Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G02044 Striga asiatica HOM05D006233 ORTHO05D007247 8.4e-76 287.0 147 100.0
MSTRG.9502 Avicennia marina HOM05D006233 ORTHO05D007247 1.5e-48 196.4 151 70.2
SGA_v2.0_scaffold68G22913 Striga asiatica HOM05D006233 ORTHO05D007247 1.7e-44 183.0 129 73.6
Migut.D00962 Erythranthe guttata HOM05D006233 ORTHO05D007247 5.5e-43 177.9 157 63.7
Sopen06g022210 Solanum pennellii HOM05D006233 ORTHO05D007247 7.0e-38 161.0 150 61.3
Solyc06g062760.3 Solanum lycopersicum HOM05D006233 ORTHO05D007247 1.6e-37 159.8 151 59.6
Cc04_g01780 Coffea canephora HOM05D006233 ORTHO05D007247 2.0e-37 159.5 150 62.0
PGSC0003DMG400004851 Solanum tuberosum HOM05D006233 ORTHO05D007247 3.5e-37 158.7 150 60.7
Nitab4.5_0005918g0010 Nicotiana tabacum HOM05D006233 ORTHO05D007247 4.5e-37 158.3 149 63.1
Nitab4.5_0000255g0250 Nicotiana tabacum HOM05D006233 ORTHO05D007247 2.9e-36 155.6 149 61.7
MD17G1173900 Malus domestica HOM05D006233 ORTHO05D007247 6.5e-36 154.5 151 60.9
MD09G1191200 Malus domestica HOM05D006233 ORTHO05D007247 8.5e-36 154.1 151 59.6
Cpa.g.sc25.68 Carica papaya HOM05D006233 ORTHO05D007247 4.2e-35 151.8 151 61.6
Prupe.3G047000 Prunus persica HOM05D006233 ORTHO05D007247 4.2e-35 151.8 149 60.4
Actinidia26050 Actinidia chinensis HOM05D006233 ORTHO05D007247 7.2e-35 151.0 150 60.0
Cfa003566 Carpinus fangiana HOM05D006233 ORTHO05D007247 1.6e-34 149.8 150 60.0
Dinv04018 Davidia involucrata HOM05D006233 ORTHO05D007247 1.6e-34 149.8 146 61.0
Lj5A43T71 Lonicera japonica HOM05D006233 ORTHO05D007247 1.6e-34 149.8 159 58.5
Dinv37902 Davidia involucrata HOM05D006233 ORTHO05D007247 6.1e-34 147.9 146 60.3
Peaxi162Scf00207g01343 Petunia axillaris HOM05D006233 ORTHO05D007247 6.1e-34 147.9 149 58.4
RcHm_v2.0_Chr2g0143671 Rosa chinensis HOM05D006233 ORTHO05D007247 1.0e-33 147.1 148 58.8
HanXRQChr10g0312401 Helianthus annuus HOM05D006233 ORTHO05D007247 2.3e-33 146.0 155 60.0
FvH4_6g33800 Fragaria vesca HOM05D006233 ORTHO05D007247 3.0e-33 145.6 150 58.7
FAN14G4045 Fragaria x ananassa HOM05D006233 ORTHO05D007247 3.0e-33 145.6 150 58.7
CANSAT56G1839 Cannabis sativa HOM05D006233 ORTHO05D007247 6.7e-33 144.4 147 57.1
FAN05G2224 Fragaria x ananassa HOM05D006233 ORTHO05D007247 6.7e-33 144.4 150 58.7
Actinidia39105 Actinidia chinensis HOM05D006233 ORTHO05D007247 8.8e-33 144.1 151 57.6
FAN09G3309 Fragaria x ananassa HOM05D006233 ORTHO05D007247 8.8e-33 144.1 150 58.0
TWI63G1789 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 8.8e-33 144.1 149 59.7
COL.COLO4_38606 Corchorus olitorius HOM05D006233 ORTHO05D007247 1.5e-32 143.3 151 58.9
AL3G26050 Arabidopsis lyrata HOM05D006233 ORTHO05D007247 2.6e-32 142.5 149 57.7
