Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 8.6e-102 373.6 185 100.0
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 9.6e-77 290.4 171 78.9
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 3.6e-76 288.5 182 77.5
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 5.3e-75 284.6 170 78.8
Oeu029646.1 Olea europaea HOM05D005658 ORTHO05D006989 1.6e-71 273.1 169 75.7
CAN.G438.34 Capsicum annuum HOM05D005658 ORTHO05D006989 3.5e-71 271.9 170 73.5
Nitab4.5_0004205g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 4.6e-71 271.6 170 74.7
Solyc03g120540.3 Solanum lycopersicum HOM05D005658 ORTHO05D006989 1.3e-70 270.0 170 74.1
Sopen03g039400 Solanum pennellii HOM05D005658 ORTHO05D006989 1.8e-70 269.6 170 73.5
Migut.D01014 Erythranthe guttata HOM05D005658 ORTHO05D006989 3.0e-70 268.9 178 71.9
Nitab4.5_0001315g0030 Nicotiana tabacum HOM05D005658 ORTHO05D006989 3.0e-70 268.9 170 73.5
Cc04_g02920 Coffea canephora HOM05D005658 ORTHO05D006989 6.7e-70 267.7 170 74.1
PGSC0003DMG400002629 Solanum tuberosum HOM05D005658 ORTHO05D006989 8.7e-70 267.3 170 72.9
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 2.8e-68 262.3 173 73.4
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 8.1e-68 260.8 159 76.1
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 4.0e-67 258.5 168 72.0
Ca_20421_v3 Cicer arietinum L. HOM05D005658 ORTHO05D006989 2.0e-66 256.1 168 72.0
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 2.0e-66 256.1 170 71.2
TAR383G0711 Trochodendron aralioides HOM05D005658 ORTHO05D006989 4.5e-66 255.0 170 71.8
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 5.8e-66 254.6 172 69.8
Lalb_Chr04g0262841 Lupinus albus HOM05D005658 ORTHO05D006989 9.9e-66 253.8 169 70.4
Glyma.08G203800 Glycine max HOM05D005658 ORTHO05D006989 1.7e-65 253.1 169 73.4
Lj9A509T93 Lonicera japonica HOM05D005658 ORTHO05D006989 3.8e-65 251.9 167 73.7
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 6.4e-65 251.1 169 70.4
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 8.4e-65 250.8 169 74.0
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 8.4e-65 250.8 177 70.6
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 1.4e-64 250.0 169 70.4
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 1.4e-64 250.0 173 69.9
Manes.04G130900 Manihot esculenta HOM05D005658 ORTHO05D006989 1.4e-64 250.0 173 69.4
Glyma.07G018600 Glycine max HOM05D005658 ORTHO05D006989 1.9e-64 249.6 169 71.0
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 1.9e-64 249.6 169 72.8
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 2.4e-64 249.2 173 69.4
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 3.2e-64 248.8 173 68.2
Sabra03G0027300 Salix brachista HOM05D005658 ORTHO05D006989 9.3e-64 247.3 169 71.0
Psat7g255000 Pisum sativum HOM05D005658 ORTHO05D006989 1.6e-63 246.5 173 69.4
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 2.1e-63 246.1 173 68.8
QL05p021437 Quercus lobata HOM05D005658 ORTHO05D006989 2.1e-63 246.1 168 71.4
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 2.1e-63 246.1 169 70.4
CiPaw.01G234800 Carya illinoinensis HOM05D005658 ORTHO05D006989 4.6e-63 245.0 170 69.4
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 1.0e-62 243.8 170 70.6
PSO210G2136 Papaver somniferum HOM05D005658 ORTHO05D006989 3.0e-62 242.3 167 70.7
CSS0031663 Camellia sinensis var. sinensis HOM05D005658 ORTHO05D006989 3.9e-62 241.9 178 68.0
Thhalv10021560m.g Eutrema salsugineum HOM05D005658 ORTHO05D006989 3.9e-62 241.9 171 70.2
