Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G01909 Striga asiatica HOM05D004937 ORTHO05D006414 7.2e-162 573.9 309 100.0
MSTRG.15996 Avicennia marina HOM05D004937 ORTHO05D006414 2.5e-53 213.4 271 55.7
Migut.M01330 Erythranthe guttata HOM05D004937 ORTHO05D000904 2.0e-50 203.8 277 53.1
SalBow8G2768 Salvia bowleyana HOM05D004937 ORTHO05D006414 1.8e-43 180.6 270 48.9
Solyc02g032870.4 Solanum lycopersicum HOM05D004937 ORTHO05D006414 1.7e-33 147.5 281 43.8
Nitab4.5_0011734g0010 Nicotiana tabacum HOM05D004937 ORTHO05D006414 2.9e-33 146.7 271 44.3
Cc09_g01540 Coffea canephora HOM05D004937 ORTHO05D000904 6.4e-33 145.6 266 42.5
PGSC0003DMG400019871 Solanum tuberosum HOM05D004937 ORTHO05D006414 1.4e-32 144.4 254 43.7
Nitab4.5_0000005g0300 Nicotiana tabacum HOM05D004937 ORTHO05D006414 1.2e-31 141.4 277 42.2
Peaxi162Scf00394g00019 Petunia axillaris HOM05D004937 ORTHO05D006414 1.2e-31 141.4 257 45.9
Sopen02g011270 Solanum pennellii HOM05D004937 ORTHO05D006414 2.0e-31 140.6 258 45.3
Peaxi162Scf00307g01425 Petunia axillaris HOM05D004937 ORTHO05D006414 3.0e-30 136.7 257 45.5
CSS0033735 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 2.5e-29 133.7 261 41.8
Lj1A1232T94 Lonicera japonica HOM05D004937 ORTHO05D006414 3.3e-29 133.3 287 38.7
Dinv13904 Davidia involucrata HOM05D004937 ORTHO05D006414 1.6e-28 131.0 248 41.9
Rhsim02G0106300 Rhododendron simsii HOM05D004937 ORTHO05D006414 2.8e-28 130.2 260 41.9
GSVIVG01012711001 Vitis vinifera HOM05D004937 ORTHO05D000904 6.2e-28 129.0 261 41.4
Nn1g07169 Nelumbo nucifera HOM05D004937 ORTHO05D006414 1.1e-27 128.3 256 39.5
vmacro15793 Vaccinium macrocarpon HOM05D004937 ORTHO05D006414 6.8e-27 125.6 254 41.3
Gohir.D06G214000 Gossypium hirsutum HOM05D004937 ORTHO05D006414 1.2e-26 124.8 257 39.7
Gorai.010G252100 Gossypium raimondii HOM05D004937 ORTHO05D006414 1.2e-26 124.8 257 39.7
COL.COLO4_31792 Corchorus olitorius HOM05D004937 ORTHO05D006414 2.6e-26 123.6 258 40.7
DCAR_024931 Daucus carota HOM05D004937 ORTHO05D006414 2.6e-26 123.6 266 38.7
Eucgr.D01342 Eucalyptus grandis HOM05D004937 ORTHO05D006414 2.6e-26 123.6 254 38.6
TWI63G0901 Tripterygium wilfordii HOM05D004937 ORTHO05D006414 3.4e-26 123.2 251 40.6
Gohir.A06G207300 Gossypium hirsutum HOM05D004937 ORTHO05D006414 5.8e-26 122.5 258 40.3
Manes.16G005800 Manihot esculenta HOM05D004937 ORTHO05D006414 1.3e-25 121.3 257 39.3
PGR042G1615 Punica granatum HOM05D004937 ORTHO05D006414 1.3e-25 121.3 287 39.4
Thecc.06G222700 Theobroma cacao HOM05D004937 ORTHO05D006414 1.3e-25 121.3 259 39.8
CiPaw.09G093200 Carya illinoinensis HOM05D004937 ORTHO05D006414 2.2e-25 120.6 257 40.5
QL05p072835 Quercus lobata HOM05D004937 ORTHO05D006414 2.2e-25 120.6 255 38.8
Glyma.07G261700 Glycine max HOM05D004937 ORTHO05D006414 3.7e-25 119.8 272 36.4
HanXRQChr15g0470651 Helianthus annuus HOM05D004937 ORTHO05D006414 1.9e-24 117.5 265 36.2
Sc24g0000210 Simmondsia chinensis HOM05D004937 ORTHO05D006414 3.2e-24 116.7 272 35.7
Haze_06813 Corylus avellana HOM05D004937 ORTHO05D006414 4.1e-24 116.3 254 37.0
unitig_748.g7590 Utricularia gibba HOM05D004937 ORTHO05D006414 5.4e-24 115.9 254 35.4
CANSAT56G3877 Cannabis sativa HOM05D004937 ORTHO05D006414 1.6e-23 114.4 258 37.2
