Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G01924 Striga asiatica HOM05D005165 ORTHO05D006361 0.0e+00 2403.6 1354 100.0
Migut.M01303 Erythranthe guttata HOM05D005165 ORTHO05D006361 0.0e+00 1718.7 1363 73.4
Oeu063907.1 Olea europaea HOM05D005165 ORTHO05D006361 0.0e+00 1417.1 1433 59.9
Dinv13878 Davidia involucrata HOM05D005165 ORTHO05D006361 0.0e+00 1340.1 1530 54.5
Cc09_g01850 Coffea canephora HOM05D005165 ORTHO05D006361 0.0e+00 1335.9 1391 59.6
MSTRG.15978 Avicennia marina HOM05D005165 ORTHO05D006361 0.0e+00 1313.1 942 72.5
Lj2C270G14 Lonicera japonica HOM05D005165 ORTHO05D006361 0.0e+00 1302.0 1387 55.9
Nitab4.5_0007482g0050 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1262.7 1381 56.3
CSS0001066 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1245.7 1531 51.5
vmacro03694 Vaccinium macrocarpon HOM05D005165 ORTHO05D006361 0.0e+00 1244.6 1422 51.8
Cfa000241 Carpinus fangiana HOM05D005165 ORTHO05D006361 0.0e+00 1236.9 1428 52.4
Sopen02g025090 Solanum pennellii HOM05D005165 ORTHO05D006361 0.0e+00 1222.6 1532 52.0
unitig_748.g7100 Utricularia gibba HOM05D005165 ORTHO05D006361 0.0e+00 1220.3 1351 54.8
Thecc.06G218200 Theobroma cacao HOM05D005165 ORTHO05D006361 0.0e+00 1188.3 1445 53.5
Ciclev10014034m.g Citrus clementina HOM05D005165 ORTHO05D006361 0.0e+00 1183.3 1399 50.5
Nitab4.5_0003254g0110 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1179.9 1502 52.3
QL05p073800 Quercus lobata HOM05D005165 ORTHO05D006361 0.0e+00 1178.7 1510 48.5
TAR627G0931 Trochodendron aralioides HOM05D005165 ORTHO05D006361 0.0e+00 1175.2 1380 54.1
Duzib235G1549 Durio zibethinus HOM05D005165 ORTHO05D006361 0.0e+00 1173.3 1412 52.9
Manes.17G037700 Manihot esculenta HOM05D005165 ORTHO05D006361 0.0e+00 1172.1 1385 53.9
Rhsim13G0155600 Rhododendron simsii HOM05D005165 ORTHO05D006361 0.0e+00 1156.0 1404 53.1
Prupe.4G023200 Prunus persica HOM05D005165 ORTHO05D006361 0.0e+00 1149.8 1390 52.4
Nn1g03565 Nelumbo nucifera HOM05D005165 ORTHO05D006361 0.0e+00 1142.5 1374 48.5
Haze_06780 Corylus avellana HOM05D005165 ORTHO05D006361 0.0e+00 1142.1 1464 49.3
CsaV3_1G010870 Cucumis sativus L. HOM05D005165 ORTHO05D006361 0.0e+00 1140.9 1367 52.7
CANSAT56G1527 Cannabis sativa HOM05D005165 ORTHO05D006361 0.0e+00 1128.2 1487 48.4
Sabra04G0009600 Salix brachista HOM05D005165 ORTHO05D006361 0.0e+00 1127.9 1526 48.8
ClCG03G004830 Citrullus lanatus HOM05D005165 ORTHO05D006361 0.0e+00 1126.3 1374 52.2
Potri.004G017500 Populus trichocarpa HOM05D005165 ORTHO05D006361 0.0e+00 1124.0 1518 46.2
Peaxi162Scf00262g00611 Petunia axillaris HOM05D005165 ORTHO05D006361 0.0e+00 1122.8 1474 50.9
COL.COLO4_31753 Corchorus olitorius HOM05D005165 ORTHO05D006361 0.0e+00 1113.2 1367 51.3
Aqoxy1G03259 Aquilegia oxysepala HOM05D005165 ORTHO05D006361 0.0e+00 1107.4 1399 50.2
PGR004G2872 Punica granatum HOM05D005165 ORTHO05D006361 0.0e+00 1101.3 1360 54.2
Hund23483 Selenicereus undatus HOM05D005165 ORTHO05D006361 0.0e+00 1100.9 1373 48.4
Lalb_Chr01g0014921 Lupinus albus HOM05D005165 ORTHO05D006361 0.0e+00 1099.3 1452 48.7
Sed0027912 Sechium edule HOM05D005165 ORTHO05D006361 0.0e+00 1095.1 1360 50.7
