D002170 3.3e-20 102.1 127 55.1
Gorai.009G144700 Gossypium raimondii HOM05D002144 ORTHO05D002170 5.6e-20 101.3 126 46.0
VMungo0331G1113 Vigna mungo HOM05D002144 ORTHO05D002170 5.6e-20 101.3 126 56.3
Dinv20398 Davidia involucrata HOM05D002144 ORTHO05D002170 7.3e-20 100.9 126 42.9
FvH4_6g35330 Fragaria vesca HOM05D002144 ORTHO05D002170 1.3e-19 100.1 134 44.0
FAN09G1588 Fragaria x ananassa HOM05D002144 ORTHO05D002170 1.3e-19 100.1 134 44.0
RcHm_v2.0_Chr2g0146781 Rosa chinensis HOM05D002144 ORTHO05D002170 2.8e-19 99.0 132 53.8
Ciclev10026754m.g Citrus clementina HOM05D002144 ORTHO05D002170 3.6e-19 98.6 136 50.7
Sabra01G0128200 Salix brachista HOM05D002144 ORTHO05D002170 4.8e-19 98.2 136 51.5
Migut.I01115 Erythranthe guttata HOM05D002144 ORTHO05D002170 8.1e-19 97.4 119 61.3
HanXRQChr04g0094481 Helianthus annuus HOM05D002144 ORTHO05D002170 8.1e-19 97.4 128 54.7
Actinidia21816 Actinidia chinensis HOM05D002144 ORTHO05D002170 1.1e-18 97.1 124 53.2
DCAR_016099 Daucus carota HOM05D002144 ORTHO05D002170 1.1e-18 97.1 124 58.1
Atru.chr1.4136 Acer truncatum HOM05D002144 ORTHO05D002170 2.4e-18 95.9 123 53.7
MBI19_g38000_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 2.4e-18 95.9 127 42.5
COL.COLO4_30825 Corchorus olitorius HOM05D002144 ORTHO05D002170 3.1e-18 95.5 123 53.7
PGR119G1483 Punica granatum HOM05D002144 ORTHO05D002170 3.1e-18 95.5 136 47.1
FAN14G0119 Fragaria x ananassa HOM05D002144 ORTHO05D002170 5.3e-18 94.7 126 44.4
FAN02G3229 Fragaria x ananassa HOM05D002144 ORTHO05D002170 6.9e-18 94.4 124 52.4
Hund05715 Selenicereus undatus HOM05D002144 ORTHO05D002170 6.9e-18 94.4 154 46.8
Manes.04G148800 Manihot esculenta HOM05D002144 ORTHO05D002170 9.0e-18 94.0 116 57.8
arahy.Tifrunner.gnm1.ann1.MBM2VS Arachis hypogaea HOM05D002144 ORTHO05D002170 1.5e-17 93.2 110 65.5
MBI13_g01666_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 4.4e-17 91.7 126 54.0
Ca_30856_v3 Cicer arietinum L. HOM05D002144 ORTHO05D002170 1.3e-16 90.1 102 60.8
Peaxi162Scf00207g01541 Petunia axillaris HOM05D002144 ORTHO05D002170 1.3e-16 90.1 143 50.3
TWI14G1240 Tripterygium wilfordii HOM05D002144 ORTHO05D002170 1.3e-16 90.1 136 50.7
TWI23G1155 Tripterygium wilfordii HOM05D002144 ORTHO05D002170 1.3e-16 90.1 136 39.0
Medtr8g022300 Medicago truncatula HOM05D002144 ORTHO05D002170 1.7e-16 89.7 132 52.3
Rhsim08G0242200 Rhododendron simsii HOM05D002144 ORTHO05D002170 1.7e-16 89.7 132 50.8
Solyc06g063060.3 Solanum lycopersicum HOM05D002144 ORTHO05D002170 1.7e-16 89.7 144 47.2
Sopen06g022510 Solanum pennellii HOM05D002144 ORTHO05D002170 1.7e-16 89.7 144 47.2
