Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 1.7e-52 209.1 111 100.0
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 4.9e-28 127.9 103 68.0
SalBow8G4932 Salvia bowleyana HOM05D005226 ORTHO05D004666 7.6e-21 104.0 100 63.0
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 2.5e-19 99.0 110 55.5
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 2.7e-18 95.5 111 49.5
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 4.6e-18 94.7 110 50.0
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 1.0e-17 93.6 110 51.8
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 1.8e-17 92.8 109 54.1
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 1.8e-17 92.8 110 50.9
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 6.7e-17 90.9 111 46.8
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 2.5e-16 89.0 107 54.2
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 2.5e-16 89.0 97 52.6
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 9.7e-16 87.0 103 52.4
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 1.3e-15 86.7 110 45.5
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 1.6e-15 86.3 111 47.7
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.6e-15 86.3 107 49.5
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 2.2e-15 85.9 111 45.0
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 2.2e-15 85.9 111 45.9
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 3.7e-15 85.1 106 44.3
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.7e-15 85.1 108 45.4
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 3.7e-15 85.1 110 48.2
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 3.7e-15 85.1 110 48.2
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 8.2e-15 84.0 103 44.7
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 8.2e-15 84.0 84 58.3
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 8.2e-15 84.0 84 58.3
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.1e-14 83.6 98 44.9
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 1.1e-14 83.6 98 44.9
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 1.1e-14 83.6 107 46.7
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 1.4e-14 83.2 103 44.7
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 1.4e-14 83.2 103 51.5
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 1.8e-14 82.8 110 46.4
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 1.8e-14 82.8 107 44.9
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 2.4e-14 82.4 95 48.4
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 4.1e-14 81.6 112 46.4
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 4.1e-14 81.6 110 46.4
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 4.1e-14 81.6 95 47.4
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 5.3e-14 81.3 110 43.6
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 5.3e-14 81.3 111 42.3
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 5.3e-14 81.3 109 43.1
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 6.9e-14 80.9 110 46.4
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 6.9e-14 80.9 110 46.4
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 9.0e-14 80.5 109 48.6
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 9.0e-14 80.5 96 46.9
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 9.0e-14 80.5 97 45.4
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 9.0e-14 80.5 98 43.9
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 9.0e-14 80.5 97 44.3
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 9.0e-14 80.5 97 44.3
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 9.0e-14 80.5 102 51.0
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 9.0e-14 80.5 97 49.5
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.2e-13 80.1 108 43.5
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 1.5e-13 79.7 87 58.6
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 1.5e-13 79.7 95 48.4
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 1.5e-13 79.7 104 42.3
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 1.5e-13 79.7 103 43.7
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 2.6e-13 79.0 102 45.1
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 2.6e-13 79.0 95 48.4
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 2.6e-13 79.0 111 41.4
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 4.5e-13 78.2 109 45.9
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 4.5e-13 78.2 109 39.4
CsaV3_1G010830 Cucumis sativus L. HOM05D005226 ORTHO05D004666 5.9e-13 77.8 104 42.3
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 5.9e-13 77.8 111 40.5
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 7.6e-13 77.4 109 40.4
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 7.6e-13 77.4 88 56.8
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 2.9e-12 75.5 104 40.4
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 2.9e-12 75.5 107 38.3
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 3.8e-12 75.1 109 40.4
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 3.8e-12 75.1 112 42.0
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 5.0e-12 74.7 104 47.1
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 5.0e-12 74.7 104 47.1
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 8.5e-12 73.9 78 56.4
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 8.5e-12 73.9 100 47.0
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 1.1e-11 73.6 95 46.3
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 1.1e-11 73.6 95 44.2
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 1.4e-11 73.2 86 46.5
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 1.4e-11 73.2 86 46.5
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 1.9e-11 72.8 92 45.7
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 1.9e-11 72.8 74 55.4
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.9e-11 72.8 89 50.6
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 1.9e-11 72.8 91 46.2
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 2.5e-11 72.4 115 41.7
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.5e-11 72.4 102 43.1
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 3.2e-11 72.0 100 47.0
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.2e-11 72.0 102 43.1
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 4.2e-11 71.6 78 47.4
Rhsim02G0109000 Rhododendron simsii HOM05D005226 ORTHO05D004666 7.2e-11 70.9 73 57.5
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 9.4e-11 70.5 67 59.7
TPR.G21187 Trifolium pratense HOM05D005226 ORTHO05D004666 9.4e-11 70.5 69 56.5
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 1.2e-10 70.1 70 57.1
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 1.2e-10 70.1 106 40.6
Medtr3g463740 Medicago truncatula HOM05D005226 ORTHO05D004666 1.6e-10 69.7 70 57.1
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 1.6e-10 69.7 95 44.2
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.1e-10 69.3 102 41.2
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 2.1e-10 69.3 91 44.0
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 2.1e-10 69.3 101 45.5
unitig_26.g9388 Utricularia gibba HOM05D005226 ORTHO05D004666 2.1e-10 69.3 93 47.3
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 2.7e-10 68.9 107 38.3
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 2.7e-10 68.9 94 48.9
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 3.6e-10 68.6 105 38.1
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 3.6e-10 68.6 97 42.3
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 6.1e-10 67.8 72 54.2
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 6.1e-10 67.8 109 34.9
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 7.9e-10 67.4 96 42.7
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 1.8e-09 66.2 96 42.7
ATR0752G088 Amborella trichopoda HOM05D005226 ORTHO05D004666 3.0e-09 65.5 107 40.2
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.0e-09 65.5 97 41.2
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 3.9e-09 65.1 80 50.0
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 6.7e-09 64.3 74 51.4
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 6.7e-09 64.3 100 40.0
Peaxi162Scf00565g00036 Petunia axillaris HOM05D005226 ORTHO05D004666 6.7e-09 64.3 82 52.4
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 8.8e-09 63.9 101 42.6
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 8.8e-09 63.9 97 41.2
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 1.9e-08 62.8 75 49.3
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 1.9e-08 62.8 75 49.3
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 3.3e-08 62.0 75 49.3
CARHR228690 Cardamine hirsuta HOM05D009543 ORTHO05D004666 3.3e-08 62.0 117 35.0
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 4.3e-08 61.6 76 44.7
unitig_749.g13630 Utricularia gibba HOM05D005226 ORTHO05D004666 4.3e-08 61.6 91 46.2
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 5.7e-08 61.2 75 49.3
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 7.4e-08 60.8 68 50.0
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 1.3e-07 60.1 65 52.3
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 2.2e-07 59.3 74 48.6
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 2.2e-07 59.3 75 48.0
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 2.2e-07 59.3 75 48.0
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 1.1e-06 57.0 74 47.3
Aa31LG1G3110 Aethionema arabicum HOM05D005226 ORTHO05D004666 1.4e-06 56.6 71 42.3
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 1.8e-06 56.2 114 36.8
BraA01t01269Z Brassica rapa HOM05D009543 ORTHO05D004666 2.4e-06 55.8 117 31.6
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 2.4e-06 55.8 121 33.1
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 3.1e-06 55.5 75 46.7
BcaB03g13244 Brassica carinata HOM05D005226 ORTHO05D004666 4.1e-06 55.1 77 40.3
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 4.1e-06 55.1 76 46.1
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 4.1e-06 55.1 75 44.0
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 4.1e-06 55.1 76 46.1
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 5.3e-06 54.7 117 31.6
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 5.3e-06 54.7 117 31.6
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 5.3e-06 54.7 117 31.6
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 6.9e-06 54.3 75 42.7
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 6.9e-06 54.3 75 42.7


User provided reference genes

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