Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G01954 Striga asiatica HOM05D000786 ORTHO05D000779 2.8e-70 268.5 132 100.0
Migut.B00992 Erythranthe guttata HOM05D000786 ORTHO05D000779 5.3e-21 104.8 62 72.6
MSTRG.20397 Avicennia marina HOM05D000786 ORTHO05D000779 2.3e-16 89.4 62 62.9
Migut.N02109 Erythranthe guttata HOM05D000786 ORTHO05D000779 8.2e-14 80.9 58 69.0
Sopen01g043790 Solanum pennellii HOM05D000786 ORTHO05D000779 7.2e-10 67.8 44 68.2
PGSC0003DMG400002816 Solanum tuberosum HOM05D000786 ORTHO05D000779 3.6e-09 65.5 44 65.9
TPR.G19780 Trifolium pratense HOM05D000786 ORTHO05D000779 6.1e-09 64.7 50 52.0
Atru.chr2.141 Acer truncatum HOM05D000786 ORTHO05D000779 8.0e-09 64.3 47 59.6
Cc02_g34770 Coffea canephora HOM05D000786 ORTHO05D000779 8.0e-09 64.3 73 43.8
Gohir.D12G130300 Gossypium hirsutum HOM05D000786 ORTHO05D000779 8.0e-09 64.3 74 45.9
FvH4_1g07900 Fragaria vesca HOM05D000786 ORTHO05D000779 1.4e-08 63.5 64 46.9
Gorai.008G141600 Gossypium raimondii HOM05D000786 ORTHO05D000779 2.3e-08 62.8 73 46.6
Psat6g163480 Pisum sativum HOM05D000786 ORTHO05D000779 2.3e-08 62.8 50 52.0
SHI00507 Sapria himalayana HOM05D000786 ORTHO05D000779 2.3e-08 62.8 46 52.2
Gohir.A12G126900 Gossypium hirsutum HOM05D000786 ORTHO05D000779 4.0e-08 62.0 74 44.6
CsaV3_3G005210 Cucumis sativus L. HOM05D000786 ORTHO05D000779 5.2e-08 61.6 57 47.4
MELO3C025388.2 Cucumis melo HOM05D000786 ORTHO05D000779 6.7e-08 61.2 48 52.1
Manes.05G001600 Manihot esculenta HOM05D000786 ORTHO05D000779 6.7e-08 61.2 76 42.1
Medtr1g087730 Medicago truncatula HOM05D000786 ORTHO05D000779 6.7e-08 61.2 50 50.0
RcHm_v2.0_Chr2g0093771 Rosa chinensis HOM05D000786 ORTHO05D000779 6.7e-08 61.2 49 55.1
Sopen09g030450 Solanum pennellii HOM05D000786 ORTHO05D000779 6.7e-08 61.2 50 54.0
CiPaw.08G156800 Carya illinoinensis HOM05D000786 ORTHO05D000779 1.2e-07 60.5 73 43.8
Dinv37893 Davidia involucrata HOM05D000786 ORTHO05D000779 1.2e-07 60.5 66 42.4
Duzib133G0956 Durio zibethinus HOM05D000786 ORTHO05D000779 1.5e-07 60.1 72 41.7
Glyma.13G106000 Glycine max HOM05D000786 ORTHO05D000779 1.5e-07 60.1 66 42.4
Medtr8g018360 Medicago truncatula HOM05D000786 ORTHO05D000779 1.5e-07 60.1 63 47.6
TPR.G7896 Trifolium pratense HOM05D000786 ORTHO05D000779 1.5e-07 60.1 47 59.6
Cpa.g.sc18.2 Carica papaya HOM05D000786 ORTHO05D000779 2.0e-07 59.7 77 39.0
CiPaw.07G027400 Carya illinoinensis HOM05D000786 ORTHO05D000779 2.0e-07 59.7 52 48.1
ClCG06G009930 Citrullus lanatus HOM05D000786 ORTHO05D000779 2.0e-07 59.7 44 52.3
Eucgr.F03151 Eucalyptus grandis HOM05D000786 ORTHO05D000779 2.0e-07 59.7 48 54.2
Nn3g21623 Nelumbo nucifera HOM05D000786 ORTHO05D000779 2.0e-07 59.7 53 50.9
THA.LOC104818741 Tarenaya hassleriana HOM05D000786 ORTHO05D000779 2.0e-07 59.7 47 51.1
