Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G01996 Striga asiatica HOM05D004642 ORTHO05D005466 0.0e+00 1082.8 722 100.0
Nitab4.5_0000671g0060 Nicotiana tabacum HOM05D004642 ORTHO05D005466 1.5e-93 348.2 657 44.1
Nitab4.5_0005851g0030 Nicotiana tabacum HOM05D004642 ORTHO05D005466 1.0e-89 335.5 681 42.6
vmacro18915 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 8.3e-84 315.8 670 34.5
Migut.D01034 Erythranthe guttata HOM05D004642 ORTHO05D005466 1.5e-80 305.1 728 45.5
Prupe.3G071700 Prunus persica HOM05D004642 ORTHO05D005466 1.6e-79 301.6 684 33.0
SalBow2G0306 Salvia bowleyana HOM05D004642 ORTHO05D005466 1.6e-79 301.6 714 41.2
Cc04_g03480 Coffea canephora HOM05D004642 ORTHO05D005466 1.2e-77 295.4 680 35.7
PGSC0003DMG400002564 Solanum tuberosum HOM05D004642 ORTHO05D005466 2.4e-75 287.7 681 42.6
Sopen03g039110 Solanum pennellii HOM05D004642 ORTHO05D005466 1.6e-71 275.0 708 41.7
Oeu033484.1 Olea europaea HOM05D004642 ORTHO05D005466 5.8e-69 266.5 497 40.8
Potri.001G179600 Populus trichocarpa HOM05D004642 ORTHO05D005466 5.8e-69 266.5 685 33.0
Rhsim08G0221000 Rhododendron simsii HOM05D004642 ORTHO05D005466 1.3e-68 265.4 658 35.4
QL05p024308 Quercus lobata HOM05D004642 ORTHO05D005466 4.9e-68 263.5 695 35.5
Solyc03g120230.3 Solanum lycopersicum HOM05D004642 ORTHO05D005466 8.4e-68 262.7 706 40.7
MD17G1195700 Malus domestica HOM05D004642 ORTHO05D005466 4.3e-64 250.4 690 31.6
SalBow2G2616 Salvia bowleyana HOM05D004642 ORTHO05D005466 9.6e-64 249.2 498 42.8
unitig_578.g16688 Utricularia gibba HOM05D004642 ORTHO05D005466 1.6e-63 248.4 733 33.6
Actinidia24760 Actinidia chinensis HOM05D004642 ORTHO05D005466 2.8e-63 247.7 504 38.5
Gohir.A05G129515 Gossypium hirsutum HOM05D004642 ORTHO05D005466 2.4e-62 244.6 512 36.7
Hma1.2p1_0323F.1_g125210 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 2.0e-61 241.5 693 45.0
Haze_16437 Corylus avellana HOM05D004642 ORTHO05D005466 5.8e-61 240.0 634 34.1
Cfa002061 Carpinus fangiana HOM05D004642 ORTHO05D005466 1.4e-59 235.3 692 32.7
Gorai.009G133100 Gossypium raimondii HOM05D004642 ORTHO05D005466 3.2e-59 234.2 506 36.0
PSO782G0786 Papaver somniferum HOM05D004642 ORTHO05D005466 7.1e-59 233.0 698 33.2
Gohir.D05G129000 Gossypium hirsutum HOM05D004642 ORTHO05D005466 2.1e-58 231.5 507 36.9
Sed0016127 Sechium edule HOM05D004642 ORTHO05D005466 2.7e-58 231.1 573 41.9
Gorai.006G098800 Gossypium raimondii HOM05D004642 ORTHO05D005466 1.3e-57 228.8 533 32.1
Lj3g0008789 Lotus japonicus HOM05D004642 ORTHO05D005466 1.5e-56 225.3 650 44.2
Lsat_1_v5_gn_4_103580 Lactuca sativa HOM05D004642 ORTHO05D005466 3.3e-56 224.2 499 36.1
AUR62016441 Chenopodium quinoa HOM05D004642 ORTHO05D005466 9.6e-56 222.6 683 32.2
unitig_744.g24335 Utricularia gibba HOM05D004642 ORTHO05D005466 9.6e-56 222.6 685 38.5
ClCG09G002170 Citrullus lanatus HOM05D004642 ORTHO05D005466 1.3e-55 222.2 494 39.9
Peaxi162Scf00015g00335 Petunia axillaris HOM05D004642 ORTHO05D005466 8.1e-55 219.5 669 40.7
vmacro16950 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 1.8e-54 218.4 412 41.3