Actinidia08995 Actinidia chinensis HOM05D005658 ORTHO05D006989 5.1e-62 241.5 180 66.7
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 6.7e-62 241.1 167 69.5
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 6.7e-62 241.1 166 69.9
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 8.7e-62 240.7 173 67.1
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 1.5e-61 240.0 170 69.4
Sp3g14560 Schrenkiella parvula HOM05D005658 ORTHO05D006989 1.5e-61 240.0 171 67.8
Phvul.010G147800 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 1.9e-61 239.6 169 68.6
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 2.5e-61 239.2 169 68.6
CARHR091380 Cardamine hirsuta HOM05D005658 ORTHO05D006989 4.3e-61 238.4 174 68.4
Duzib235G1329 Durio zibethinus HOM05D005658 ORTHO05D006989 4.3e-61 238.4 170 67.1
Phvul.010G147700 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 4.3e-61 238.4 177 66.7
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 5.6e-61 238.0 173 67.6
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 5.6e-61 238.0 173 69.4
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 5.6e-61 238.0 166 69.9
Lsat_1_v5_gn_5_131001 Lactuca sativa HOM05D000012 ORTHO05D000804 7.4e-61 237.7 167 67.1
VMungo0331G0597 Vigna mungo HOM05D005658 ORTHO05D006989 7.4e-61 237.7 169 67.5
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 9.6e-61 237.3 173 67.6
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 9.6e-61 237.3 170 66.5
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 1.3e-60 236.9 170 68.2
BcaC09g48588 Brassica carinata HOM05D005658 ORTHO05D006989 1.6e-60 236.5 171 66.1
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 1.6e-60 236.5 170 68.2
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 1.6e-60 236.5 170 67.6
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 1.6e-60 236.5 169 70.4
AT3G16190 Arabidopsis thaliana HOM05D005658 ORTHO05D006989 2.1e-60 236.1 171 67.8
HanXRQChr10g0313501 Helianthus annuus HOM05D005658 ORTHO05D006989 2.8e-60 235.7 166 69.9
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 4.8e-60 235.0 173 65.9
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 4.8e-60 235.0 166 68.1
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 8.1e-60 234.2 170 65.3
AL3G28880 Arabidopsis lyrata HOM05D005658 ORTHO05D006989 1.4e-59 233.4 171 66.1
CsaV3_7G033450 Cucumis sativus L. HOM05D005658 ORTHO05D006989 1.4e-59 233.4 173 64.7
A05p33310 Brassica napus HOM05D005658 ORTHO05D006989 1.8e-59 233.0 172 66.3
DCAR_016205 Daucus carota HOM05D005658 ORTHO05D006989 1.8e-59 233.0 169 69.2
Aqoxy7G01547 Aquilegia oxysepala HOM05D005658 ORTHO05D006989 2.4e-59 232.6 170 66.5
ECA234G0336 Erigeron canadensis HOM05D005658 ORTHO05D006989 2.4e-59 232.6 166 68.7
FAN02G2498 Fragaria x ananassa HOM05D005658 ORTHO05D006989 2.4e-59 232.6 173 65.9
arahy.Tifrunner.gnm1.ann1.JS39C6 Arachis hypogaea HOM05D005658 ORTHO05D006989 3.1e-59 232.3 178 68.0
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 3.1e-59 232.3 170 65.9
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 3.1e-59 232.3 169 66.3
COL.COLO4_30457 Corchorus olitorius HOM05D005658 ORTHO05D006989 4.0e-59 231.9 165 67.9
Nitab4.5_0001968g0140 Nicotiana tabacum HOM05D005658 ORTHO05D006989 4.0e-59 231.9 171 70.8
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 5.3e-59 231.5 173 67.1
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 5.3e-59 231.5 170 65.9
MBI04_g04855_MAGBIO Magnolia biondii HOM05D005658 ORTHO05D006989 5.3e-59 231.5 165 68.5
