Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G02067 Striga asiatica HOM05D006176 ORTHO05D007346 2.1e-55 218.8 111 100.0
Cfa003523 Carpinus fangiana HOM05D006176 ORTHO05D007346 1.0e-20 103.6 91 54.9
Migut.I01087 Erythranthe guttata HOM05D006176 ORTHO05D007346 2.2e-20 102.4 118 51.7
Haze_16045 Corylus avellana HOM05D006176 ORTHO05D007346 3.8e-20 101.7 91 53.8
Ah.08g216920 Amaranthus hybridus HOM05D006176 ORTHO05D007346 6.5e-20 100.9 107 48.6
Duzib192G0929 Durio zibethinus HOM05D006176 ORTHO05D007346 1.1e-19 100.1 108 48.1
Gohir.A05G139800 Gossypium hirsutum HOM05D006176 ORTHO05D007346 5.5e-19 97.8 82 53.7
Gohir.D05G142000 Gossypium hirsutum HOM05D006176 ORTHO05D007346 2.1e-18 95.9 82 52.4
Gorai.009G146100 Gossypium raimondii HOM05D006176 ORTHO05D007346 2.1e-18 95.9 82 52.4
Thecc.06G122200 Theobroma cacao HOM05D006176 ORTHO05D007346 4.6e-18 94.7 89 51.7
COL.COLO4_30741 Corchorus olitorius HOM05D006176 ORTHO05D007346 6.0e-18 94.4 82 51.2
SGA_v2.0_scaffold122G33347 Striga asiatica HOM05D006176 ORTHO05D007346 7.9e-18 94.0 91 57.1
PGSC0003DMG400004890 Solanum tuberosum HOM05D006176 ORTHO05D007346 1.3e-17 93.2 94 51.1
EL10Ac7g16423 Beta vulgaris HOM05D006176 ORTHO05D007346 5.1e-17 91.3 95 47.4
Dinv37860 Davidia involucrata HOM05D006176 ORTHO05D007346 5.1e-17 91.3 82 59.8
Aqoxy2G03952 Aquilegia oxysepala HOM05D006176 ORTHO05D007346 6.7e-17 90.9 86 50.0
Sopen06g022380 Solanum pennellii HOM05D006176 ORTHO05D007346 8.7e-17 90.5 93 49.5
Manes.04G145900 Manihot esculenta HOM05D006176 ORTHO05D007346 1.5e-16 89.7 87 49.4
CiPaw.01G217500 Carya illinoinensis HOM05D006176 ORTHO05D007346 1.9e-16 89.4 100 47.0
Solyc06g062930.1 Solanum lycopersicum HOM05D006176 ORTHO05D007346 3.3e-16 88.6 94 47.9
Migut.D00934 Erythranthe guttata HOM05D006176 ORTHO05D007346 5.7e-16 87.8 105 49.5
Nitab4.5_0010678g0020 Nicotiana tabacum HOM05D006176 ORTHO05D007346 9.7e-16 87.0 88 47.7
Dinv20423 Davidia involucrata HOM05D006176 ORTHO05D007346 1.6e-15 86.3 87 52.9
Atru.chr1.4021 Acer truncatum HOM05D006176 ORTHO05D007346 2.8e-15 85.5 92 48.9
FvH4_6g34980 Fragaria vesca HOM05D006176 ORTHO05D007346 2.8e-15 85.5 104 43.3
FAN14G1476 Fragaria x ananassa HOM05D006176 ORTHO05D007346 2.8e-15 85.5 104 43.3
Nitab4.5_0000255g0320 Nicotiana tabacum HOM05D006176 ORTHO05D007346 2.8e-15 85.5 88 47.7
Oeu000400.1 Olea europaea HOM05D006176 ORTHO05D007346 4.8e-15 84.7 87 49.4
FAN05G0172 Fragaria x ananassa HOM05D006176 ORTHO05D007346 8.2e-15 84.0 79 49.4
FAN09G3283 Fragaria x ananassa HOM05D006176 ORTHO05D007346 8.2e-15 84.0 85 47.1