MELO3C024228.2 Cucumis melo HOM05D004642 ORTHO05D005466 3.1e-54 217.6 396 34.8
Thhalv10020153m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 9.0e-54 216.1 667 34.9
Glyma.12G087100 Glycine max HOM05D004642 ORTHO05D005466 9.0e-54 216.1 707 35.2
Gohir.D09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 2.6e-53 214.5 413 35.1
TWI75G1656 Tripterygium wilfordii HOM05D004642 ORTHO05D005466 9.9e-53 212.6 409 39.4
Gohir.A09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 3.8e-52 210.7 413 34.1
Actinidia08974 Actinidia chinensis HOM05D004642 ORTHO05D005466 1.1e-51 209.1 681 30.0
Thecc.06G086400 Theobroma cacao HOM05D004642 ORTHO05D005466 1.1e-51 209.1 734 31.9
CsaV3_7G033140 Cucumis sativus L. HOM05D004642 ORTHO05D005466 7.9e-50 203.0 684 38.7
CiPaw.01G239700 Carya illinoinensis HOM05D004642 ORTHO05D005466 8.7e-49 199.5 707 36.4
Aa31LG8G3170 Aethionema arabicum HOM05D004642 ORTHO05D005466 2.8e-47 194.5 679 34.5
Lalb_Chr04g0262651 Lupinus albus HOM05D004642 ORTHO05D005466 4.8e-47 193.7 701 35.5
GSVIVG01017115001 Vitis vinifera HOM05D004642 ORTHO05D005466 4.8e-47 193.7 498 34.1
PGR102G3321 Punica granatum HOM05D004642 ORTHO05D005466 1.1e-46 192.6 425 37.2
Aqoxy7G01787 Aquilegia oxysepala HOM05D004642 ORTHO05D005466 1.4e-46 192.2 381 39.6
Duzib192G0922 Durio zibethinus HOM05D004642 ORTHO05D005466 3.1e-46 191.0 543 32.0
Medtr4g054960 Medicago truncatula HOM05D004642 ORTHO05D005466 3.4e-45 187.6 641 39.9
Dinv30514 Davidia involucrata HOM05D004642 ORTHO05D005466 4.5e-45 187.2 618 38.7
Sabra01G0147200 Salix brachista HOM05D004642 ORTHO05D005466 2.2e-44 184.9 753 30.8
MSTRG.9454 Avicennia marina HOM05D004642 ORTHO05D005466 6.4e-44 183.3 498 39.6
TAR626G0806 Trochodendron aralioides HOM05D004642 ORTHO05D005466 6.4e-44 183.3 669 28.0
CSS0030593 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 1.4e-43 182.2 562 34.9
CAN.G438.64 Capsicum annuum HOM05D004642 ORTHO05D005466 1.9e-43 181.8 491 39.5
CARHR091130 Cardamine hirsuta HOM05D004642 ORTHO05D005466 7.1e-43 179.9 698 33.2
PSO063G4770 Papaver somniferum HOM05D004642 ORTHO05D005466 1.2e-42 179.1 396 32.8
Manes.11G047800 Manihot esculenta HOM05D004642 ORTHO05D005466 3.5e-42 177.6 677 37.7
AUR62011627 Chenopodium quinoa HOM05D004642 ORTHO05D005466 4.6e-42 177.2 683 30.0
Lj5A61G44 Lonicera japonica HOM05D004642 ORTHO05D005466 6.0e-42 176.8 389 35.0
Hund00614 Selenicereus undatus HOM05D004642 ORTHO05D005466 3.9e-41 174.1 629 36.1
Lalb_Chr01g0012651 Lupinus albus HOM05D004642 ORTHO05D005466 6.7e-41 173.3 669 40.2
Eucgr.F03012 Eucalyptus grandis HOM05D004642 ORTHO05D005466 8.7e-41 172.9 654 43.3
Atru.chr1.3266 Acer truncatum HOM05D004642 ORTHO05D005466 1.5e-40 172.2 711 35.7
CiPaw.02G151400 Carya illinoinensis HOM05D004642 ORTHO05D005466 1.5e-40 172.2 722 33.1
BcaB04g20887 Brassica carinata HOM05D004642 ORTHO05D005466 3.3e-40 171.0 643 32.8
Lalb_Chr14g0373421 Lupinus albus HOM05D004642 ORTHO05D005466 3.3e-40 171.0 686 27.3
ECA248G0988 Erigeron canadensis HOM05D004642 ORTHO05D005466 2.1e-39 168.3 410 34.1
Rhsim12G0197600 Rhododendron simsii HOM05D004642 ORTHO05D005466 2.8e-39 167.9 488 33.8