Phvul.010G126600 Phaseolus vulgaris HOM05D002144 ORTHO05D002170 2.9e-16 89.0 109 48.6
Potri.003G070500 Populus trichocarpa HOM05D002144 ORTHO05D002170 2.9e-16 89.0 121 52.1
PGSC0003DMG400004897 Solanum tuberosum HOM05D002144 ORTHO05D002170 3.8e-16 88.6 146 47.9
Prupe.3G035700 Prunus persica HOM05D002144 ORTHO05D002170 4.9e-16 88.2 113 51.3
Aqoxy7G00990 Aquilegia oxysepala HOM05D002144 ORTHO05D002170 8.4e-16 87.4 131 48.9
Sc15g0000660 Simmondsia chinensis HOM05D002144 ORTHO05D002170 8.4e-16 87.4 132 53.0
Cpa.g.sc25.165 Carica papaya HOM05D002144 ORTHO05D002170 2.4e-15 85.9 71 62.0
Manes.11G015300 Manihot esculenta HOM05D002144 ORTHO05D002170 2.4e-15 85.9 117 57.3
Psat4g166680 Pisum sativum HOM05D002144 ORTHO05D002170 4.2e-15 85.1 112 44.6
unitig_748.g8062 Utricularia gibba HOM05D002144 ORTHO05D002170 4.2e-15 85.1 125 43.2
Haze_16090 Corylus avellana HOM05D002144 ORTHO05D002170 5.4e-15 84.7 70 64.3
Lalb_Chr10g0101281 Lupinus albus HOM05D002144 ORTHO05D002170 9.3e-15 84.0 62 69.4
Thecc.06G126600 Theobroma cacao HOM05D002144 ORTHO05D002170 9.3e-15 84.0 116 53.4
Nitab4.5_0002716g0090 Nicotiana tabacum HOM05D002144 ORTHO05D002170 1.2e-14 83.6 149 48.3
PSO223G0023 Papaver somniferum HOM05D002144 ORTHO05D002170 1.2e-14 83.6 129 48.8
EL10Ac7g16456 Beta vulgaris HOM05D002144 ORTHO05D002170 1.6e-14 83.2 139 39.6
PSO386G0162 Papaver somniferum HOM05D002144 ORTHO05D002170 1.6e-14 83.2 129 51.9
ATR0681G069 Amborella trichopoda HOM05D002144 ORTHO05D002170 2.1e-14 82.8 130 38.5
CiPaw.02G133200 Carya illinoinensis HOM05D002144 ORTHO05D002170 2.1e-14 82.8 69 62.3
Potri.001G164800 Populus trichocarpa HOM05D002144 ORTHO05D002170 2.7e-14 82.4 107 53.3
Glyma.07G043000 Glycine max HOM05D002144 ORTHO05D002170 4.6e-14 81.6 102 60.8
ECA232G0343 Erigeron canadensis HOM05D003140 ORTHO05D003851 1.3e-13 80.1 141 48.9
Gohir.D05G140350 Gossypium hirsutum HOM05D002144 ORTHO05D002170 2.3e-13 79.3 121 41.3
Nitab4.5_0003137g0020 Nicotiana tabacum HOM05D002144 ORTHO05D002170 3.9e-13 78.6 144 46.5
PGR102G1253 Punica granatum HOM05D002144 ORTHO05D002170 3.9e-13 78.6 126 38.9
Aa31LG10G1360 Aethionema arabicum HOM05D000815 ORTHO05D000636 5.1e-13 78.2 65 60.0
Gorai.006G090200 Gossypium raimondii HOM05D002144 ORTHO05D002170 5.1e-13 78.2 117 48.7
Gohir.D09G075100 Gossypium hirsutum HOM05D002144 ORTHO05D002170 6.6e-13 77.8 118 48.3
FAN05G3077 Fragaria x ananassa HOM05D002144 ORTHO05D002170 8.7e-13 77.4 121 48.8
vmacro15066 Vaccinium macrocarpon HOM05D002144 ORTHO05D002170 8.7e-13 77.4 123 50.4
Glyma.16G011400 Glycine max HOM05D002144 ORTHO05D002170 1.5e-12 76.6 102 60.8
Thhalv10011865m.g Eutrema salsugineum HOM05D002144 ORTHO05D002170 1.9e-12 76.3 54 63.0