C05p50310 Brassica napus HOM05D005658 ORTHO05D006989 9.0e-59 230.7 180 63.3
Sed0000814 Sechium edule HOM05D005658 ORTHO05D006989 9.0e-59 230.7 166 66.3
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 1.5e-58 229.9 170 63.5
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 1.5e-58 229.9 170 65.3
AUR62011683 Chenopodium quinoa HOM05D005658 ORTHO05D006989 2.6e-58 229.2 169 65.7
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 2.6e-58 229.2 168 66.7
ClCG09G001890 Citrullus lanatus HOM05D005658 ORTHO05D006989 3.4e-58 228.8 170 64.7
SEGI_12338 Sequoiadendron giganteum HOM05D005658 ORTHO05D006989 3.4e-58 228.8 173 62.4
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 1.0e-57 227.3 168 66.1
Haze_16346 Corylus avellana HOM05D005658 ORTHO05D006989 1.0e-57 227.3 182 63.7
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 1.0e-57 227.3 170 65.3
BraA05t22156Z Brassica rapa HOM05D005658 ORTHO05D006989 1.3e-57 226.9 180 63.9
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 2.9e-57 225.7 199 59.3
Sed0023183 Sechium edule HOM05D005658 ORTHO05D006989 6.5e-57 224.6 170 61.8
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 1.9e-56 223.0 166 64.5
AUR62016509 Chenopodium quinoa HOM05D005658 ORTHO05D006989 2.7e-55 219.2 168 63.1
Os02g0276400 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 1.0e-54 217.2 172 62.8
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 1.8e-54 216.5 173 62.4
MELO3C027085.2 Cucumis melo HOM05D005658 ORTHO05D006989 2.3e-54 216.1 170 61.8
Dinv38010 Davidia involucrata HOM05D005658 ORTHO05D006989 2.3e-54 216.1 148 70.3
Sc12g0009500 Simmondsia chinensis HOM05D005658 ORTHO05D006989 6.7e-54 214.5 157 67.5
AUR62016508 Chenopodium quinoa HOM05D005658 ORTHO05D006989 1.1e-53 213.8 186 59.1
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 1.1e-53 213.8 170 64.7
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 1.4e-51 206.8 156 65.4
Os02g0276200 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 1.4e-51 206.8 160 66.2
Carub.0003s1594 Capsella rubella HOM05D005658 ORTHO05D006989 3.1e-51 205.7 150 68.0
FAN05G4480 Fragaria x ananassa HOM05D005658 ORTHO05D006989 6.9e-51 204.5 149 67.1
COL.COLO4_18473 Corchorus olitorius HOM05D005658 ORTHO05D006989 2.9e-49 199.1 170 59.4
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 1.2e-47 193.7 146 60.3
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 3.9e-46 188.7 170 53.5
Haze_16345 Corylus avellana HOM05D003600 ORTHO05D004129 1.5e-45 186.8 120 75.0
SMO147G0229 Selaginella moellendorffii HOM05D005658 ORTHO05D006989 1.5e-45 186.8 166 57.2
TPR.G40810 Trifolium pratense HOM05D005658 ORTHO05D006989 2.5e-45 186.0 119 74.8
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 1.3e-44 183.7 170 54.1
Psat7g255080 Pisum sativum HOM05D005658 ORTHO05D006989 3.7e-44 182.2 119 72.3
Cpa.g.sc1241.2 Carica papaya HOM05D005658 ORTHO05D006989 1.1e-43 180.6 130 64.6
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 1.0e-41 174.1 170 51.2
Sed0018991 Sechium edule HOM05D005658 ORTHO05D006989 5.0e-41 171.8 130 60.8
Psat5g078240 Pisum sativum HOM05D005658 ORTHO05D006989 8.5e-41 171.0 173 52.6
Nitab4.5_0003039g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 9.4e-40 167.5 171 56.1
AUR62011684 Chenopodium quinoa HOM05D005658 ORTHO05D006989 1.2e-39 167.2 116 69.0
Glyma.08G203700 Glycine max HOM05D005658 ORTHO05D006989 1.1e-37 160.6 114 67.5
Peaxi162Scf00015g00131 Petunia axillaris HOM05D005658 ORTHO05D006989 2.0e-37 159.8 170 50.0