Lj4g0017916 Lotus japonicus HOM05D005165 ORTHO05D006361 0.0e+00 1092.8 1393 49.8
TWI63G0677 Tripterygium wilfordii HOM05D005165 ORTHO05D006361 0.0e+00 1092.4 1547 46.2
HanXRQChr05g0129591 Helianthus annuus HOM05D005165 ORTHO05D006361 0.0e+00 1087.8 1435 49.6
Gorai.010G179700 Gossypium raimondii HOM05D005165 ORTHO05D006361 0.0e+00 1086.6 1379 48.9
arahy.Tifrunner.gnm1.ann1.K6JFDD Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1085.1 1500 46.5
arahy.Tifrunner.gnm1.ann1.FU33AK Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1080.1 1501 46.0
Glyma.17G014900 Glycine max HOM05D005165 ORTHO05D006361 0.0e+00 1078.5 1559 46.8
DCAR_004209 Daucus carota HOM05D005165 ORTHO05D006361 6.5e-311 1071.2 1396 48.1
FvH4_3g02340 Fragaria vesca HOM05D005165 ORTHO05D006361 6.5e-311 1071.2 1394 51.4
PSO541G6479 Papaver somniferum HOM05D005165 ORTHO05D006361 5.4e-310 1068.1 1407 52.4
Ca_21091_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 9.2e-310 1067.4 1395 45.3
Ca_30199_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 1.6e-309 1066.6 1396 45.3
RcHm_v2.0_Chr5g0003561 Rosa chinensis HOM05D005165 ORTHO05D006361 2.0e-309 1066.2 1466 48.0
PSO675G7058 Papaver somniferum HOM05D005165 ORTHO05D006361 2.7e-309 1065.8 1407 52.0
Gohir.D06G153700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 4.5e-309 1065.1 1379 46.4
MD10G1319300 Malus domestica HOM05D005165 ORTHO05D006361 1.7e-308 1063.1 1466 47.2
Medtr4g131940 Medicago truncatula HOM05D005165 ORTHO05D006361 3.8e-308 1062.0 1511 45.9
CSS0020297 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 4.7e-306 1055.0 1398 47.1
Phvul.003G077600 Phaseolus vulgaris HOM05D005165 ORTHO05D006361 2.3e-305 1052.7 1549 44.4
arahy.Tifrunner.gnm1.ann1.QZ1TNI Arachis hypogaea HOM05D005165 ORTHO05D006361 1.2e-304 1050.4 1528 43.0
BcaNung02250 Brassica carinata HOM05D005165 ORTHO05D006361 1.7e-303 1046.6 1384 48.2
BcaC09g51197 Brassica carinata HOM05D005165 ORTHO05D006361 2.9e-303 1045.8 1390 47.0
Carub.0007s1958 Capsella rubella HOM05D005165 ORTHO05D006361 1.4e-302 1043.5 1377 48.5
Psat4g007280 Pisum sativum HOM05D005165 ORTHO05D006361 7.0e-302 1041.2 1507 46.1
Solyc02g080390.2 Solanum lycopersicum HOM05D005165 ORTHO05D006361 1.6e-301 1040.0 1380 50.4
MBI02_g22104_MAGBIO Magnolia biondii HOM05D005165 ORTHO05D006361 8.6e-300 1034.2 1472 45.2
A01p13150 Brassica napus HOM05D005165 ORTHO05D006361 1.1e-299 1033.9 1379 50.3
AT4G21820 Arabidopsis thaliana HOM05D005165 ORTHO05D006361 1.5e-299 1033.5 1384 47.0
C01p15840 Brassica napus HOM05D005165 ORTHO05D006361 5.6e-299 1031.6 1416 46.1
Sp7g19990 Schrenkiella parvula HOM05D005165 ORTHO05D006361 1.6e-298 1030.0 1384 45.9
Sc17g0007260 Simmondsia chinensis HOM05D005165 ORTHO05D006361 2.1e-298 1029.6 1367 50.9
BolC1t01538H Brassica oleracea HOM05D005165 ORTHO05D006361 3.7e-295 1018.8 1409 45.9
BraA01t01259Z Brassica rapa HOM05D005165 ORTHO05D006361 1.2e-293 1013.8 1400 49.0
ECA236G1313 Erigeron canadensis HOM05D005165 ORTHO05D006361 4.6e-293 1011.9 1357 51.1
TPR.G37081 Trifolium pratense HOM05D005165 ORTHO05D006361 3.9e-292 1008.8 1589 43.5