AT3G13882 Arabidopsis thaliana HOM05D006233 ORTHO05D007247 2.6e-32 142.5 149 57.7
CsaV3_3G043640 Cucumis sativus L. HOM05D006233 ORTHO05D007247 2.6e-32 142.5 149 55.7
Thecc.06G113700 Theobroma cacao HOM05D006233 ORTHO05D007247 2.6e-32 142.5 148 58.1
Aqoxy7G01184 Aquilegia oxysepala HOM05D006233 ORTHO05D007247 3.3e-32 142.1 149 57.0
Gohir.A06G191200 Gossypium hirsutum HOM05D006233 ORTHO05D007247 4.4e-32 141.7 153 60.1
Gorai.010G232600 Gossypium raimondii HOM05D006233 ORTHO05D007247 4.4e-32 141.7 152 59.2
BcaB04g18809 Brassica carinata HOM05D006233 ORTHO05D007247 5.7e-32 141.4 150 56.7
CiPaw.02G138900 Carya illinoinensis HOM05D006233 ORTHO05D007247 5.7e-32 141.4 154 56.5
Carub.0003s1344 Capsella rubella HOM05D006233 ORTHO05D007247 7.5e-32 141.0 149 55.7
Gohir.D06G199600 Gossypium hirsutum HOM05D006233 ORTHO05D007247 7.5e-32 141.0 152 58.6
A03p38490 Brassica napus HOM05D006233 ORTHO05D007247 2.8e-31 139.0 150 56.7
MELO3C013069.2 Cucumis melo HOM05D006233 ORTHO05D007247 2.8e-31 139.0 147 55.8
ECA234G2580 Erigeron canadensis HOM05D006233 ORTHO05D007247 2.8e-31 139.0 148 58.8
BcaC01g03969 Brassica carinata HOM05D006233 ORTHO05D007247 6.3e-31 137.9 151 56.3
Eucgr.F03142 Eucalyptus grandis HOM05D006233 ORTHO05D007247 6.3e-31 137.9 149 58.4
BcaB06g25428 Brassica carinata HOM05D006233 ORTHO05D007247 8.2e-31 137.5 152 55.9
BolC3t16928H Brassica oleracea HOM05D006233 ORTHO05D007247 8.2e-31 137.5 151 56.3
Haze_15979 Corylus avellana HOM05D006233 ORTHO05D007247 8.2e-31 137.5 174 51.7
Thhalv10021711m.g Eutrema salsugineum HOM05D006233 ORTHO05D007247 8.2e-31 137.5 149 56.4
CARHR088680 Cardamine hirsuta HOM05D006233 ORTHO05D007247 1.1e-30 137.1 153 56.9
CiPaw.01G223500 Carya illinoinensis HOM05D006233 ORTHO05D007247 1.4e-30 136.7 153 55.6
Atru.chr1.3781 Acer truncatum HOM05D006233 ORTHO05D007247 1.8e-30 136.3 146 58.2
arahy.Tifrunner.gnm1.ann1.LDN3BT Arachis hypogaea HOM05D006233 ORTHO05D007247 1.8e-30 136.3 145 57.2
BcaC05g29149 Brassica carinata HOM05D006233 ORTHO05D007247 2.4e-30 136.0 149 57.0
C05p53920 Brassica napus HOM05D006233 ORTHO05D007247 2.4e-30 136.0 149 57.0
Medtr8g017420 Medicago truncatula HOM05D006233 ORTHO05D007247 2.4e-30 136.0 146 58.2
PSO210G5036 Papaver somniferum HOM05D006233 ORTHO05D007247 2.4e-30 136.0 146 54.8
TWI38G0279 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 2.4e-30 136.0 151 54.3
Manes.11G024800 Manihot esculenta HOM05D006233 ORTHO05D007247 3.1e-30 135.6 152 59.2
Sp3g12110 Schrenkiella parvula HOM05D006233 ORTHO05D007247 3.1e-30 135.6 151 55.6
C03p46650 Brassica napus HOM05D006233 ORTHO05D007247 4.1e-30 135.2 151 55.0