Gohir.A09G075400 Gossypium hirsutum HOM05D002144 ORTHO05D002170 3.3e-12 75.5 117 47.9
BcaB07g33437 Brassica carinata HOM05D002144 ORTHO05D002170 4.3e-12 75.1 131 37.4
PSO223G0021 Papaver somniferum HOM05D002144 ORTHO05D002170 4.3e-12 75.1 129 36.4
ClCG07G014400 Citrullus lanatus HOM05D002144 ORTHO05D002170 9.6e-12 73.9 126 43.7
Sp1g40510 Schrenkiella parvula HOM05D001069 ORTHO05D002170 9.6e-12 73.9 53 64.2
PSO386G0143 Papaver somniferum HOM05D002144 ORTHO05D002170 2.1e-11 72.8 129 38.0
Eucgr.J02610 Eucalyptus grandis HOM05D002144 ORTHO05D002170 3.6e-11 72.0 136 37.5
Sed0018160 Sechium edule HOM05D002144 ORTHO05D002170 4.8e-11 71.6 55 58.2
AL1G62770 Arabidopsis lyrata HOM05D002144 ORTHO05D002170 8.1e-11 70.9 55 58.2
AT1G54070 Arabidopsis thaliana HOM05D002144 ORTHO05D002170 8.1e-11 70.9 55 58.2
MELO3C024325.2 Cucumis melo HOM05D002144 ORTHO05D002170 1.1e-10 70.5 52 61.5
Sed0008740 Sechium edule HOM05D002144 ORTHO05D002170 1.4e-10 70.1 37 81.1
Ah.08g217150 Amaranthus hybridus HOM05D002144 ORTHO05D002170 1.8e-10 69.7 128 39.1
CAN.G1743.3 Capsicum annuum HOM05D002144 ORTHO05D002170 1.8e-10 69.7 110 43.6
CARHR044400 Cardamine hirsuta HOM05D002144 ORTHO05D002170 1.8e-10 69.7 53 60.4
ClCG09G001220 Citrullus lanatus HOM05D002144 ORTHO05D002170 1.8e-10 69.7 52 61.5
Sed0008928 Sechium edule HOM05D002144 ORTHO05D002170 2.4e-10 69.3 61 57.4
Carub.0001s4330 Capsella rubella HOM05D002144 ORTHO05D002170 3.1e-10 68.9 131 32.8
MELO3C022686.2 Cucumis melo HOM05D002144 ORTHO05D002170 3.1e-10 68.9 140 42.9
TPR.G16655 Trifolium pratense HOM05D002144 ORTHO05D002170 6.9e-10 67.8 118 53.4
AUR62005218 Chenopodium quinoa HOM05D002144 ORTHO05D002170 2.0e-09 66.2 82 41.5
THA.LOC104822669 Tarenaya hassleriana HOM05D002144 ORTHO05D002170 2.0e-09 66.2 129 41.1
Os09g0437500 Oryza sativa ssp. japonica HOM05D002144 ORTHO05D002170 2.6e-09 65.9 149 43.6
CsaV3_7G034150 Cucumis sativus L. HOM05D002144 ORTHO05D002170 4.5e-09 65.1 52 59.6
Zm00001eb040560 Zea mays HOM05D002144 ORTHO05D002170 4.5e-09 65.1 136 33.1
Eucgr.I02133 Eucalyptus grandis HOM05D002144 ORTHO05D002170 5.8e-09 64.7 67 53.7
A06p00580 Brassica napus HOM05D000815 ORTHO05D000636 9.9e-09 63.9 62 50.0
BraA06t23272Z Brassica rapa HOM05D000815 ORTHO05D000636 9.9e-09 63.9 62 50.0
BcaC08g44159 Brassica carinata HOM05D002144 ORTHO05D002170 2.9e-08 62.4 51 54.9
C06p15600 Brassica napus HOM05D002144 ORTHO05D002170 2.9e-08 62.4 51 54.9
BolC6t36748H Brassica oleracea HOM05D002144 ORTHO05D002170 2.9e-08 62.4 51 54.9
CANSAT56G1652 Cannabis sativa HOM05D002144 ORTHO05D002170 4.9e-08 61.6 70 51.4