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 1.1e-35 154.1 169 47.9
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 1.4e-35 153.7 170 43.5
Atru.chr1.3413 Acer truncatum HOM05D005658 ORTHO05D006989 6.9e-35 151.4 93 77.4
Manes.11G037100 Manihot esculenta HOM05D005658 ORTHO05D006989 2.3e-30 136.3 175 45.7
CAN.G214.3 Capsicum annuum HOM05D005658 ORTHO05D006989 1.3e-25 120.6 118 54.2
QL02p037511 Quercus lobata HOM05D005658 ORTHO05D006989 4.0e-14 82.4 61 65.6
TPR.G1351 Trifolium pratense HOM05D005658 ORTHO05D006989 6.3e-12 75.1 58 58.6
Peaxi162Scf00021g01915 Petunia axillaris HOM05D006499 ORTHO05D007874 3.1e-11 72.8 161 32.3
TAR622G1217 Trochodendron aralioides HOM05D006499 ORTHO05D007874 5.4e-11 72.0 177 31.1
PGSC0003DMG400016411 Solanum tuberosum HOM05D006499 ORTHO05D007874 1.2e-10 70.9 161 31.7
Solyc01g007920.2 Solanum lycopersicum HOM05D006499 ORTHO05D007874 1.6e-10 70.5 164 31.7
Sopen01g003460 Solanum pennellii HOM05D006499 ORTHO05D007874 1.6e-10 70.5 161 32.3
Sopen12g022580 Solanum pennellii HOM05D005658 ORTHO05D006989 2.7e-10 69.7 176 33.0
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 1.0e-09 67.8 165 29.1
Carub.0006s2100 Capsella rubella HOM05D006499 ORTHO05D007874 1.3e-09 67.4 166 30.1
arahy.Tifrunner.gnm1.ann1.U0P7JC Arachis hypogaea HOM05D000717 ORTHO05D000555 1.7e-09 67.0 163 31.3
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 2.3e-09 66.6 166 28.9
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 2.3e-09 66.6 166 28.9
arahy.Tifrunner.gnm1.ann1.BULB93 Arachis hypogaea HOM05D006499 ORTHO05D007874 2.9e-09 66.2 163 31.3
ATR0618G206 Amborella trichopoda HOM05D006499 ORTHO05D007874 3.8e-09 65.9 178 28.1
BcaC03g18032 Brassica carinata HOM05D006499 ORTHO05D007874 5.0e-09 65.5 166 28.9
A02p41090 Brassica napus HOM05D006499 ORTHO05D007874 5.0e-09 65.5 164 28.7
BraA02t09053Z Brassica rapa HOM05D006499 ORTHO05D007874 5.0e-09 65.5 164 28.7
Manes.15G079500 Manihot esculenta HOM05D006499 ORTHO05D007874 5.0e-09 65.5 178 28.7
Nn4g24968 Nelumbo nucifera HOM05D006499 ORTHO05D007874 5.0e-09 65.5 181 30.4
Sp2g23920 Schrenkiella parvula HOM05D006499 ORTHO05D007874 5.0e-09 65.5 166 28.9
MSTRG.12232 Avicennia marina HOM05D006499 ORTHO05D007874 6.5e-09 65.1 162 29.6
AL6G34450 Arabidopsis lyrata HOM05D006499 ORTHO05D007874 8.6e-09 64.7 163 29.4
AT5G23230 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 1.1e-08 64.3 164 28.7
Glyma.09G283200 Glycine max HOM05D006499 ORTHO05D007874 1.5e-08 63.9 162 31.5
Atru.chr1.3414 Acer truncatum HOM05D005658 ORTHO05D006989 2.5e-08 63.2 52 55.8
Zm00001eb237290 Zea mays HOM05D005658 ORTHO05D006989 3.2e-08 62.8 54 55.6
Ciclev10032745m.g Citrus clementina HOM05D006499 ORTHO05D007874 4.2e-08 62.4 180 30.0
Thhalv10005281m.g Eutrema salsugineum HOM05D006499 ORTHO05D007874 4.2e-08 62.4 166 27.1
BcaB07g29862 Brassica carinata HOM05D006499 ORTHO05D007874 5.5e-08 62.0 166 27.7
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 7.2e-08 61.6 164 28.0
Potri.003G003300 Populus trichocarpa HOM05D006499 ORTHO05D007874 2.1e-07 60.1 178 28.7
AT5G23220 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 3.6e-07 59.3 174 27.6
vmacro04318 Vaccinium macrocarpon HOM05D006499 ORTHO05D007874 3.6e-07 59.3 177 26.6
AUR62032973 Chenopodium quinoa HOM05D006499 ORTHO05D007874 5.2e-06 55.5 171 27.5
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 5.2e-06 55.5 179 25.7
CARHR190310 Cardamine hirsuta HOM05D006499 ORTHO05D007874 8.8e-06 54.7 164 26.2


User provided reference genes

Program Settings