Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G01995 Striga asiatica HOM05D005040 ORTHO05D005984 7.1e-81 303.9 156 100.0
Cc04_g03490 Coffea canephora HOM05D005040 ORTHO05D005984 4.9e-66 254.6 150 81.3
Migut.I00862 Erythranthe guttata HOM05D005040 ORTHO05D005984 1.2e-64 250.0 150 81.3
PGSC0003DMG400002565 Solanum tuberosum HOM05D005040 ORTHO05D005984 2.7e-64 248.8 150 76.7
Peaxi162Scf00015g00334 Petunia axillaris HOM05D005040 ORTHO05D005984 3.5e-64 248.4 150 76.7
Solyc03g120240.3 Solanum lycopersicum HOM05D005040 ORTHO05D005984 3.5e-64 248.4 150 76.7
Sopen03g039120 Solanum pennellii HOM05D005040 ORTHO05D005984 6.0e-64 247.7 150 76.7
PGSC0003DMG400028614 Solanum tuberosum HOM05D005040 ORTHO05D005984 6.0e-64 247.7 150 76.7
Nitab4.5_0010263g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.3e-63 246.5 150 77.3
Nitab4.5_0000671g0070 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.7e-63 246.1 150 77.3
SGA_v2.0_scaffold37G14817 Striga asiatica HOM05D005040 ORTHO05D005984 2.3e-63 245.7 152 77.6
Thecc.06G086300 Theobroma cacao HOM05D005040 ORTHO05D005984 2.3e-63 245.7 150 78.7
Gohir.D10G071700 Gossypium hirsutum HOM05D005040 ORTHO05D005984 3.0e-63 245.4 150 77.3
Rhsim08G0220800 Rhododendron simsii HOM05D005040 ORTHO05D005984 3.9e-63 245.0 150 78.0
Atru.chr1.3264 Acer truncatum HOM05D005040 ORTHO05D005984 5.1e-63 244.6 150 76.7
arahy.Tifrunner.gnm1.ann1.AGNB7P Arachis hypogaea HOM05D005040 ORTHO05D005984 6.6e-63 244.2 150 75.3
arahy.Tifrunner.gnm1.ann1.MTRR1H Arachis hypogaea HOM05D005040 ORTHO05D005984 6.6e-63 244.2 150 75.3
Nitab4.5_0008982g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 6.6e-63 244.2 150 75.3
Ciclev10026697m.g Citrus clementina HOM05D005040 ORTHO05D005984 8.7e-63 243.8 150 77.3
Gorai.011G077000 Gossypium raimondii HOM05D005040 ORTHO05D005984 8.7e-63 243.8 150 78.0
MD09G1213900 Malus domestica HOM05D005040 ORTHO05D005984 1.9e-62 242.7 150 75.3
Lj9C507G12 Lonicera japonica HOM05D005040 ORTHO05D005984 3.3e-62 241.9 150 76.7
CSS0018986 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 5.6e-62 241.1 151 75.5
CSS0035607 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 5.6e-62 241.1 151 75.5
CAN.G438.63 Capsicum annuum HOM05D005040 ORTHO05D005984 5.6e-62 241.1 150 74.7
Lalb_Chr25g0279631 Lupinus albus HOM05D005040 ORTHO05D005984 5.6e-62 241.1 150 74.0
Oeu033483.1 Olea europaea HOM05D005040 ORTHO05D005984 7.3e-62 240.7 150 77.3
MD17G1196000 Malus domestica HOM05D005040 ORTHO05D005984 9.6e-62 240.4 150 74.7
Gohir.A10G079800 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.3e-61 240.0 148 77.7
GSVIVG01017116001 Vitis vinifera HOM05D005040 ORTHO05D005984 1.6e-61 239.6 150 76.0
Manes.04G123000 Manihot esculenta HOM05D005040 ORTHO05D005984 2.1e-61 239.2 150 76.0
Manes.11G047900 Manihot esculenta HOM05D005040 ORTHO05D005984 2.1e-61 239.2 150 76.0
Gohir.A09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.8e-61 238.8 150 76.7
TWI75G0398 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 2.8e-61 238.8 150 75.3
Gorai.006G098900 Gossypium raimondii HOM05D005040 ORTHO05D005984 6.2e-61 237.7 150 75.3
AUR62011626 Chenopodium quinoa HOM05D005040 ORTHO05D005984 8.1e-61 237.3 151 74.2
Sopen12g022320 Solanum pennellii HOM05D005040 ORTHO05D005984 8.1e-61 237.3 150 74.0