THA.LOC104813036 Tarenaya hassleriana HOM05D005165 ORTHO05D006361 3.3e-291 1005.7 1479 48.6
Gohir.D10G013600 Gossypium hirsutum HOM05D005165 ORTHO05D006361 2.0e-288 996.5 1797 40.5
GSVIVG01002377001 Vitis vinifera HOM05D005165 ORTHO05D006361 4.4e-288 995.3 922 58.0
MELO3C002466.2 Cucumis melo HOM05D005165 ORTHO05D006361 1.9e-286 989.9 1445 47.3
Glyma.07G259400 Glycine max HOM05D005165 ORTHO05D006361 1.0e-284 984.2 1556 44.7
Thhalv10024235m.g Eutrema salsugineum HOM05D005165 ORTHO05D006361 9.5e-283 977.6 1373 46.3
CARHR228530 Cardamine hirsuta HOM05D005165 ORTHO05D006361 1.8e-281 973.4 1381 44.7
AUR62021974 Chenopodium quinoa HOM05D005165 ORTHO05D006361 4.1e-278 962.2 1370 49.1
AUR62012682 Chenopodium quinoa HOM05D005165 ORTHO05D006361 7.1e-278 961.4 1372 49.1
FAN21G3214 Fragaria x ananassa HOM05D005165 ORTHO05D006361 2.6e-272 943.0 1363 49.1
Atru.chr10.2199 Acer truncatum HOM05D005165 ORTHO05D006361 3.4e-264 916.0 1475 42.4
Aa31LG6G3830 Aethionema arabicum HOM05D005165 ORTHO05D006361 2.9e-263 912.9 1430 43.1
FAN25G1001 Fragaria x ananassa HOM05D005165 ORTHO05D006361 3.2e-262 909.4 1452 46.4
CiPaw.09G089900 Carya illinoinensis HOM05D005165 ORTHO05D006361 6.4e-255 885.2 766 61.1
Gohir.A06G147800 Gossypium hirsutum HOM05D005165 ORTHO05D006361 2.3e-252 876.7 862 55.3
AL7G32110 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 1.6e-250 870.5 1220 46.1
EL10Ac8g20027 Beta vulgaris HOM05D005165 ORTHO05D006361 3.7e-250 869.4 1406 44.5
Actinidia05522 Actinidia chinensis HOM05D005165 ORTHO05D006361 6.5e-231 805.4 1292 43.9
Ah.09g235020 Amaranthus hybridus HOM05D005165 ORTHO05D006361 1.3e-226 791.2 1381 43.2
Lsat_1_v5_gn_7_17620 Lactuca sativa HOM05D005165 ORTHO05D006361 1.3e-223 781.2 789 54.2
CSS0012929 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 2.4e-217 760.4 1297 42.6
CDE05G2160 Ceratophyllum demersum HOM05D005165 ORTHO05D006361 5.5e-198 696.0 1351 34.9
VMungo1215G1456 Vigna mungo HOM05D005165 ORTHO05D000002 2.3e-196 690.6 2356 30.3
Eucgr.D01308 Eucalyptus grandis HOM05D005165 ORTHO05D006361 2.3e-191 674.1 1139 39.4
ATR0752G018 Amborella trichopoda HOM05D005165 ORTHO05D006361 8.9e-172 609.0 717 48.0
Cpa.g.sc198.36 Carica papaya HOM05D005165 ORTHO05D006361 5.4e-169 599.7 541 59.5
Gorai.011G015400 Gossypium raimondii HOM05D005165 ORTHO05D006361 1.1e-164 585.5 1328 35.0
Zm00001eb322760 Zea mays HOM05D005165 ORTHO05D006361 8.9e-164 582.4 1454 32.0
HPP92_012319 Vanilla planifolia HOM05D005165 ORTHO05D006361 2.1e-152 544.7 868 39.7
Cpa.g.sc198.37 Carica papaya HOM05D005165 ORTHO05D006361 1.3e-146 525.4 829 44.8
Gohir.A10G013700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 7.9e-136 489.6 1180 37.6
HPP92_012397 Vanilla planifolia HOM05D005165 ORTHO05D006361 3.2e-129 467.6 1369 30.5
QL05p073557 Quercus lobata HOM05D005165 ORTHO05D006361 4.3e-126 457.2 430 58.8
CSS0017164 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.7e-114 418.7 554 44.4
MSTRG.15979 Avicennia marina HOM05D005165 ORTHO05D006361 4.4e-110 404.1 298 78.2
SEGI_37992 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 2.8e-101 374.8 531 39.5