Oeu043644.1 Olea europaea HOM05D006176 ORTHO05D007346 8.2e-15 84.0 81 50.6
RcHm_v2.0_Chr2g0146001 Rosa chinensis HOM05D006176 ORTHO05D007346 1.8e-14 82.8 104 41.3
Glyma.07G040000 Glycine max HOM05D006176 ORTHO05D007346 2.4e-14 82.4 86 48.8
TAR624G0214 Trochodendron aralioides HOM05D006176 ORTHO05D007346 2.4e-14 82.4 82 51.2
Actinidia26022 Actinidia chinensis HOM05D006176 ORTHO05D007346 4.1e-14 81.6 88 46.6
Sc12g0010640 Simmondsia chinensis HOM05D006176 ORTHO05D007346 5.3e-14 81.3 105 40.0
Atru.chr1.4004 Acer truncatum HOM05D006176 ORTHO05D007346 9.0e-14 80.5 92 46.7
MSTRG.10943 Avicennia marina HOM05D006176 ORTHO05D007346 1.2e-13 80.1 109 43.1
CANSAT56G3952 Cannabis sativa HOM05D006176 ORTHO05D007346 1.2e-13 80.1 82 41.5
DCAR_022691 Daucus carota HOM05D006176 ORTHO05D007346 1.2e-13 80.1 86 46.5
Rhsim12G0210400 Rhododendron simsii HOM05D006176 ORTHO05D007346 1.2e-13 80.1 90 43.3
MBI13_g35417_MAGBIO Magnolia biondii HOM05D006176 ORTHO05D007346 1.5e-13 79.7 81 42.0
Potri.003G067200 Populus trichocarpa HOM05D006176 ORTHO05D007346 1.5e-13 79.7 87 42.5
Phvul.010G128700 Phaseolus vulgaris HOM05D006176 ORTHO05D007346 2.6e-13 79.0 86 46.5
ClCG07G014560 Citrullus lanatus HOM05D006176 ORTHO05D007346 3.4e-13 78.6 111 36.9
Rhsim12G0210800 Rhododendron simsii HOM05D006176 ORTHO05D007346 3.4e-13 78.6 84 44.0
Glyma.16G008800 Glycine max HOM05D006176 ORTHO05D007346 4.5e-13 78.2 86 47.7
Lj3g0022886 Lotus japonicus HOM05D006176 ORTHO05D007346 4.5e-13 78.2 82 42.7
MBI19_g09833_MAGBIO Magnolia biondii HOM05D006176 ORTHO05D007346 4.5e-13 78.2 82 43.9
Potri.001G167600 Populus trichocarpa HOM05D006176 ORTHO05D007346 4.5e-13 78.2 88 46.6
PGR102G2654 Punica granatum HOM05D006176 ORTHO05D007346 5.9e-13 77.8 82 47.6
Ca_23393_v3 Cicer arietinum L. HOM05D006176 ORTHO05D007346 7.6e-13 77.4 81 43.2
Lsat_1_v5_gn_4_94161 Lactuca sativa HOM05D006176 ORTHO05D007346 7.6e-13 77.4 82 43.9
MD09G1180800 Malus domestica HOM05D006176 ORTHO05D007346 7.6e-13 77.4 88 43.2
Nn8g38624 Nelumbo nucifera HOM05D006176 ORTHO05D007346 7.6e-13 77.4 90 40.0
Gohir.A10G054700 Gossypium hirsutum HOM05D006176 ORTHO05D007346 1.3e-12 76.6 82 48.8
Gohir.D10G056700 Gossypium hirsutum HOM05D006176 ORTHO05D007346 1.3e-12 76.6 82 48.8
Gorai.011G060500 Gossypium raimondii HOM05D006176 ORTHO05D007346 1.3e-12 76.6 82 48.8
Peaxi162Scf00038g02015 Petunia axillaris HOM05D006176 ORTHO05D007346 2.9e-12 75.5 98 37.8
Ciclev10027265m.g Citrus clementina HOM05D006176 ORTHO05D007346 6.5e-12 74.3 72 48.6