TWI12G0435 Tripterygium wilfordii HOM05D000786 ORTHO05D000779 2.0e-07 59.7 63 39.7
Cpa.g.sc25.79 Carica papaya HOM05D000786 ORTHO05D000779 2.6e-07 59.3 49 51.0
Prupe.7G206300 Prunus persica HOM05D000786 ORTHO05D000779 2.6e-07 59.3 66 42.4
Sabra01G0143900 Salix brachista HOM05D000786 ORTHO05D000779 2.6e-07 59.3 67 46.3
Atru.chr5.1054 Acer truncatum HOM05D000786 ORTHO05D000779 3.3e-07 58.9 43 55.8
CANSAT56G0558 Cannabis sativa HOM05D000786 ORTHO05D000779 3.3e-07 58.9 49 53.1
CAN.G668.24 Capsicum annuum HOM05D000786 ORTHO05D000779 3.3e-07 58.9 48 54.2
Ca_10303_v3 Cicer arietinum L. HOM05D000786 ORTHO05D000779 3.3e-07 58.9 49 51.0
ClCG10G005480 Citrullus lanatus HOM05D000786 ORTHO05D000779 3.3e-07 58.9 39 64.1
Hma1.2p1_0496F.1_g165960 Hydrangea macrophylla HOM05D000786 ORTHO05D000779 3.3e-07 58.9 48 54.2
Sed0012854 Sechium edule HOM05D000786 ORTHO05D000779 3.3e-07 58.9 42 59.5
Solyc09g075650.3 Solanum lycopersicum HOM05D000786 ORTHO05D000779 3.3e-07 58.9 48 54.2
PGSC0003DMG400031801 Solanum tuberosum HOM05D000786 ORTHO05D000779 3.3e-07 58.9 48 54.2
Thecc.01G309800 Theobroma cacao HOM05D000786 ORTHO05D000779 3.3e-07 58.9 75 40.0
CSS0019360 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D000779 4.4e-07 58.5 47 53.2
CSS0023598 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D000779 4.4e-07 58.5 50 50.0
Carub.0003s0508 Capsella rubella HOM05D000786 ORTHO05D000779 4.4e-07 58.5 71 43.7
MELO3C008511.2 Cucumis melo HOM05D000786 ORTHO05D000779 4.4e-07 58.5 44 52.3
MELO3C017928.2 Cucumis melo HOM05D000786 ORTHO05D000779 4.4e-07 58.5 43 55.8
CsaV3_4G001090 Cucumis sativus L. HOM05D000786 ORTHO05D000779 4.4e-07 58.5 43 55.8
Glyma.10G015200 Glycine max HOM05D000786 ORTHO05D000779 4.4e-07 58.5 48 56.2
Glyma.19G229300 Glycine max HOM05D000786 ORTHO05D000779 4.4e-07 58.5 67 37.3
Nitab4.5_0000116g0100 Nicotiana tabacum HOM05D000786 ORTHO05D000779 4.4e-07 58.5 48 54.2
Nitab4.5_0004002g0020 Nicotiana tabacum HOM05D000786 ORTHO05D000779 4.4e-07 58.5 48 54.2
Peaxi162Scf00001g00286 Petunia axillaris HOM05D000786 ORTHO05D000779 4.4e-07 58.5 48 56.2
TPR.G9446 Trifolium pratense HOM05D000786 ORTHO05D000779 4.4e-07 58.5 49 53.1
Cpa.g.sc48.139 Carica papaya HOM05D000786 ORTHO05D000779 5.7e-07 58.2 48 54.2
Cfa005844 Carpinus fangiana HOM05D000786 ORTHO05D000779 5.7e-07 58.2 43 53.5
Cfa006682 Carpinus fangiana HOM05D000786 ORTHO05D000779 5.7e-07 58.2 46 52.2
Haze_04084 Corylus avellana HOM05D000786 ORTHO05D000779 5.7e-07 58.2 46 52.2
Nitab4.5_0001519g0070 Nicotiana tabacum HOM05D000786 ORTHO05D000779 5.7e-07 58.2 49 49.0
arahy.Tifrunner.gnm1.ann1.AKN0IM Arachis hypogaea HOM05D000786 ORTHO05D000779 7.5e-07 57.8 58 51.7