HanXRQChr09g0275291 Helianthus annuus HOM05D005040 ORTHO05D005984 1.1e-60 236.9 150 74.0
unitig_8.g3893 Utricularia gibba HOM05D005040 ORTHO05D005984 1.1e-60 236.9 150 78.0
CANSAT56G1939 Cannabis sativa HOM05D005040 ORTHO05D005984 1.4e-60 236.5 150 74.7
Lj3g0009600 Lotus japonicus HOM05D005040 ORTHO05D005984 1.4e-60 236.5 151 72.8
Lalb_Chr04g0262641 Lupinus albus HOM05D005040 ORTHO05D005984 1.4e-60 236.5 150 73.3
Prupe.3G071900 Prunus persica HOM05D005040 ORTHO05D005984 1.4e-60 236.5 150 74.0
DCAR_007558 Daucus carota HOM05D005040 ORTHO05D005984 1.8e-60 236.1 150 76.0
Lj3g0025298 Lotus japonicus HOM05D005040 ORTHO05D005984 1.8e-60 236.1 150 72.0
Gohir.D09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.4e-60 235.7 150 74.7
TPR.G24183 Trifolium pratense HOM05D005040 ORTHO05D005984 2.4e-60 235.7 150 74.0
Dinv38056 Davidia involucrata HOM05D005040 ORTHO05D005984 3.1e-60 235.3 150 74.7
Sc21g0005090 Simmondsia chinensis HOM05D005040 ORTHO05D005984 3.1e-60 235.3 149 72.5
arahy.Tifrunner.gnm1.ann1.PJIU2I Arachis hypogaea HOM05D005040 ORTHO05D005984 4.0e-60 235.0 150 71.3
arahy.Tifrunner.gnm1.ann1.QU6Z4C Arachis hypogaea HOM05D005040 ORTHO05D005984 4.0e-60 235.0 150 71.3
Duzib235G0181 Durio zibethinus HOM05D005040 ORTHO05D005984 4.0e-60 235.0 145 77.9
ClCG09G002180 Citrullus lanatus HOM05D005040 ORTHO05D005984 6.9e-60 234.2 150 74.7
Medtr4g011980 Medicago truncatula HOM05D005040 ORTHO05D005984 6.9e-60 234.2 150 71.3
Oeu025385.1 Olea europaea HOM05D005040 ORTHO05D005984 9.0e-60 233.8 150 75.3
PGR102G2548 Punica granatum HOM05D005040 ORTHO05D005984 9.0e-60 233.8 150 74.0
CSS0024080 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 1.2e-59 233.4 150 73.3
Nn8g39231 Nelumbo nucifera HOM05D005040 ORTHO05D005984 1.2e-59 233.4 151 74.2
TAR626G1436 Trochodendron aralioides HOM05D005040 ORTHO05D005984 1.2e-59 233.4 145 74.5
TAR624G1120 Trochodendron aralioides HOM05D005040 ORTHO05D005984 1.5e-59 233.0 152 71.1
HPP92_007677 Vanilla planifolia HOM05D005040 ORTHO05D005984 1.5e-59 233.0 150 72.0
Gohir.A05G129132 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.0e-59 232.6 150 74.7
HanXRQChr16g0501001 Helianthus annuus HOM05D005040 ORTHO05D005984 2.0e-59 232.6 150 74.0
MELO3C024227.2 Cucumis melo HOM05D005040 ORTHO05D005984 2.6e-59 232.3 150 74.0
Glyma.08G207000 Glycine max HOM05D005040 ORTHO05D005984 2.6e-59 232.3 150 71.3
Eucgr.J02995 Eucalyptus grandis HOM05D005040 ORTHO05D005984 3.4e-59 231.9 147 74.1
FAN14G0270 Fragaria x ananassa HOM05D005040 ORTHO05D005984 3.4e-59 231.9 153 73.9
FvH4_6g31060 Fragaria vesca HOM05D005040 ORTHO05D005984 4.5e-59 231.5 152 74.3
FAN09G4279 Fragaria x ananassa HOM05D005040 ORTHO05D005984 4.5e-59 231.5 152 74.3
CsaV3_7G033130 Cucumis sativus L. HOM05D005040 ORTHO05D005984 7.6e-59 230.7 150 73.3
Nn2g11793 Nelumbo nucifera HOM05D005040 ORTHO05D005984 7.6e-59 230.7 150 72.7
Hund06608 Selenicereus undatus HOM05D005040 ORTHO05D005984 7.6e-59 230.7 148 73.6
vmacro18916 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 7.6e-59 230.7 150 72.7
Lj5C61G9 Lonicera japonica HOM05D001315 ORTHO05D005984 9.9e-59 230.3 154 70.1
FAN02G3733 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.3e-58 229.9 152 73.7
Psat7g252720 Pisum sativum HOM05D005040 ORTHO05D005984 1.7e-58 229.6 150 70.0