CsaV3_3G030710 Cucumis sativus L. HOM05D006176 ORTHO05D007346 6.5e-12 74.3 87 40.2
Medtr8g021025 Medicago truncatula HOM05D006176 ORTHO05D007346 6.5e-12 74.3 81 42.0
MELO3C022667.2 Cucumis melo HOM05D006176 ORTHO05D007346 8.5e-12 73.9 87 39.1
MD17G1166900 Malus domestica HOM05D006176 ORTHO05D007346 8.5e-12 73.9 88 39.8
Prupe.3G039100 Prunus persica HOM05D006176 ORTHO05D007346 8.5e-12 73.9 80 40.0
TPR.G16753 Trifolium pratense HOM05D006176 ORTHO05D007346 8.5e-12 73.9 81 40.7
TWI75G0921 Tripterygium wilfordii HOM05D006176 ORTHO05D007346 8.5e-12 73.9 110 34.5
Sed0000884 Sechium edule HOM05D006176 ORTHO05D007346 1.4e-11 73.2 81 39.5
vmacro22033 Vaccinium macrocarpon HOM05D006176 ORTHO05D007346 1.4e-11 73.2 87 42.5
Cpa.g.c40357 Carica papaya HOM05D006176 ORTHO05D007346 2.5e-11 72.4 102 36.3
THA.LOC104810370 Tarenaya hassleriana HOM05D006176 ORTHO05D007346 4.2e-11 71.6 91 41.8
MSTRG.10944 Avicennia marina HOM05D006176 ORTHO05D007346 4.6e-10 68.2 89 46.1
Lalb_Chr04g0261121 Lupinus albus HOM05D006176 ORTHO05D007346 4.6e-10 68.2 91 44.0
PSO421G0391 Papaver somniferum HOM05D006176 ORTHO05D007346 4.6e-10 68.2 92 43.5
PSO063G0286 Papaver somniferum HOM05D006176 ORTHO05D007346 1.4e-09 66.6 89 42.7
C06p15630 Brassica napus HOM05D006176 ORTHO05D007346 3.9e-09 65.1 96 40.6
Carub.0001s4336 Capsella rubella HOM05D006176 ORTHO05D007346 3.9e-09 65.1 91 40.7
AL1G62840 Arabidopsis lyrata HOM05D006176 ORTHO05D007346 6.7e-09 64.3 91 39.6
CARHR044470 Cardamine hirsuta HOM05D006176 ORTHO05D007346 8.8e-09 63.9 91 39.6
Nitab4.5_0000189g0110 Nicotiana tabacum HOM05D006176 ORTHO05D007346 8.8e-09 63.9 80 46.2
THA.LOC104822658 Tarenaya hassleriana HOM05D006176 ORTHO05D007346 1.1e-08 63.5 91 36.3
Sopen03g041090 Solanum pennellii HOM05D006176 ORTHO05D007346 1.5e-08 63.2 108 36.1
Thhalv10011868m.g Eutrema salsugineum HOM05D006176 ORTHO05D007346 1.9e-08 62.8 91 39.6
Lsat_1_v5_gn_5_136361 Lactuca sativa HOM05D006176 ORTHO05D007346 2.5e-08 62.4 90 37.8
Sed0005659 Sechium edule HOM05D006176 ORTHO05D007346 2.5e-08 62.4 90 38.9
AT1G54120 Arabidopsis thaliana HOM05D006176 ORTHO05D007346 3.3e-08 62.0 91 38.5
Sabra03G0039100 Salix brachista HOM05D006176 ORTHO05D007346 3.3e-08 62.0 94 37.2
BcaB02g10861 Brassica carinata HOM05D006176 ORTHO05D007346 4.3e-08 61.6 88 39.8
BcaB07g33263 Brassica carinata HOM05D006176 ORTHO05D007346 4.3e-08 61.6 91 39.6
BcaC08g43592 Brassica carinata HOM05D006176 ORTHO05D007346 9.7e-08 60.5 91 39.6
C06p09900 Brassica napus HOM05D006176 ORTHO05D007346 9.7e-08 60.5 91 39.6
BolC6t36062H Brassica oleracea HOM05D006176 ORTHO05D007346 9.7e-08 60.5 91 39.6