Lsat_1_v5_gn_7_16360 Lactuca sativa HOM05D004937 ORTHO05D006414 3.5e-23 113.2 279 36.2
PSO541G2704 Papaver somniferum HOM05D004937 ORTHO05D006414 1.0e-22 111.7 257 36.6
PSO675G7903 Papaver somniferum HOM05D004937 ORTHO05D006414 2.3e-22 110.5 257 36.6
BcaB08g37428 Brassica carinata HOM05D004937 ORTHO05D006414 3.0e-22 110.2 264 36.4
CsaV3_1G010670 Cucumis sativus L. HOM05D004937 ORTHO05D006414 3.0e-22 110.2 269 36.1
MELO3C002448.2 Cucumis melo HOM05D004937 ORTHO05D006414 6.6e-22 109.0 260 36.9
Glyma.17G012400 Glycine max HOM05D004937 ORTHO05D006414 1.9e-21 107.5 250 35.2
Carub.0001s1147 Capsella rubella HOM05D004937 ORTHO05D006414 2.5e-21 107.1 268 35.4
Phvul.003G080000 Phaseolus vulgaris HOM05D004937 ORTHO05D006414 3.3e-21 106.7 250 36.0
BcaC07g41758 Brassica carinata HOM05D004937 ORTHO05D006414 4.3e-21 106.3 283 35.7
Hund23457 Selenicereus undatus HOM05D004937 ORTHO05D006414 4.3e-21 106.3 302 37.4
C08p47960 Brassica napus HOM05D004937 ORTHO05D006414 5.6e-21 105.9 283 35.7
BolC8t52333H Brassica oleracea HOM05D004937 ORTHO05D006414 7.3e-21 105.5 283 36.0
Ah.14g087960 Amaranthus hybridus HOM05D004937 ORTHO05D006414 9.5e-21 105.1 317 37.2
ClCG03G004650 Citrullus lanatus HOM05D000020 ORTHO05D000904 9.5e-21 105.1 259 36.3
CDE02G2441 Ceratophyllum demersum HOM05D004937 ORTHO05D006414 1.6e-20 104.4 248 34.7
VMungo1215G2760 Vigna mungo HOM05D004937 ORTHO05D006414 2.8e-20 103.6 250 36.0
AUR62021933 Chenopodium quinoa HOM05D004937 ORTHO05D006414 3.6e-20 103.2 295 33.6
AL1G22990 Arabidopsis lyrata HOM05D004937 ORTHO05D006414 6.2e-20 102.4 264 36.4
AT1G11800 Arabidopsis thaliana HOM05D004937 ORTHO05D006414 6.2e-20 102.4 277 35.7
BraA09t41776Z Brassica rapa HOM05D004937 ORTHO05D006414 8.1e-20 102.1 258 37.6
Prupe.4G019000 Prunus persica HOM05D004937 ORTHO05D006414 8.1e-20 102.1 267 37.8
EL10Ac8g20076 Beta vulgaris HOM05D004937 ORTHO05D006414 1.1e-19 101.7 337 34.1
ECA236G0630 Erigeron canadensis HOM05D004937 ORTHO05D006414 1.1e-19 101.7 255 36.9
PSO541G5924 Papaver somniferum HOM05D004937 ORTHO05D006414 3.1e-19 100.1 262 32.8
Cpa.g.sc152.26 Carica papaya HOM05D004937 ORTHO05D006414 5.2e-19 99.4 276 33.7
Lj4g0022599 Lotus japonicus HOM05D004937 ORTHO05D006414 5.2e-19 99.4 255 27.5
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 8.9e-19 98.6 286 35.3
Ciclev10014440m.g Citrus clementina HOM05D004937 ORTHO05D006414 1.2e-18 98.2 299 32.4
CARHR012140 Cardamine hirsuta HOM05D004937 ORTHO05D006414 1.5e-18 97.8 265 35.8
BcaB08g37429 Brassica carinata HOM05D004937 ORTHO05D006414 2.0e-18 97.4 287 33.4
PSO675G1521 Papaver somniferum HOM05D004937 ORTHO05D006414 2.0e-18 97.4 256 34.4
arahy.Tifrunner.gnm1.ann1.VWCB5J Arachis hypogaea HOM05D004937 ORTHO05D006414 3.4e-18 96.7 258 33.3
Thhalv10006713m.g Eutrema salsugineum HOM05D004937 ORTHO05D000904 3.4e-18 96.7 260 35.8
Sed0026378 Sechium edule HOM05D004937 ORTHO05D006414 3.4e-18 96.7 254 33.5
MD10G1323300 Malus domestica HOM05D004937 ORTHO05D006414 4.4e-18 96.3 264 39.0
Sp1g10430 Schrenkiella parvula HOM05D004937 ORTHO05D006414 7.6e-18 95.5 267 35.6
Sabra04G0005400 Salix brachista HOM05D004937 ORTHO05D006414 1.7e-17 94.4 271 34.3
Aa31LG1G2970 Aethionema arabicum HOM05D004937 ORTHO05D006414 2.9e-17 93.6 269 34.2
