Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 1.8e-70 269.2 143 100.0
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 2.2e-60 235.7 143 88.1
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 5.9e-58 227.6 143 83.2
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 7.7e-58 227.3 143 83.9
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.7e-57 226.1 143 83.2
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 2.2e-57 225.7 143 83.2
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 3.8e-57 224.9 143 82.5
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 6.5e-57 224.2 143 82.5
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 8.5e-57 223.8 143 85.3
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 3.2e-56 221.9 143 82.5
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 4.2e-56 221.5 143 81.8
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 7.2e-56 220.7 143 81.8
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 9.4e-56 220.3 143 81.8
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 9.4e-56 220.3 143 81.1
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 9.4e-56 220.3 143 81.1
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 1.6e-55 219.5 143 81.1
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.6e-55 219.5 143 81.1
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 2.7e-55 218.8 143 81.1
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 2.7e-55 218.8 143 80.4
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 6.1e-55 217.6 143 79.7
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 8.0e-55 217.2 143 80.4
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.0e-54 216.9 143 79.7
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 1.0e-54 216.9 144 81.2
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 1.0e-54 216.9 143 81.1
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 1.4e-54 216.5 143 79.7
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.8e-54 216.1 143 79.7
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.8e-54 216.1 143 79.7
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 1.8e-54 216.1 143 79.7
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 3.0e-54 215.3 143 78.3
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 4.0e-54 214.9 143 79.7
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 5.2e-54 214.5 143 79.7
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 6.7e-54 214.2 143 80.4
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 6.7e-54 214.2 147 78.2
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 6.7e-54 214.2 143 79.0
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 1.2e-53 213.4 143 76.9
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 1.5e-53 213.0 143 79.7
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 2.0e-53 212.6 143 79.0
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 2.0e-53 212.6 143 79.0
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 2.6e-53 212.2 143 76.9
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 3.3e-53 211.8 142 80.3
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 3.3e-53 211.8 143 77.6
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 4.4e-53 211.5 143 79.0
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 5.7e-53 211.1 143 79.0
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 5.7e-53 211.1 143 77.6
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 1.3e-52 209.9 143 77.6
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 1.3e-52 209.9 143 77.6
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 1.7e-52 209.5 143 76.9
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 1.7e-52 209.5 143 76.2
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 2.2e-52 209.1 143 77.6
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.8e-52 208.8 143 76.9
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 2.8e-52 208.8 164 72.0
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 2.8e-52 208.8 142 77.5
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 3.7e-52 208.4 143 77.6
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 4.8e-52 208.0 143 76.9
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 4.8e-52 208.0 143 77.6
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 4.8e-52 208.0 143 76.9
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 4.8e-52 208.0 143 76.9
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 4.8e-52 208.0 143 75.5
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 6.3e-52 207.6 143 76.9
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 6.3e-52 207.6 143 76.9
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 6.3e-52 207.6 142 77.5
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 6.3e-52 207.6 143 77.6
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 8.2e-52 207.2 143 75.5
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 1.1e-51 206.8 143 74.8
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 1.1e-51 206.8 143 76.2
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 1.8e-51 206.1 143 76.2
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 1.8e-51 206.1 149 74.5
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 2.4e-51 205.7 142 77.5
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 2.4e-51 205.7 142 76.8
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 3.1e-51 205.3 143 76.9
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 7.0e-51 204.1 143 76.2
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 1.2e-50 203.4 143 74.8
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 1.2e-50 203.4 142 75.4
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 1.2e-50 203.4 143 76.2
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 1.2e-50 203.4 143 76.9
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 2.7e-50 202.2 160 68.8
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 5.9e-50 201.1 143 75.5
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 5.9e-50 201.1 143 75.5
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 7.7e-50 200.7 151 72.8
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 7.7e-50 200.7 151 72.8
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 1.0e-49 200.3 143 73.4
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 1.0e-49 200.3 143 75.5