BcaB04g18872 Brassica carinata HOM05D004642 ORTHO05D005466 6.2e-39 166.8 545 37.6
TAR636G0382 Trochodendron aralioides HOM05D004642 ORTHO05D005466 6.2e-39 166.8 262 41.2
BcaC09g48580 Brassica carinata HOM05D004642 ORTHO05D005466 1.1e-38 166.0 646 26.5
Duzib235G0715 Durio zibethinus HOM05D004642 ORTHO05D005466 4.0e-38 164.1 726 29.1
Nn2g11790 Nelumbo nucifera HOM05D004642 ORTHO05D005466 4.0e-38 164.1 421 33.5
MD09G1213800 Malus domestica HOM05D004642 ORTHO05D005466 6.9e-38 163.3 666 31.8
FAN14G2337 Fragaria x ananassa HOM05D004642 ORTHO05D005466 1.2e-37 162.5 538 36.2
Ah.01g021290 Amaranthus hybridus HOM05D004642 ORTHO05D005466 4.5e-37 160.6 652 29.0
Ciclev10025273m.g Citrus clementina HOM05D004642 ORTHO05D005466 7.6e-37 159.8 562 35.2
FvH4_6g31081 Fragaria vesca HOM05D004642 ORTHO05D005466 1.0e-36 159.5 502 38.2
Dinv38051 Davidia involucrata HOM05D004642 ORTHO05D005466 1.3e-36 159.1 283 36.0
Nn8g39228 Nelumbo nucifera HOM05D004642 ORTHO05D005466 1.4e-35 155.6 387 36.4
Ca_19383_v3 Cicer arietinum L. HOM05D004642 ORTHO05D005466 2.5e-35 154.8 678 36.6
COL.COLO4_30362 Corchorus olitorius HOM05D004642 ORTHO05D005466 9.3e-35 152.9 584 32.2
VMungo1127G1134 Vigna mungo HOM05D004642 ORTHO05D005466 2.1e-34 151.8 661 37.5
FAN09G1651 Fragaria x ananassa HOM05D004642 ORTHO05D005466 1.0e-33 149.4 504 38.1
RcHm_v2.0_Chr2g0137781 Rosa chinensis HOM05D004642 ORTHO05D005466 3.9e-33 147.5 490 30.8
BraA03t13110Z Brassica rapa HOM05D004642 ORTHO05D005466 2.5e-32 144.8 487 30.8
THA.LOC104817998 Tarenaya hassleriana HOM05D004642 ORTHO05D005466 9.6e-32 142.9 681 35.4
CDE06G0246 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 1.3e-31 142.5 588 32.0
SGA_v2.0_scaffold37G14818 Striga asiatica HOM05D004642 ORTHO05D005466 3.7e-31 141.0 704 33.7
MD09G1213500 Malus domestica HOM05D004642 ORTHO05D005466 1.1e-30 139.4 324 37.0
C03p48030 Brassica napus HOM05D004642 ORTHO05D005466 1.4e-30 139.0 634 36.6
BcaC01g03843 Brassica carinata HOM05D004642 ORTHO05D005466 1.8e-30 138.7 634 36.8
BolC3t17082H Brassica oleracea HOM05D004642 ORTHO05D005466 1.8e-30 138.7 634 36.8
CDE07G1358 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 9.0e-30 136.3 591 26.1
TPR.G15588 Trifolium pratense HOM05D004642 ORTHO05D005466 7.6e-29 133.3 325 35.4
Phvul.011G092000 Phaseolus vulgaris HOM05D004642 ORTHO05D005466 1.7e-28 132.1 631 33.1
Sed0016916 Sechium edule HOM05D004642 ORTHO05D005466 2.2e-28 131.7 689 26.0
A05p33450 Brassica napus HOM05D004642 ORTHO05D005466 5.0e-28 130.6 520 30.8
HanXRQChr16g0500971 Helianthus annuus HOM05D004642 ORTHO05D005466 5.0e-28 130.6 416 27.9
A03p39630 Brassica napus HOM05D004642 ORTHO05D005466 8.4e-28 129.8 629 33.4
Hma1.2p1_0323F.1_g125200 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 1.1e-27 129.4 167 47.3
arahy.Tifrunner.gnm1.ann1.I53961 Arachis hypogaea HOM05D004642 ORTHO05D005466 5.5e-27 127.1 409 30.1
CANSAT56G1090 Cannabis sativa HOM05D004642 ORTHO05D005466 5.5e-27 127.1 496 37.9
Glyma.11G187500 Glycine max HOM05D004642 ORTHO05D005466 7.2e-27 126.7 663 25.0
Zm00001eb283760 Zea mays HOM05D004642 ORTHO05D005466 2.1e-26 125.2 663 23.2