CiPaw.01G239800 Carya illinoinensis HOM05D005040 ORTHO05D005984 2.2e-58 229.2 150 71.3
Gorai.009G133000 Gossypium raimondii HOM05D005040 ORTHO05D005984 2.9e-58 228.8 150 73.3
PSO782G4813 Papaver somniferum HOM05D005040 ORTHO05D005984 2.9e-58 228.8 150 72.0
Glyma.07G006400 Glycine max HOM05D005040 ORTHO05D005984 3.8e-58 228.4 150 70.7
TWI18G1133 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 3.8e-58 228.4 150 70.7
Phvul.010G150900 Phaseolus vulgaris HOM05D005040 ORTHO05D005984 4.9e-58 228.0 150 70.0
Rhsim12G0197400 Rhododendron simsii HOM05D005040 ORTHO05D005984 4.9e-58 228.0 151 71.5
Zm00001eb161080 Zea mays HOM05D005040 ORTHO05D005984 4.9e-58 228.0 150 69.3
CiPaw.02G151500 Carya illinoinensis HOM05D005040 ORTHO05D005984 6.4e-58 227.6 150 70.7
VMungo0331G0128 Vigna mungo HOM05D005040 ORTHO05D005984 6.4e-58 227.6 150 69.3
PSO063G7160 Papaver somniferum HOM05D005040 ORTHO05D005984 1.1e-57 226.9 150 71.3
Sabra03G0031500 Salix brachista HOM05D005040 ORTHO05D005984 1.1e-57 226.9 150 74.0
FAN05G0686 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.4e-57 226.5 152 73.7
vmacro16949 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 2.4e-57 225.7 150 68.7
RcHm_v2.0_Chr2g0137751 Rosa chinensis HOM05D005040 ORTHO05D005984 3.2e-57 225.3 152 71.1
Sed0010677 Sechium edule HOM05D005040 ORTHO05D005984 1.2e-56 223.4 150 70.0
EL10Ac9g21995 Beta vulgaris HOM05D005040 ORTHO05D005984 1.6e-56 223.0 149 72.5
Os01g0593600 Oryza sativa ssp. japonica HOM05D005040 ORTHO05D005984 1.6e-56 223.0 150 66.7
Potri.003G056100 Populus trichocarpa HOM05D005040 ORTHO05D005984 2.7e-56 222.2 150 72.7
Hund00613 Selenicereus undatus HOM05D005040 ORTHO05D005984 3.5e-56 221.9 149 69.1
BcaC03g16009 Brassica carinata HOM05D005040 ORTHO05D005984 7.9e-56 220.7 154 66.9
Gohir.D05G128900 Gossypium hirsutum HOM05D005040 ORTHO05D005984 7.9e-56 220.7 150 72.7
C02p37640 Brassica napus HOM05D005040 ORTHO05D005984 1.0e-55 220.3 154 66.9
BraA02t07378Z Brassica rapa HOM05D005040 ORTHO05D005984 1.3e-55 219.9 154 65.6
Potri.001G179500 Populus trichocarpa HOM05D005040 ORTHO05D005984 1.3e-55 219.9 150 70.7
QL05p024322 Quercus lobata HOM05D005040 ORTHO05D005984 1.3e-55 219.9 152 69.1
Carub.0002s2753 Capsella rubella HOM05D005040 ORTHO05D005984 2.3e-55 219.2 150 68.0
BolC2t09779H Brassica oleracea HOM05D005040 ORTHO05D005984 3.0e-55 218.8 154 66.2
Sabra01G0147300 Salix brachista HOM05D005040 ORTHO05D005984 3.0e-55 218.8 150 71.3
AT1G79985 Arabidopsis thaliana HOM05D005040 ORTHO05D005984 6.7e-55 217.6 150 67.3
CARHR074500 Cardamine hirsuta HOM05D005040 ORTHO05D005984 6.7e-55 217.6 150 66.7
AL2G41560 Arabidopsis lyrata HOM05D005040 ORTHO05D005984 8.7e-55 217.2 150 67.3
Aa31LG4G290 Aethionema arabicum HOM05D001315 ORTHO05D001618 1.1e-54 216.9 150 66.0
A07p26430 Brassica napus HOM05D001315 ORTHO05D001618 4.3e-54 214.9 152 65.1
Thhalv10019282m.g Eutrema salsugineum HOM05D005040 ORTHO05D005984 4.3e-54 214.9 150 66.0
Duzib192G0809 Durio zibethinus HOM05D005040 ORTHO05D005984 5.6e-54 214.5 148 71.6
Sp5g35760 Schrenkiella parvula HOM05D005040 ORTHO05D005984 5.6e-54 214.5 150 64.7
C06p28820 Brassica napus HOM05D001315 ORTHO05D001618 7.4e-54 214.2 152 64.5
BraA07t30287Z Brassica rapa HOM05D001315 ORTHO05D001618 1.6e-53 213.0 150 65.3