Haze_05005 Corylus avellana HOM05D000786 ORTHO05D000779 7.5e-07 57.8 76 38.2
Duzib138G1722 Durio zibethinus HOM05D000786 ORTHO05D000779 7.5e-07 57.8 52 46.2
Duzib235G0670 Durio zibethinus HOM05D000786 ORTHO05D000779 7.5e-07 57.8 48 52.1
Glyma.02G014500 Glycine max HOM05D000786 ORTHO05D000779 7.5e-07 57.8 48 52.1
Medtr8g018320 Medicago truncatula HOM05D000786 ORTHO05D000779 7.5e-07 57.8 52 51.9
QL02p062146 Quercus lobata HOM05D000786 ORTHO05D000779 7.5e-07 57.8 55 47.3
Rhsim13G0006500 Rhododendron simsii HOM05D000786 ORTHO05D000779 7.5e-07 57.8 63 38.1
vmacro02416 Vaccinium macrocarpon HOM05D000786 ORTHO05D000779 7.5e-07 57.8 48 50.0
VMungo0331G1400 Vigna mungo HOM05D000786 ORTHO05D000779 7.5e-07 57.8 49 57.1
C05p61500 Brassica napus HOM05D000786 ORTHO05D000779 9.7e-07 57.4 68 41.2
BraA05t22947Z Brassica rapa HOM05D000786 ORTHO05D000779 9.7e-07 57.4 68 41.2
CARHR080180 Cardamine hirsuta HOM05D000786 ORTHO05D000779 9.7e-07 57.4 68 41.2
ClCG10G011210 Citrullus lanatus HOM05D000786 ORTHO05D000779 9.7e-07 57.4 43 55.8
MD02G1082500 Malus domestica HOM05D000786 ORTHO05D000779 9.7e-07 57.4 49 51.0
Os05g0356800 Oryza sativa ssp. japonica HOM05D000786 ORTHO05D000779 9.7e-07 57.4 42 61.9
PGR083G1617 Punica granatum HOM05D000786 ORTHO05D000779 9.7e-07 57.4 46 54.3
PGR119G1103 Punica granatum HOM05D000786 ORTHO05D000779 9.7e-07 57.4 43 53.5
RcHm_v2.0_Chr3g0456821 Rosa chinensis HOM05D013158 ORTHO05D000779 9.7e-07 57.4 44 56.8
Sabra06G0116700 Salix brachista HOM05D000786 ORTHO05D000779 9.7e-07 57.4 49 49.0
Sp3g04610 Schrenkiella parvula HOM05D000786 ORTHO05D000779 9.7e-07 57.4 68 42.6
TAR636G3362 Trochodendron aralioides HOM05D000786 ORTHO05D000779 9.7e-07 57.4 76 39.5
CiPaw.07G114700 Carya illinoinensis HOM05D000786 ORTHO05D000779 1.3e-06 57.0 51 49.0
MD15G1210400 Malus domestica HOM05D000786 ORTHO05D000779 1.3e-06 57.0 48 52.1
Manes.11G023800 Manihot esculenta HOM05D000786 ORTHO05D000779 1.3e-06 57.0 48 52.1
Medtr4g125990 Medicago truncatula HOM05D000786 ORTHO05D000779 1.3e-06 57.0 48 52.1
Potri.001G197700 Populus trichocarpa HOM05D000786 ORTHO05D000779 1.3e-06 57.0 48 52.1
TWI18G0458 Tripterygium wilfordii HOM05D000786 ORTHO05D000779 1.3e-06 57.0 57 42.1
VMungo1215G2827 Vigna mungo HOM05D000786 ORTHO05D000779 1.3e-06 57.0 48 52.1
Ciclev10026799m.g Citrus clementina HOM05D000786 ORTHO05D000779 1.7e-06 56.6 49 53.1
COL.COLO4_23268 Corchorus olitorius HOM05D000786 ORTHO05D000779 1.7e-06 56.6 49 51.0
Thhalv10021773m.g Eutrema salsugineum HOM05D000786 ORTHO05D000779 1.7e-06 56.6 67 41.8
Glyma.08G190200 Glycine max HOM05D000786 ORTHO05D000779 1.7e-06 56.6 49 55.1
Nn4g25661 Nelumbo nucifera HOM05D000786 ORTHO05D000779 1.7e-06 56.6 43 58.1