BcaB02g10863 Brassica carinata HOM05D002144 ORTHO05D002170 6.4e-08 61.2 63 52.4
A05p17730 Brassica napus HOM05D002144 ORTHO05D002170 8.4e-08 60.8 36 72.2
C06p09860 Brassica napus HOM05D000815 ORTHO05D000636 8.4e-08 60.8 62 48.4
BolC6t36057H Brassica oleracea HOM05D000815 ORTHO05D000636 8.4e-08 60.8 62 48.4
BraA05t20665Z Brassica rapa HOM05D002144 ORTHO05D002170 8.4e-08 60.8 36 72.2
AUR62000749 Chenopodium quinoa HOM05D002144 ORTHO05D002170 8.4e-08 60.8 91 36.3
AUR62000750 Chenopodium quinoa HOM05D002144 ORTHO05D002170 8.4e-08 60.8 91 36.3
Hund07106 Selenicereus undatus HOM05D002144 ORTHO05D002170 8.4e-08 60.8 71 45.1
Sc09g0002900 Simmondsia chinensis HOM05D002144 ORTHO05D002170 1.4e-07 60.1 32 75.0
PGR031G3340 Punica granatum HOM05D002144 ORTHO05D002170 2.4e-07 59.3 56 51.8
Zm00001eb313950 Zea mays HOM05D002144 ORTHO05D002170 3.2e-07 58.9 57 49.1
Aa31LG8G1430 Aethionema arabicum HOM05D002144 ORTHO05D002170 4.2e-07 58.5 29 82.8
Sc16g0008780 Simmondsia chinensis HOM05D002144 ORTHO05D002170 4.2e-07 58.5 58 46.6
Ciclev10002843m.g Citrus clementina HOM05D002144 ORTHO05D002170 5.5e-07 58.2 137 31.4
Manes.09G171400 Manihot esculenta HOM05D002144 ORTHO05D002170 7.1e-07 57.8 136 30.1
Ah.04g161190 Amaranthus hybridus HOM05D002144 ORTHO05D002170 9.3e-07 57.4 49 49.0
PSO729G0021 Papaver somniferum HOM05D002144 ORTHO05D002170 9.3e-07 57.4 64 45.3
AL3G26430 Arabidopsis lyrata HOM05D002144 ORTHO05D002170 1.6e-06 56.6 29 82.8
arahy.Tifrunner.gnm1.ann1.DGZF1S Arachis hypogaea HOM05D002144 ORTHO05D002170 1.6e-06 56.6 85 36.5
arahy.Tifrunner.gnm1.ann1.TTE3SB Arachis hypogaea HOM05D002144 ORTHO05D002170 1.6e-06 56.6 85 36.5
A02p24940 Brassica napus HOM05D002144 ORTHO05D002170 1.6e-06 56.6 81 34.6
BraA02t07484Z Brassica rapa HOM05D002144 ORTHO05D002170 1.6e-06 56.6 81 34.6
Lsat_1_v5_gn_1_37700 Lactuca sativa HOM05D002144 ORTHO05D002170 1.6e-06 56.6 74 41.9
GSVIVG01031183001 Vitis vinifera HOM05D002144 ORTHO05D002170 1.6e-06 56.6 137 31.4
BcaC04g24010 Brassica carinata HOM05D002144 ORTHO05D002170 2.1e-06 56.2 61 41.0
BolC9t53152H Brassica oleracea HOM05D002144 ORTHO05D002170 2.1e-06 56.2 61 41.0
PSO724G0168 Papaver somniferum HOM05D002144 ORTHO05D002170 2.1e-06 56.2 64 43.8
Solyc01g099840.3 Solanum lycopersicum HOM05D002144 ORTHO05D002170 2.1e-06 56.2 135 29.6
Sopen00g009360 Solanum pennellii HOM05D002144 ORTHO05D002170 2.1e-06 56.2 135 29.6
Sopen01g043350 Solanum pennellii HOM05D002144 ORTHO05D002170 2.1e-06 56.2 135 29.6
CARHR002160 Cardamine hirsuta HOM05D002144 ORTHO05D002170 2.7e-06 55.8 67 38.8
MD04G1198800 Malus domestica HOM05D002144 ORTHO05D002170 2.7e-06 55.8 67 40.3