THA.LOC104821737 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 1.4e-52 209.9 155 65.8
SEGI_18303 Sequoiadendron giganteum HOM05D005040 ORTHO05D005984 1.8e-52 209.5 150 66.0
Nitab4.5_0002438g0060 Nicotiana tabacum HOM05D005040 ORTHO05D005984 2.4e-52 209.1 150 67.3
THA.LOC104813561 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 6.9e-52 207.6 149 67.1
Gorai.002G059200 Gossypium raimondii HOM05D005040 ORTHO05D005984 9.0e-52 207.2 141 68.8
A02p23850 Brassica napus HOM05D005040 ORTHO05D005984 3.4e-51 205.3 172 58.1
FvH4_6g49470 Fragaria vesca HOM05D005040 ORTHO05D005984 3.4e-51 205.3 151 64.9
FAN14G2190 Fragaria x ananassa HOM05D005040 ORTHO05D005984 9.9e-51 203.8 151 63.6
Mapoly0002s0050 Marchantia polymorpha HOM05D005040 ORTHO05D005984 2.1e-48 196.1 156 60.9
BcaB05g25300 Brassica carinata HOM05D005040 ORTHO05D005984 2.3e-47 192.6 150 60.7
CBR_g53740 Chara braunii HOM05D005040 ORTHO05D005984 2.3e-47 192.6 145 60.7
Gohir.A02G121600 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.9e-46 189.5 151 62.3
Lsat_1_v5_gn_4_103600 Lactuca sativa HOM05D005040 ORTHO05D005984 1.1e-44 183.7 119 74.8
ECA232G2706 Erigeron canadensis HOM05D005040 ORTHO05D005984 5.3e-44 181.4 119 73.1
Pp3c14_26240 Physcomitrium patens HOM05D005040 ORTHO05D005984 1.5e-43 179.9 156 54.5
Actinidia24761 Actinidia chinensis HOM05D005040 ORTHO05D005984 7.6e-43 177.6 117 70.9
BcaC08g45282 Brassica carinata HOM05D005040 ORTHO05D005984 7.9e-40 167.5 125 62.4
unitig_22.g5468 Utricularia gibba HOM05D005040 ORTHO05D005984 7.9e-40 167.5 179 54.7
CDE02G1346 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 8.7e-39 164.1 108 70.4
CDE04G1379 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 2.8e-37 159.1 108 67.6
Cre10.g423950 Chlamydomonas reinhardtii HOM05D005040 ORTHO05D005984 1.4e-36 156.8 153 48.4
Actinidia01801 Actinidia chinensis HOM05D005040 ORTHO05D005984 6.1e-32 141.4 95 69.5
PRCOL_00001887 Prasinoderma coloniale HOM05D005040 ORTHO05D005984 7.4e-30 134.4 144 45.8
arahy.Tifrunner.gnm1.ann1.1DTY35 Arachis hypogaea HOM05D005040 ORTHO05D005984 1.1e-28 130.6 120 53.3
SalBow2G1342 Salvia bowleyana HOM05D005040 ORTHO05D005984 4.1e-28 128.6 80 82.5
Actinidia32759 Actinidia chinensis HOM05D005040 ORTHO05D005984 1.5e-27 126.7 75 78.7
Gohir.D03G064100 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.6e-27 125.9 98 63.3
Lalb_Chr01g0012631 Lupinus albus HOM05D005040 ORTHO05D005984 3.4e-27 125.6 72 76.4
Zm00001eb357580 Zea mays HOM05D005040 ORTHO05D005984 1.0e-26 124.0 72 73.6
SalBow2G3126 Salvia bowleyana HOM05D005040 ORTHO05D005984 4.2e-25 118.6 89 68.5
MBI01_g34903_MAGBIO Magnolia biondii HOM05D005040 ORTHO05D005984 6.1e-24 114.8 75 70.7
Lalb_Chr01g0012641 Lupinus albus HOM05D005040 ORTHO05D005984 1.0e-23 114.0 75 74.7
DCAR_026311 Daucus carota HOM05D001315 ORTHO05D001618 1.1e-22 110.5 75 72.0
Gohir.D02G105550 Gossypium hirsutum HOM05D005040 ORTHO05D005984 4.4e-22 108.6 58 82.8
Gorai.005G119900 Gossypium raimondii HOM05D005040 ORTHO05D005984 4.4e-22 108.6 58 82.8
Pp3c17_23510 Physcomitrium patens HOM05D005040 ORTHO05D005984 1.3e-21 107.1 149 38.9
Solyc12g043060.1 Solanum lycopersicum HOM05D005040 ORTHO05D005984 3.8e-10 68.9 53 67.9


User provided reference genes

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