Ca_23330_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 7.0e-30 134.4 146 55.5
Hma1.2p1_1128F.1_g259780 Hydrangea macrophylla HOM05D006233 ORTHO05D007247 7.0e-30 134.4 148 55.4
Lj5g0016703 Lotus japonicus HOM05D006233 ORTHO05D007247 7.0e-30 134.4 153 54.2
TPR.G3185 Trifolium pratense HOM05D006233 ORTHO05D007247 7.0e-30 134.4 146 57.5
PGR119G1625 Punica granatum HOM05D006233 ORTHO05D007247 1.6e-29 133.3 151 54.3
Manes.04G140700 Manihot esculenta HOM05D006233 ORTHO05D007247 2.0e-29 132.9 153 57.5
PSO210G1065 Papaver somniferum HOM05D006233 ORTHO05D007247 2.0e-29 132.9 150 53.3
Aa31LG8G1060 Aethionema arabicum HOM05D006233 ORTHO05D007247 2.7e-29 132.5 151 52.3
Sed0001061 Sechium edule HOM05D006233 ORTHO05D007247 2.7e-29 132.5 147 53.7
BraA03t13001Z Brassica rapa HOM05D006233 ORTHO05D007247 4.5e-29 131.7 151 55.6
Lj5A42T58 Lonicera japonica HOM05D006233 ORTHO05D007247 4.5e-29 131.7 88 80.7
BraA03t12999Z Brassica rapa HOM05D006233 ORTHO05D007247 5.9e-29 131.3 155 54.8
CDE03G0127 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 1.7e-28 129.8 147 53.1
Ciclev10026736m.g Citrus clementina HOM05D006233 ORTHO05D007247 3.8e-28 128.6 147 53.1
Nn6g35511 Nelumbo nucifera HOM05D006233 ORTHO05D007247 5.0e-28 128.3 147 56.5
Phvul.010G137600 Phaseolus vulgaris HOM05D006233 ORTHO05D007247 1.1e-27 127.1 147 56.5
GSVIVG01016799001 Vitis vinifera HOM05D006233 ORTHO05D007247 1.1e-27 127.1 151 55.0
Potri.003G041100 Populus trichocarpa HOM05D006233 ORTHO05D007247 3.2e-27 125.6 147 55.8
THA.LOC104822640 Tarenaya hassleriana HOM05D006233 ORTHO05D007247 5.5e-27 124.8 171 48.0
MBI04_g36913_MAGBIO Magnolia biondii HOM05D006233 ORTHO05D007247 7.2e-27 124.4 147 51.7
ClCG07G013950 Citrullus lanatus HOM05D006233 ORTHO05D007247 1.2e-26 123.6 141 51.1
Lalb_Chr25g0280771 Lupinus albus HOM05D006233 ORTHO05D007247 1.6e-26 123.2 149 53.0
VMungo0331G0931 Vigna mungo HOM05D006233 ORTHO05D007247 2.1e-26 122.9 146 55.5
Hund20828 Selenicereus undatus HOM05D006233 ORTHO05D007247 6.1e-26 121.3 171 48.0
AUR62038159 Chenopodium quinoa HOM05D006233 ORTHO05D007247 5.2e-25 118.2 160 47.5
Psat4g187760 Pisum sativum HOM05D006233 ORTHO05D007247 6.8e-25 117.9 138 53.6
AUR62009846 Chenopodium quinoa HOM05D006233 ORTHO05D007247 8.8e-25 117.5 158 48.7
HanXRQChr04g0094941 Helianthus annuus HOM05D006233 ORTHO05D007247 8.8e-25 117.5 147 55.8
Glyma.08G191600 Glycine max HOM05D006233 ORTHO05D007247 5.7e-24 114.8 143 51.7
Glyma.07G008600 Glycine max HOM05D006233 ORTHO05D007247 1.7e-23 113.2 146 52.1
EL10Ac7g16362 Beta vulgaris HOM05D006233 ORTHO05D007247 6.3e-23 111.3 160 45.0
unitig_8.g4463 Utricularia gibba HOM05D006233 ORTHO05D007247 8.3e-23 110.9 127 50.4