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.7e-49 199.5 143 72.7
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 1.7e-49 199.5 142 73.9
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 3.8e-49 198.4 143 75.5
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 3.8e-49 198.4 142 73.2
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 5.0e-49 198.0 148 72.3
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 8.5e-49 197.2 152 72.4
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 1.9e-48 196.1 155 71.0
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 1.9e-48 196.1 155 71.0
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.9e-48 196.1 143 74.8
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 2.5e-48 195.7 143 74.8
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 4.2e-48 194.9 143 72.7
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 1.2e-47 193.4 143 72.7
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 2.7e-47 192.2 177 63.3
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 6.1e-47 191.0 157 67.5
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.0e-46 190.3 147 68.7
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 3.0e-46 188.7 143 71.3
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 3.0e-46 188.7 146 67.1
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 4.0e-46 188.3 139 73.4
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 4.0e-46 188.3 143 72.0
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 5.2e-46 188.0 147 67.3
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 1.5e-45 186.4 168 63.1
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 5.7e-45 184.5 176 60.2
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 1.3e-44 183.3 148 65.5
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 9.1e-43 177.2 117 81.2
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 9.1e-43 177.2 141 65.2
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 1.2e-42 176.8 139 71.2
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 2.7e-42 175.6 141 68.8
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 7.7e-42 174.1 117 79.5
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 1.3e-41 173.3 121 77.7
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 2.3e-41 172.6 143 63.6
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 9.5e-40 167.2 171 55.0
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 1.6e-39 166.4 119 74.8
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 3.4e-37 158.7 117 74.4
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 9.8e-37 157.1 132 70.5
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 4.9e-36 154.8 120 70.8
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 4.9e-36 154.8 143 56.6
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 8.3e-36 154.1 139 62.6
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 1.4e-35 153.3 117 72.6
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 3.1e-35 152.1 143 58.0
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 7.0e-35 151.0 139 63.3
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 2.9e-33 145.6 113 71.7
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 3.8e-33 145.2 141 55.3
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 1.1e-32 143.7 131 61.8
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 2.5e-32 142.5 167 52.1
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 7.3e-32 141.0 100 73.0
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 3.4e-29 132.1 123 61.8
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 1.3e-28 130.2 155 51.6
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 2.9e-28 129.0 119 63.0
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 6.4e-28 127.9 81 82.7
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 1.8e-27 126.3 142 53.5
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 5.4e-27 124.8 80 81.2
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.0e-26 122.9 80 80.0
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.7e-26 122.5 80 80.0
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 6.0e-26 121.3 138 51.4
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 7.8e-26 120.9 141 50.4
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 3.9e-25 118.6 77 80.5
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 8.6e-25 117.5 76 81.6
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 1.1e-24 117.1 69 87.0
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 4.3e-24 115.2 89 68.5
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 1.6e-23 113.2 69 82.6
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 3.6e-23 112.1 136 50.7
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 6.2e-23 111.3 89 66.3
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.6e-18 96.7 62 79.0
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 6.0e-18 94.7 74 66.2
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 2.3e-17 92.8 54 85.2
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 3.9e-17 92.0 69 72.5
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 3.3e-16 89.0 77 59.7
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 5.6e-16 88.2 105 52.4
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 1.6e-15 86.7 74 63.5
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 3.6e-15 85.5 57 77.2
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 2.0e-13 79.7 72 59.7
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 2.0e-13 79.7 72 59.7
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 2.4e-11 72.8 132 36.4
A06p38190 Brassica napus HOM05D004301 ORTHO05D005124 1.5e-08 63.5 110 42.7
BraA06t26734Z Brassica rapa HOM05D004301 ORTHO05D005124 1.5e-08 63.5 110 42.7
C05p45830 Brassica napus HOM05D004301 ORTHO05D005124 2.1e-07 59.7 40 72.5
C05p45820 Brassica napus HOM05D004301 ORTHO05D005124 2.8e-07 59.3 42 69.0
A07p00860 Brassica napus HOM05D004301 ORTHO05D005124 4.7e-07 58.5 37 75.7
BolC5t33302H Brassica oleracea HOM05D004301 ORTHO05D005124 4.7e-07 58.5 42 69.0
BraA07t27884Z Brassica rapa HOM05D004301 ORTHO05D005124 4.7e-07 58.5 37 75.7
BcaB02g10679 Brassica carinata HOM05D004301 ORTHO05D005124 5.2e-06 55.1 112 38.4


User provided reference genes

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