Phvul.010G136400 Phaseolus vulgaris HOM05D000786 ORTHO05D000779 1.7e-06 56.6 47 59.6
Sabra03G0022700 Salix brachista HOM05D000786 ORTHO05D000779 1.7e-06 56.6 49 46.9
AT3G05725 Arabidopsis thaliana HOM05D000786 ORTHO05D000779 2.2e-06 56.2 68 42.6
arahy.Tifrunner.gnm1.ann1.RDA3PX Arachis hypogaea HOM05D000786 ORTHO05D000779 2.2e-06 56.2 58 50.0
BcaC05g29785 Brassica carinata HOM05D000786 ORTHO05D000779 2.2e-06 56.2 68 41.2
Ciclev10003628m.g Citrus clementina HOM05D000786 ORTHO05D000779 2.2e-06 56.2 43 51.2
CsaV3_1G040610 Cucumis sativus L. HOM05D000786 ORTHO05D000779 2.2e-06 56.2 48 50.0
FAN09G3870 Fragaria x ananassa HOM05D013158 ORTHO05D000779 2.2e-06 56.2 44 52.3
Lj5g0012143 Lotus japonicus HOM05D000786 ORTHO05D000779 2.2e-06 56.2 48 50.0
MBI18_g24950_MAGBIO Magnolia biondii HOM05D000786 ORTHO05D000779 2.2e-06 56.2 43 53.5
Solyc07g040730.1 Solanum lycopersicum HOM05D000786 ORTHO05D000779 2.2e-06 56.2 49 46.9
Sopen07g019470 Solanum pennellii HOM05D000786 ORTHO05D000779 2.2e-06 56.2 49 46.9
PGSC0003DMG400032797 Solanum tuberosum HOM05D000786 ORTHO05D000779 2.2e-06 56.2 49 46.9
vmacro03014 Vaccinium macrocarpon HOM05D000786 ORTHO05D000779 2.2e-06 56.2 43 51.2
Ciclev10022952m.g Citrus clementina HOM05D000786 ORTHO05D000779 2.8e-06 55.8 43 53.5
Cc06_g11610 Coffea canephora HOM05D000786 ORTHO05D000779 2.8e-06 55.8 49 46.9
Glyma.17G053400 Glycine max HOM05D000786 ORTHO05D000779 2.8e-06 55.8 48 50.0
Lalb_Chr12g0199881 Lupinus albus HOM05D000786 ORTHO05D000779 2.8e-06 55.8 49 46.9
Phvul.003G135000 Phaseolus vulgaris HOM05D000786 ORTHO05D000779 2.8e-06 55.8 48 50.0
THA.LOC104817471 Tarenaya hassleriana HOM05D000786 ORTHO05D000779 2.8e-06 55.8 42 54.8
EL10Ac7g16372 Beta vulgaris HOM05D000786 ORTHO05D000779 3.7e-06 55.5 42 57.1
BcaC09g47844 Brassica carinata HOM05D000786 ORTHO05D000779 3.7e-06 55.5 68 42.6
BolC1t05676H Brassica oleracea HOM05D000786 ORTHO05D000779 3.7e-06 55.5 68 42.6
BraA01t04489Z Brassica rapa HOM05D000786 ORTHO05D000779 3.7e-06 55.5 68 42.6
CAN.G862.13 Capsicum annuum HOM05D000786 ORTHO05D000779 3.7e-06 55.5 47 51.1
Ca_01217_v3 Cicer arietinum L. HOM05D000786 ORTHO05D000779 3.7e-06 55.5 66 47.0
Cc08_g11850 Coffea canephora HOM05D000786 ORTHO05D000779 3.7e-06 55.5 43 53.5
Psat7g044080 Pisum sativum HOM05D000786 ORTHO05D000779 3.7e-06 55.5 48 47.9
Potri.003G043600 Populus trichocarpa HOM05D000786 ORTHO05D000779 3.7e-06 55.5 48 47.9
Potri.006G147700 Populus trichocarpa HOM05D000786 ORTHO05D000779 3.7e-06 55.5 48 47.9
Potri.013G010600 Populus trichocarpa HOM05D000786 ORTHO05D000779 3.7e-06 55.5 47 48.9
Prupe.6G315400 Prunus persica HOM05D000786 ORTHO05D000779 3.7e-06 55.5 47 51.1
Atru.chr1.3791 Acer truncatum HOM05D000786 ORTHO05D000779 4.8e-06 55.1 48 50.0