BcaB06g25698 Brassica carinata HOM05D004642 ORTHO05D005466 4.6e-26 124.0 381 32.0
HanXRQChr09g0275271 Helianthus annuus HOM05D004642 ORTHO05D005466 7.9e-26 123.2 196 39.8
arahy.Tifrunner.gnm1.ann1.D5EQ93 Arachis hypogaea HOM05D004642 ORTHO05D005466 1.3e-25 122.5 406 28.8
HPP92_020045 Vanilla planifolia HOM05D004642 ORTHO05D005466 7.4e-24 116.7 410 25.6
EL10Ac9g21996 Beta vulgaris HOM05D004642 ORTHO05D005466 1.3e-23 115.9 212 40.6
FAN02G1410 Fragaria x ananassa HOM05D004642 ORTHO05D005466 8.2e-23 113.2 243 36.2
Psat7g189080 Pisum sativum HOM05D004642 ORTHO05D005466 3.1e-22 111.3 665 30.2
C01p48370 Brassica napus HOM05D004642 ORTHO05D005466 1.5e-21 109.0 423 27.4
Zm00001eb122200 Zea mays HOM05D004642 ORTHO05D005466 1.5e-21 109.0 400 31.0
arahy.Tifrunner.gnm1.ann1.CA04QB Arachis hypogaea HOM05D004642 ORTHO05D005466 2.6e-21 108.2 677 30.9
arahy.Tifrunner.gnm1.ann1.Z6VQ0W Arachis hypogaea HOM05D004642 ORTHO05D005466 2.6e-21 108.2 677 30.9
FAN05G5776 Fragaria x ananassa HOM05D004642 ORTHO05D005466 5.9e-21 107.1 218 34.9
Hund06610 Selenicereus undatus HOM05D004642 ORTHO05D005466 5.9e-21 107.1 659 25.2
Sc21g0005100 Simmondsia chinensis HOM05D004642 ORTHO05D005466 3.8e-20 104.4 682 31.8
ATR0037G055 Amborella trichopoda HOM05D004642 ORTHO05D005466 5.0e-20 104.0 699 29.6
Sp3g14350 Schrenkiella parvula HOM05D004642 ORTHO05D005466 4.2e-19 100.9 679 33.9
Os05g0180400 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 9.4e-19 99.8 394 27.7
BraA05t22169Z Brassica rapa HOM05D004642 ORTHO05D005466 1.2e-18 99.4 509 29.9
BolC1t04795H Brassica oleracea HOM05D004642 ORTHO05D005466 3.6e-18 97.8 234 34.2
BolC5t33791H Brassica oleracea HOM05D004642 ORTHO05D005466 7.9e-18 96.7 489 27.2
AL3G28650 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 1.0e-17 96.3 679 31.7
TAR624G0442 Trochodendron aralioides HOM05D004642 ORTHO05D005466 1.8e-17 95.5 116 49.1
MD09G1212900 Malus domestica HOM05D004642 ORTHO05D005466 2.3e-17 95.1 143 43.4
Os01g0180300 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 3.0e-17 94.7 407 32.7
AT3G16000 Arabidopsis thaliana HOM05D004642 ORTHO05D005466 3.9e-17 94.4 678 31.9
Thhalv10023042m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 2.5e-16 91.7 235 30.2
C05p50450 Brassica napus HOM05D004642 ORTHO05D005466 9.7e-16 89.7 379 29.3
HPP92_019980 Vanilla planifolia HOM05D004642 ORTHO05D005466 3.4e-13 81.3 346 27.2
Carub.0003s1573 Capsella rubella HOM05D004642 ORTHO05D005466 5.9e-13 80.5 646 30.8
SEGI_16798 Sequoiadendron giganteum HOM05D004642 ORTHO05D005466 9.7e-08 63.2 702 21.7
BolC1t04793H Brassica oleracea HOM05D004642 ORTHO05D005466 6.3e-07 60.5 127 34.6
COL.COLO4_36913 Corchorus olitorius HOM05D004642 ORTHO05D005466 8.2e-07 60.1 86 39.5
MD09G1213400 Malus domestica HOM05D004642 ORTHO05D005466 1.8e-06 58.9 77 45.5
BraA01t03868Z Brassica rapa HOM05D004642 ORTHO05D005466 2.4e-06 58.5 372 24.7
Oeu063962.1 Olea europaea HOM05D004642 ORTHO05D005466 4.1e-06 57.8 275 29.8


User provided reference genes

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