Peaxi162Scf00471g00710 Petunia axillaris HOM05D002144 ORTHO05D002170 2.7e-06 55.8 125 32.0
Sed0007798 Sechium edule HOM05D002144 ORTHO05D002170 2.7e-06 55.8 133 33.1
BraA09t35863Z Brassica rapa HOM05D002144 ORTHO05D002170 3.5e-06 55.5 61 41.0
CARHR089060 Cardamine hirsuta HOM05D002144 ORTHO05D002170 3.5e-06 55.5 25 92.0
Cc02_g34280 Coffea canephora HOM05D002144 ORTHO05D002170 3.5e-06 55.5 71 40.8
CsaV3_2G006690 Cucumis sativus L. HOM05D002144 ORTHO05D002170 3.5e-06 55.5 87 39.1
Lj5g0009461 Lotus japonicus HOM05D002144 ORTHO05D002170 3.5e-06 55.5 85 34.1
MBI18_g06040_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 3.5e-06 55.5 133 33.8
Manes.08G116600 Manihot esculenta HOM05D002144 ORTHO05D002170 3.5e-06 55.5 135 28.9
Peaxi162Scf00037g01327 Petunia axillaris HOM05D002144 ORTHO05D002170 3.5e-06 55.5 32 68.8
EL10Ac4g09903 Beta vulgaris HOM05D002144 ORTHO05D002170 4.6e-06 55.1 36 61.1
BcaC03g16170 Brassica carinata HOM05D002144 ORTHO05D002170 4.6e-06 55.1 65 40.0
C01p50450 Brassica napus HOM05D002144 ORTHO05D002170 4.6e-06 55.1 29 79.3
C02p39100 Brassica napus HOM05D002144 ORTHO05D002170 4.6e-06 55.1 65 40.0
BolC1t04997H Brassica oleracea HOM05D002144 ORTHO05D002170 4.6e-06 55.1 29 79.3
BolC2t09920H Brassica oleracea HOM05D002144 ORTHO05D002170 4.6e-06 55.1 65 40.0
CAN.G1459.22 Capsicum annuum HOM05D002144 ORTHO05D002170 4.6e-06 55.1 135 28.9
Eucgr.B01910 Eucalyptus grandis HOM05D002144 ORTHO05D002170 4.6e-06 55.1 32 68.8
QL03p019949 Quercus lobata HOM05D002144 ORTHO05D002170 4.6e-06 55.1 136 30.9
Cpa.g.sc327.9 Carica papaya HOM05D002144 ORTHO05D002170 6.0e-06 54.7 71 38.0
CDE06G1752 Ceratophyllum demersum HOM05D002144 ORTHO05D002170 6.0e-06 54.7 62 43.5
Mapoly0057s0054 Marchantia polymorpha HOM05D003630 ORTHO05D004151 6.0e-06 54.7 154 29.9
PGSC0003DMG400024720 Solanum tuberosum HOM05D002144 ORTHO05D002170 6.0e-06 54.7 135 28.9
unitig_0.g2318 Utricularia gibba HOM05D002144 ORTHO05D002170 6.0e-06 54.7 68 38.2
A09p02140 Brassica napus HOM05D002144 ORTHO05D002170 7.9e-06 54.3 61 41.0
Glyma.20G237200 Glycine max HOM05D002144 ORTHO05D002170 7.9e-06 54.3 83 36.1
Nn4g25785 Nelumbo nucifera HOM05D002144 ORTHO05D002170 7.9e-06 54.3 80 38.8
Nitab4.5_0005982g0020 Nicotiana tabacum HOM05D002144 ORTHO05D002170 7.9e-06 54.3 125 29.6
Psat3g011320 Pisum sativum HOM05D002144 ORTHO05D002170 7.9e-06 54.3 32 68.8
Hund21717 Selenicereus undatus HOM05D002144 ORTHO05D002170 7.9e-06 54.3 31 67.7
TPR.G17717 Trifolium pratense HOM05D002144 ORTHO05D002170 7.9e-06 54.3 86 36.0
TAR365G0709 Trochodendron aralioides HOM05D002144 ORTHO05D002170 7.9e-06 54.3 140 27.1


User provided reference genes

Program Settings