Potri.004G010400 Populus trichocarpa HOM05D004937 ORTHO05D006414 4.9e-17 92.8 260 34.6
FvH4_3g01860 Fragaria vesca HOM05D004937 ORTHO05D006414 1.1e-16 91.7 287 35.5
arahy.Tifrunner.gnm1.ann1.L1792D Arachis hypogaea HOM05D004937 ORTHO05D006414 1.4e-16 91.3 305 30.5
SHI02217 Sapria himalayana HOM05D004937 ORTHO05D006414 1.4e-16 91.3 254 35.4
FAN21G0664 Fragaria x ananassa HOM05D004937 ORTHO05D006414 2.4e-16 90.5 282 35.5
RcHm_v2.0_Chr5g0002731 Rosa chinensis HOM05D004937 ORTHO05D006414 3.2e-16 90.1 258 36.4
Lalb_Chr12g0196051 Lupinus albus HOM05D004937 ORTHO05D006414 7.1e-16 89.0 261 33.3
Hma1.2p1_3370F.1_g335650 Hydrangea macrophylla HOM05D004937 ORTHO05D006414 2.1e-15 87.4 250 34.4
TAR624G0274 Trochodendron aralioides HOM05D004937 ORTHO05D006414 2.7e-15 87.0 252 36.9
Aqoxy1G02086 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 3.5e-15 86.7 297 32.7
Medtr4g132300 Medicago truncatula HOM05D004937 ORTHO05D006414 1.3e-14 84.7 248 25.8
HPP92_001597 Vanilla planifolia HOM05D004937 ORTHO05D006414 2.3e-14 84.0 256 33.6
THA.LOC104809500 Tarenaya hassleriana HOM05D004937 ORTHO05D006414 1.9e-13 80.9 256 28.5
HPP92_001591 Vanilla planifolia HOM05D004937 ORTHO05D006414 3.3e-13 80.1 255 32.5
DCAR_028195 Daucus carota HOM05D004937 ORTHO05D006414 4.7e-12 76.3 250 31.2
Migut.M01331 Erythranthe guttata HOM05D004937 ORTHO05D006414 1.4e-11 74.7 51 64.7
Dinv20060 Davidia involucrata HOM05D004937 ORTHO05D006414 1.3e-09 68.2 42 73.8
TPR.G37060 Trifolium pratense HOM05D004937 ORTHO05D006414 1.7e-09 67.8 103 39.8
Psat4g006200 Pisum sativum HOM05D004937 ORTHO05D006414 2.2e-09 67.4 37 70.3
Ca_21076_v3 Cicer arietinum L. HOM05D004937 ORTHO05D006414 2.9e-09 67.0 42 66.7
Potri.004G010900 Populus trichocarpa HOM05D004937 ORTHO05D006414 6.4e-09 65.9 160 35.0
Dinv13907 Davidia involucrata HOM05D004937 ORTHO05D006414 1.9e-08 64.3 89 34.8
Os10g0401100 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 2.4e-08 63.9 50 56.0
TPR.G22185 Trifolium pratense HOM05D004937 ORTHO05D006414 2.4e-08 63.9 37 70.3
Dinv13906 Davidia involucrata HOM05D004937 ORTHO05D006414 7.1e-08 62.4 45 57.8
Atru.chr10.2244 Acer truncatum HOM05D004937 ORTHO05D006414 9.3e-08 62.0 116 45.7
HanXRQChr05g0129391 Helianthus annuus HOM05D004937 ORTHO05D006414 2.1e-07 60.8 66 45.5
QL05p072858 Quercus lobata HOM05D004937 ORTHO05D006414 4.6e-07 59.7 39 71.8
AUR62012723 Chenopodium quinoa HOM05D004937 ORTHO05D006414 7.8e-07 58.9 227 27.3
PSO017G1772 Papaver somniferum HOM05D004937 ORTHO05D006414 7.8e-07 58.9 49 55.1
QL05p072840 Quercus lobata HOM05D004937 ORTHO05D006414 1.3e-06 58.2 41 63.4
Mapoly0028s0073 Marchantia polymorpha HOM05D004937 ORTHO05D006414 3.0e-06 57.0 74 43.2
Zm00001eb043220 Zea mays HOM05D004937 ORTHO05D006414 3.0e-06 57.0 35 65.7
SMO361G0593 Selaginella moellendorffii HOM05D004937 ORTHO05D006414 3.9e-06 56.6 35 65.7
AagrBONN_evm.TU.Sc2ySwM_368.2060 Anthoceros agrestis HOM05D004937 ORTHO05D006414 5.1e-06 56.2 59 47.5
SEGI_33731 Sequoiadendron giganteum HOM05D004937 ORTHO05D006414 5.1e-06 56.2 64 45.3
HPP92_014181 Vanilla planifolia HOM05D004937 ORTHO05D006414 8.7e-06 55.5 68 45.6


User provided reference genes

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