BcaB04g17025 Brassica carinata HOM05D006176 ORTHO05D007346 1.3e-07 60.1 91 38.5
BraA06t23268Z Brassica rapa HOM05D006176 ORTHO05D007346 1.7e-07 59.7 91 38.5
A06p00540 Brassica napus HOM05D006176 ORTHO05D007346 2.2e-07 59.3 91 38.5
Carub.0003s1365 Capsella rubella HOM05D006176 ORTHO05D007346 2.2e-07 59.3 98 38.8
Sp1g40570 Schrenkiella parvula HOM05D006176 ORTHO05D007346 2.2e-07 59.3 91 36.3
AT3G14060 Arabidopsis thaliana HOM05D006176 ORTHO05D007346 2.8e-07 58.9 97 38.1
BcaC01g01436 Brassica carinata HOM05D006176 ORTHO05D007346 2.8e-07 58.9 91 37.4
C03p92010 Brassica napus HOM05D006176 ORTHO05D007346 2.8e-07 58.9 91 37.4
BolC3t21519H Brassica oleracea HOM05D006176 ORTHO05D007346 2.8e-07 58.9 91 37.4
BcaNung04891 Brassica carinata HOM05D006176 ORTHO05D007346 3.7e-07 58.5 97 37.1
A08p01210 Brassica napus HOM05D006176 ORTHO05D007346 3.7e-07 58.5 91 37.4
C01p50530 Brassica napus HOM05D006176 ORTHO05D007346 3.7e-07 58.5 97 37.1
BraA08t32172Z Brassica rapa HOM05D006176 ORTHO05D007346 3.7e-07 58.5 91 37.4
AL3G26260 Arabidopsis lyrata HOM05D006176 ORTHO05D007346 4.8e-07 58.2 97 37.1
BolC1t05004H Brassica oleracea HOM05D006176 ORTHO05D007346 4.8e-07 58.2 97 37.1
Aa31LG10G1290 Aethionema arabicum HOM05D006176 ORTHO05D007346 6.3e-07 57.8 95 36.8
Aa31LG8G1260 Aethionema arabicum HOM05D006176 ORTHO05D007346 6.3e-07 57.8 93 36.6
BolC6t36752H Brassica oleracea HOM05D006176 ORTHO05D007346 6.3e-07 57.8 82 40.2
HanXRQChr12g0360401 Helianthus annuus HOM05D006176 ORTHO05D007346 6.3e-07 57.8 65 40.0
QL05p004031 Quercus lobata HOM05D006176 ORTHO05D007346 6.3e-07 57.8 105 35.2
PGSC0003DMG400022907 Solanum tuberosum HOM05D006176 ORTHO05D007346 6.3e-07 57.8 99 32.3
ECA234G1437 Erigeron canadensis HOM05D006176 ORTHO05D007346 1.1e-06 57.0 96 36.5
A01p39590 Brassica napus HOM05D006176 ORTHO05D007346 1.4e-06 56.6 97 36.1
BraA01t03999Z Brassica rapa HOM05D006176 ORTHO05D007346 1.4e-06 56.6 97 36.1
CARHR088900 Cardamine hirsuta HOM05D006176 ORTHO05D007346 1.8e-06 56.2 93 37.6
Nitab4.5_0005192g0040 Nicotiana tabacum HOM05D006176 ORTHO05D007346 3.1e-06 55.5 87 40.2
SalBow6G3428 Salvia bowleyana HOM05D006176 ORTHO05D007346 4.1e-06 55.1 42 54.8
Sp3g12300 Schrenkiella parvula HOM05D006176 ORTHO05D007346 4.1e-06 55.1 93 36.6
Psat4g168640 Pisum sativum HOM05D006176 ORTHO05D007346 5.3e-06 54.7 52 36.5
Thhalv10021772m.g Eutrema salsugineum HOM05D006176 ORTHO05D007346 9.1e-06 53.9 93 36.6


User provided reference genes

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