Actinidia32155 Actinidia chinensis HOM05D006233 ORTHO05D007247 1.8e-22 109.8 148 49.3
FAN21G3416 Fragaria x ananassa HOM05D006233 ORTHO05D007247 2.7e-21 105.9 125 49.6
BolC5t34058H Brassica oleracea HOM05D006233 ORTHO05D007247 7.7e-21 104.4 148 47.3
Os01g0571200 Oryza sativa ssp. japonica HOM05D006233 ORTHO05D007247 3.8e-20 102.1 152 44.1
arahy.Tifrunner.gnm1.ann1.9P6A99 Arachis hypogaea HOM05D006233 ORTHO05D007247 8.6e-20 100.9 123 49.6
Zm00001eb160070 Zea mays HOM05D006233 ORTHO05D007247 8.6e-20 100.9 150 46.0
Duzib192G0098 Durio zibethinus HOM05D006233 ORTHO05D007247 4.2e-19 98.6 130 50.8
Lsat_1_v5_gn_5_135041 Lactuca sativa HOM05D006233 ORTHO05D007247 5.5e-19 98.2 119 47.1
Rhsim08G0234900 Rhododendron simsii HOM05D006233 ORTHO05D007247 9.5e-19 97.4 131 44.3
ATR0789G010 Amborella trichopoda HOM05D006233 ORTHO05D007247 1.0e-17 94.0 98 55.1
A03p38520 Brassica napus HOM05D006233 ORTHO05D007247 6.8e-17 91.3 121 48.8
SalBow7G1471 Salvia bowleyana HOM05D006233 ORTHO05D007247 1.2e-16 90.5 93 55.9
FAN11G2894 Fragaria x ananassa HOM05D000283 ORTHO05D007247 2.0e-16 89.7 133 45.1
Oeu011882.1 Olea europaea HOM05D006233 ORTHO05D007247 3.4e-16 89.0 108 50.0
Nn8g38812 Nelumbo nucifera HOM05D006233 ORTHO05D007247 2.2e-15 86.3 135 44.4
BcaC05g29150 Brassica carinata HOM05D006233 ORTHO05D007247 3.5e-13 79.0 145 46.2
HPP92_007656 Vanilla planifolia HOM05D006233 ORTHO05D007247 5.9e-13 78.2 127 40.9
BraA05t22362Z Brassica rapa HOM05D006233 ORTHO05D007247 1.0e-12 77.4 172 40.7
Mapoly0016s0011 Marchantia polymorpha HOM05D006233 ORTHO05D007247 3.8e-12 75.5 124 41.1
CDE06G1672 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 1.1e-11 73.9 117 42.7
Pp3c4_29560 Physcomitrium patens HOM05D006233 ORTHO05D007247 1.9e-11 73.2 117 41.0
CSS0050466 Camellia sinensis var. sinensis HOM05D006233 ORTHO05D007247 2.5e-11 72.8 105 41.0
QL05p010144 Quercus lobata HOM05D006233 ORTHO05D007247 7.3e-11 71.2 101 48.5
Nn1g01194 Nelumbo nucifera HOM05D006233 ORTHO05D007247 3.6e-10 68.9 52 69.2
Zm00001eb357240 Zea mays HOM05D006233 ORTHO05D007247 3.6e-10 68.9 128 36.7
QL05p010226 Quercus lobata HOM05D006233 ORTHO05D007247 6.1e-10 68.2 93 47.3
AagrBONN_evm.TU.Sc2ySwM_368.223 Anthoceros agrestis HOM05D003143 ORTHO05D003628 3.1e-09 65.9 89 44.9
A05p35530 Brassica napus HOM05D006233 ORTHO05D007247 9.8e-08 60.8 99 43.4
CBR_g8600 Chara braunii HOM05D006233 ORTHO05D007247 1.7e-07 60.1 51 56.9
Ca_29232_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 1.1e-06 57.4 42 66.7
MCO16G417 Micromonas commoda HOM05D003208 ORTHO05D004103 1.9e-06 56.6 48 58.3


User provided reference genes

Program Settings