AagrBONN_evm.TU.Sc2ySwM_117.1637__1638 Anthoceros agrestis HOM05D005165 ORTHO05D006361 6.3e-101 373.6 1447 26.7
Mapoly0043s0047 Marchantia polymorpha HOM05D005165 ORTHO05D006361 5.3e-100 370.5 755 33.8
Pp3c24_1350 Physcomitrium patens HOM05D005165 ORTHO05D006361 2.7e-88 331.6 1539 29.5
GSVIVG01004517001 Vitis vinifera HOM05D005165 ORTHO05D006361 6.3e-85 320.5 303 62.0
CiPaw.09G090000 Carya illinoinensis HOM05D005165 ORTHO05D006361 1.3e-82 312.8 458 51.5
SEGI_21682 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 2.1e-80 305.4 290 49.0
SMO200G0122 Selaginella moellendorffii HOM05D005165 ORTHO05D006361 4.4e-78 297.7 1475 27.3
FAN21G2432 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.2e-75 289.7 285 61.8
Lsat_1_v5_gn_7_17640 Lactuca sativa HOM05D005165 ORTHO05D006361 7.0e-68 263.8 299 48.8
PGSC0003DMG400016486 Solanum tuberosum HOM05D005165 ORTHO05D006361 2.3e-66 258.8 245 59.6
CSS0021361 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 2.2e-61 242.3 240 55.8
SGA_v2.0_scaffold186G40236 Striga asiatica HOM05D005165 ORTHO05D006361 4.3e-57 228.0 155 81.3
GSVIVG01002955001 Vitis vinifera HOM05D005165 ORTHO05D006361 1.9e-49 202.6 152 70.4
SEGI_30095 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 4.7e-48 198.0 755 25.8
SEGI_17063 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 4.1e-44 184.9 303 39.6
Solyc02g080400.3 Solanum lycopersicum HOM05D005165 ORTHO05D006361 3.5e-43 181.8 153 64.1
ATR0752G007 Amborella trichopoda HOM05D005165 ORTHO05D006361 6.0e-43 181.0 201 57.7
CAN.G569.18 Capsicum annuum HOM05D005165 ORTHO05D006361 3.0e-42 178.7 126 72.2
SEGI_19133 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 8.7e-42 177.2 232 40.1
CBR_g12408 Chara braunii HOM05D000019 ORTHO05D000048 7.8e-35 154.1 731 24.5
PRCOL_00000773 Prasinoderma coloniale HOM05D005165 ORTHO05D006361 1.3e-32 146.7 404 27.2
HPP92_012318 Vanilla planifolia HOM05D005165 ORTHO05D006361 9.9e-30 137.1 208 43.3
SHI14112 Sapria himalayana HOM05D005165 ORTHO05D006361 9.0e-23 114.0 100 56.0
MCO03G113 Micromonas commoda HOM05D005165 ORTHO05D006361 1.2e-22 113.6 366 26.5
SHI34979 Sapria himalayana HOM05D005165 ORTHO05D006361 5.8e-22 111.3 181 39.2
SEGI_29404 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 2.2e-21 109.4 670 23.7
AL7G32100 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 8.7e-18 97.4 100 48.0
HanXRQChr07g0198521 Helianthus annuus HOM05D005165 ORTHO05D006361 1.3e-16 93.6 71 60.6
Cre06.g281200 Chlamydomonas reinhardtii HOM05D005165 ORTHO05D006361 5.3e-15 88.2 241 28.2
FAN25G2437 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.6e-11 76.6 67 61.2
CiPaw.02G155600 Carya illinoinensis HOM05D005165 ORTHO05D006361 2.7e-11 75.9 73 56.2
Cfa022813 Carpinus fangiana HOM05D005165 ORTHO05D006361 2.3e-10 72.8 342 26.3
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 1.2e-06 60.5 68 45.6
RcHm_v2.0_Chr6g0271351 Rosa chinensis HOM05D005165 ORTHO05D006361 2.0e-06 59.7 55 45.5
RcHm_v2.0_Chr5g0054711 Rosa chinensis HOM05D005165 ORTHO05D006361 4.5e-06 58.5 48 50.0
SHI35683 Sapria himalayana HOM05D000558 ORTHO05D001857 5.9e-06 58.2 147 29.9


User provided reference genes

Program Settings