MSTRG.21668 Avicennia marina HOM05D000786 ORTHO05D000779 4.8e-06 55.1 48 50.0
ClCG03G015430 Citrullus lanatus HOM05D000786 ORTHO05D000779 4.8e-06 55.1 48 47.9
ClCG03G017660 Citrullus lanatus HOM05D032089 ORTHO05D000779 4.8e-06 55.1 45 44.4
MELO3C015491.2 Cucumis melo HOM05D000786 ORTHO05D000779 4.8e-06 55.1 48 47.9
FAN14G2240 Fragaria x ananassa HOM05D013158 ORTHO05D000779 4.8e-06 55.1 43 53.5
Glyma.07G007500 Glycine max HOM05D000786 ORTHO05D000779 4.8e-06 55.1 49 55.1
Lj4g0024741 Lotus japonicus HOM05D000786 ORTHO05D000779 4.8e-06 55.1 64 37.5
MD04G1195600 Malus domestica HOM05D000786 ORTHO05D000779 4.8e-06 55.1 47 48.9
MD12G1207900 Malus domestica HOM05D000786 ORTHO05D000779 4.8e-06 55.1 47 48.9
Manes.01G225400 Manihot esculenta HOM05D000786 ORTHO05D000779 4.8e-06 55.1 51 47.1
Manes.09G175200 Manihot esculenta HOM05D000786 ORTHO05D000779 4.8e-06 55.1 44 52.3
HPP92_025190 Vanilla planifolia HOM05D000786 ORTHO05D000779 4.8e-06 55.1 47 51.1
GSVIVG01015175001 Vitis vinifera HOM05D000786 ORTHO05D000779 4.8e-06 55.1 49 53.1
CAN.G57.13 Capsicum annuum HOM05D000786 ORTHO05D000779 6.3e-06 54.7 53 45.3
Cpa.g.sc737.1 Carica papaya HOM05D000786 ORTHO05D000779 6.3e-06 54.7 48 52.1
Ca_21289_v3 Cicer arietinum L. HOM05D000786 ORTHO05D000779 6.3e-06 54.7 48 47.9
Ciclev10009884m.g Citrus clementina HOM05D000786 ORTHO05D000779 6.3e-06 54.7 48 50.0
Thhalv10001686m.g Eutrema salsugineum HOM05D000786 ORTHO05D000779 6.3e-06 54.7 43 46.5
Os07g0690200 Oryza sativa ssp. japonica HOM05D000786 ORTHO05D000779 6.3e-06 54.7 44 52.3
Potri.014G123600 Populus trichocarpa HOM05D000786 ORTHO05D000779 6.3e-06 54.7 75 37.3
PGSC0003DMG400002645 Solanum tuberosum HOM05D000786 ORTHO05D000779 6.3e-06 54.7 58 43.1
TAR365G1099 Trochodendron aralioides HOM05D000786 ORTHO05D000779 6.3e-06 54.7 51 47.1
Zm00001eb285950 Zea mays HOM05D000786 ORTHO05D000779 6.3e-06 54.7 41 61.0
BcaB02g08768 Brassica carinata HOM05D000786 ORTHO05D000779 8.2e-06 54.3 80 33.8
BcaC05g30093 Brassica carinata HOM05D011267 ORTHO05D013190 8.2e-06 54.3 71 39.4
BolC2t09070H Brassica oleracea HOM05D000786 ORTHO05D000779 8.2e-06 54.3 66 37.9
Cfa003058 Carpinus fangiana HOM05D000786 ORTHO05D000779 8.2e-06 54.3 48 50.0
CiPaw.03G212600 Carya illinoinensis HOM05D000786 ORTHO05D000779 8.2e-06 54.3 49 53.1
CsaV3_4G035780 Cucumis sativus L. HOM05D000786 ORTHO05D000779 8.2e-06 54.3 49 49.0
Glyma.03G232300 Glycine max HOM05D000786 ORTHO05D000779 8.2e-06 54.3 53 43.4
Psat5g095920 Pisum sativum HOM05D000786 ORTHO05D000779 8.2e-06 54.3 50 50.0
QL05p009684 Quercus lobata HOM05D000786 ORTHO05D000779 8.2e-06 54.3 51 51.0


User provided reference genes

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